Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62368
95 % 1 2 32027
90 % 1 2 30624
70 % 11 20 3247
50 % 12 22 2853
40 % 12 22 2803
30 % 12 22 2630
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 41298
95 % 1 2 31519
90 % 1 2 30266
70 % 12 22 2897
50 % 12 22 2854
40 % 12 22 2804
30 % 62 195 167
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 41170
95 % 1 2 31457
90 % 1 2 30224
70 % 11 22 2384
50 % 12 24 2180
40 % 16 36 339
30 % 66 210 149
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 16416
95 % 11 18 3726 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 3779
70 % 11 18 3721
50 % 11 18 3610
40 % 11 18 3479
30 % 12 25 678

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1FMD 2 2 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) 12110
2 1QGC 2 2 PROTEIN (VIRUS CAPSID PROTEIN VP2) 12110