Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61879
95 % 1 2 31782
90 % 1 2 30403
70 % 11 20 3214
50 % 12 22 2827
40 % 12 22 2779
30 % 12 22 2605
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40941
95 % 1 2 31277
90 % 1 2 30046
70 % 12 22 2865
50 % 12 22 2828
40 % 12 22 2780
30 % 61 195 166
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40814
95 % 1 2 31216
90 % 1 2 30005
70 % 11 22 2358
50 % 12 24 2149
40 % 15 36 332
30 % 65 210 149
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 16269
95 % 11 18 3686 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 3739
70 % 11 18 3684
50 % 11 18 3572
40 % 11 18 3443
30 % 12 25 672

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1FMD 2 2 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) 12110
2 1QGC 2 2 PROTEIN (VIRUS CAPSID PROTEIN VP2) 12110