Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56358
95 % 1 2 40120
90 % 1 2 38214
70 % 11 20 3433
50 % 12 22 3096
40 % 12 22 3073
30 % 12 27 447
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 32641
95 % 1 2 33378
90 % 1 2 31910
70 % 12 22 3191
50 % 12 22 3184
40 % 12 22 3081
30 % 62 234 158
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 48206
95 % 1 2 40119
90 % 1 2 38213
70 % 11 22 2676
50 % 12 24 2452
40 % 16 41 408
30 % 66 250 144
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 6166
95 % 11 17 4313 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 4248
70 % 11 18 4131
50 % 11 18 3967
40 % 11 18 3767
30 % 11 18 3438

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1FMD 2 2 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) 12110
2 1QGC 2 2 PROTEIN (VIRUS CAPSID PROTEIN VP2) 12110