Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54255
95 % 1 2 38587
90 % 1 2 36786
70 % 11 20 3263
50 % 12 22 2962
40 % 12 22 2967
30 % 12 27 426
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 31302
95 % 1 2 32078
90 % 1 2 30700
70 % 12 22 3029
50 % 12 22 3054
40 % 12 22 2976
30 % 62 197 187
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 46339
95 % 1 2 38586
90 % 1 2 36785
70 % 11 22 2551
50 % 12 24 2353
40 % 16 36 395
30 % 66 210 165
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 5856
95 % 11 17 4078 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 4030
70 % 11 18 3941
50 % 11 18 3826
40 % 11 18 3649
30 % 11 18 3326

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1FMD 2 2 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) 12110
2 1QGC 2 2 PROTEIN (VIRUS CAPSID PROTEIN VP2) 12110