Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55086
95 % 1 2 39186
90 % 1 2 37336
70 % 11 20 3338
50 % 12 22 3021
40 % 12 22 3013
30 % 12 27 433
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 31861
95 % 1 2 32617
90 % 1 2 31194
70 % 12 22 3099
50 % 12 22 3115
40 % 12 22 3022
30 % 62 209 182
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 47066
95 % 1 2 39185
90 % 1 2 37335
70 % 11 22 2605
50 % 12 24 2398
40 % 16 37 406
30 % 66 225 162
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 6010
95 % 11 17 4174 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 4119
70 % 11 18 4021
50 % 11 18 3891
40 % 11 18 3697
30 % 11 18 3366

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1FMD 2 2 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) 12110
2 1QGC 2 2 PROTEIN (VIRUS CAPSID PROTEIN VP2) 12110