Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54561
95 % 1 2 38820
90 % 1 2 37006
70 % 11 20 3286
50 % 12 22 2981
40 % 12 22 2981
30 % 12 27 429
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 31507
95 % 1 2 32293
90 % 1 2 30893
70 % 12 22 3051
50 % 12 22 3072
40 % 12 22 2990
30 % 62 197 188
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 46607
95 % 1 2 38819
90 % 1 2 37005
70 % 11 22 2567
50 % 12 24 2366
40 % 16 36 405
30 % 66 210 168
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 5915
95 % 11 17 4098 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 4055
70 % 11 18 3962
50 % 11 18 3844
40 % 11 18 3662
30 % 11 18 3339

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Q4W 2 2 Coxsackievirus capsid protein VP2 138950
2 4Q4X 2 2 Coxsackievirus capsid protein VP2 138950
3 4Q4Y 2 2 Coxsackievirus capsid protein VP2 138950
4 1QQP 2 2 PROTEIN (GENOME POLYPROTEIN) STRAIN BFS, 1860 12110
5 1ZBA 2 2 Coat protein VP2 12110
6 4IV1 2 B Capsid protein VP2 UNP RESIDUES 287-504 12110
7 1AYM 2 2 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
8 4WM8 2 B VP2 138951
9 5NE4 2 2 O PanAsia VP2 12110
10 5BNP 2 B Capsid protein VP2 UNP residues 70-317 138951
11 3VBH 2 B Genome polyprotein, capsid protein VP2 138948
12 1BBT 2 2 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) 12110
13 1PVC 3 2 POLIOVIRUS TYPE 3, SABIN STRAIN P3/SABIN P3/LEON/12A(1)B 138950
14 5BNO 2 B Capsid protein VP2 UNP residues 70-317 138951
15 5D8A 2 B VP2 12110
16 1FPN 2 2 COAT PROTEIN VP2 147711
17 1ND2 2 B coat protein VP2 147711
18 4WM7 2 B VP2 138951
19 1HXS 2 2 GENOME POLYPROTEIN, COAT PROTEIN VP2 RESIDUES 69-340 138950
20 5BNN 2 B Capsid protein VP2 UNP residues 70-317 138951
21 5CFD 3 C VP2 1821750
22 1NCQ 2 B COAT PROTEIN VP2 147712
23 5CFC 3 C VP2 residues 154-411 1821750
24 3CJI 3 C Polyprotein sequence database residues 435-673 390157
25 1FOD 2 2 FOOT AND MOUTH DISEASE VIRUS 12110
26 1D4M 2 2 PROTEIN (COXSACKIEVIRUS A9) VP2 138949
27 4RHV 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
28 4GH4 2 B capsid protein VP2 UNP residues 12-218 12110
29 1EAH 2 2 POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 138950
30 4Q4V 2 2 Coxsackievirus capsid protein VP2 138950
31 1K5M 2 B CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120 THE CHIMERA CONSISTS OF THE HRV14 COAT PROTEIN VP2 (P1B) AND RESIDUES 314-325 OF HIV-1 gp120. 147712
32 1QJU 2 2 PROTEIN VP2 RESIDUES 70-330 147711
33 3VBF 2 B Genome Polyprotein, capsid protein VP2 STRAIN FUYANG, ANHUI. P.R.C/17.08/1 138948
34 2PLV 2 2 HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP2) 138950
35 4PDW 2 B Genome polyprotein resdiues 70-331 147712 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
36 4CDQ 2 B VP2 138948
37 3ZFE 2 B VP2 VIRION OF HUMAN ENTEROVIRUS 71 138948
38 1QJX 2 2 PROTEIN VP2 RESIDUES 70-330 147711
39 1QJY 2 2 PROTEIN VP2 RESIDUES 70-330 147711
40 1NCR 2 B coat protein VP2 147711
41 3VBO 2 B Genome Polyprotein, capsid protein VP2 138948
42 1ZBE 2 2 Coat protein VP2 12110
43 1AYN 2 2 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
44 1C8M 2 2 HUMAN RHINOVIRUS 16 COAT PROTEIN RESIDUES 79-330 147711
45 2MEV 2 2 MENGO VIRUS COAT PROTEIN (SUBUNIT VP2) 1821749
46 1AR7 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
47 1ND3 2 B coat protein VP2 147711
48 4IV3 2 B Capsid protein VP2 UNP RESIDUES 287-504 12110
49 1BEV 2 2 BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 12064
50 4JGY 2 B Polyprotein, capsid protein VP2 STRAIN NINGBO.CHN/028-2/2009 138948
51 1AL2 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
52 1PO1 3 2 POLIOVIRUS TYPE 1 MAHONEY 138950
53 2WZR 2 2 POLYPROTEIN RESIDUES 285-503 12110
54 1AR9 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
55 5C4W 2 B VP2 138948
56 1H8T 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
57 1PO2 3 2 POLIOVIRUS TYPE 1 MAHONEY 138950
58 1ASJ 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
59 1Z7S 2 2 Human COXSACKIEVIRUS A21 Viral Protein 2 138950
60 1OOP 2 B Coat protein VP2 138949
61 4CDX 2 B VP2 138948
62 1FMD 2 2 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) 12110
63 3VDD 2 B Protein VP2 UNP residues 70-330 147711
64 1NA1 2 B Coat protein VP2 147712
65 4CDU 2 B VP2 138948
66 1VBB 3 2 POLIOVIRUS TYPE 3 138950
67 1AR6 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
68 1AR8 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
69 4N53 2 B Capsid protein VP2 138948
70 4CDW 2 B VP2 138948
71 4CEY 2 B VP2 138948
72 1VBC 3 2 POLIOVIRUS TYPE 3 138950
73 3TN9 2 2 Protein VP2 147711
74 3ZFG 2 B VP2 VIRION OF HUMAN ENTEROVIRUS 71 138948
75 1VBE 3 2 POLIOVIRUS TYPE 3 138950
76 4CEW 2 B VP2 138948
77 3VBS 2 B Genome Polyprotein, capsid protein VP2 138948
78 5ABJ 2 B VP2 UNP RESIDUES 70-323 138948
79 2WS9 2 2 P1 CAPSID PROTEIN VP2, RESIDUES 81-310 47000
80 1VBD 3 2 POLIOVIRUS TYPE 1 MAHONEY P1/MAHONEY 138950
81 1TME 2 2 THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP2) 1821750
82 3ZFF 2 B VP2 138948
83 1RHI 2 2 HUMAN RHINOVIRUS 3 COAT PROTEIN 147712
84 1VBA 3 2 POLIOVIRUS TYPE 3 138950
85 4JGZ 2 B Polyprotein, capsid protein VP2 STRAIN NINGBO.CHN/028-2/2009 138948
86 1MQT 2 B Polyprotein Capsid Protein SVDV COAT PROTEIN VP2 138949
87 1RVF 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN 147712
88 4GB3 2 2 coat protein 2 UNP residues 70-332 138949
89 2X5I 2 B VP2 138949
90 1PIV 3 2 POLIOVIRUS TYPE 3 (SUBUNIT VP2) 138950
91 1COV 2 2 COXSACKIEVIRUS COAT PROTEIN 138949
92 1R1A 2 2 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) 147711
93 1EV1 2 2 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
94 4N43 2 B Capsid protein VP2 EV71 capsid protein VP2 138948
95 3VBR 2 B Genome Polyprotein, capsid protein VP0 138948
96 2XBO 2 2 P1 CAPSID PROTEIN VP2, RESIDUES 81-310 47000
97 1V9U 2 2 Coat protein VP2 147711
98 4AED 2 B VP2 138948
99 3VBU 2 B Genome Polyprotein, capsid protein VP0 138948
100 5DDJ 2 2 Foot and mouth disease virus, VP2 12110
101 3DPR 2 B Protein VP2 147711
102 4L3B 2 B Protein VP2 UNP residues 70-330 147711
103 2WFF 2 2 P1 CAPSID PROTEIN VP2, RESIDUES 81-310 47000
104 6EIT 2 2 VP2 138950
105 5OYI 2 2, B, E, H, K Genome polyprotein 12110 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.46 | Details 3.6.1.15 | Details
106 5OWX 2 2 Genome polyprotein 12110 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.46 | Details 3.6.1.15 | Details
107 5OSN 2 B Capsid protein 12064
108 5XS4 2 B Genome polyprotein UNP residues 7-=325 138948
109 5XS7 4 B Genome polyprotein UNP residues 70-325 138948
110 5W3L 3 C viral protein 2 UNP residues 70-331 147712
111 5W3M 5 C viral protein 2 UNP residues 70-331 147712
112 5W3O 5 C viral protein 2 UNP residues 70-331 147712
113 5W3E 5 C viral protein 2 UNP residues 70-331 147712
114 5O5P 2 2 Capsid proteins, VP2 138950
115 5O5B 2 2 Capsid proteins 138950
116 5NER 2 2 O PanAsia VP2 12110
117 5NET 2 2 O1 Manisa VP2 12110
118 5NEU 2 2 O1 Manisa VP2 12110
119 5NED 2 B O PanAsia VP2 12110
120 5NEJ 2 2 O1 Manisa VP2 12110
121 5NEM 2 2 O PanAsia VP2 12110
122 5KWL 2 2 VP2 UNP residues 70-337 138950
123 5KTZ 2 2 VP2 UNP residues 70-338 138950
124 5KU0 2 2 VP2 UNP residues 70-338 138950
125 5KU2 2 2 VP2 UNP residues 70-337 138950
126 5K0U 3 C Capsid protein VP2 UNP residues 68-332 463676
127 3JD7 2 2 Capsid protein VP2 UNP residues 70-332 138949
128 3JBC 2 2 Capsid protein VP2 UNP residues 70-341 138950
129 3JBD 2 2 Capsid protein VP2 UNP residues 70-341 138950
130 3JBE 2 2 Capsid protein VP2 UNP residues 70-341 138950
131 3JBF 2 2 Capsid protein VP2 UNP residues 70-341 138950
132 3JBG 2 2 Capsid protein VP2 UNP residues 70-341 138950
133 5AC9 2 2 VP3 FOOT-AND-MOUTH DISEASE VIRUS 12110
134 5ACA 2 2 VP2 FMDV SAT2 SEROTYPE WITH A MUTATION AT VP2 S93Y 12110
135 5A8F 3 C HUMAN SAFFOLD VIRUS-3 VP2 1821750
136 3J9F 2 2 Protein VP2 UNP residues 70-341 138950
137 3J8F 2 2 Capsid protein VP2 UNP residues 70-341 138950
138 4CTF 2 C0, C1, C2, C3, C4, C5, C6, C7, C8, C9, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, CK, CL, CM, CN, CO, CP, CQ, CR, CS, CT, CU, CV, CW, CX, CY, CZ, Ca, Cb, Cc, Cd, Ce, Cf, Cg, Ch, Ci, Cj, Ck, Cl, Cm, Cn, Co, Cp, Cq, Cr, Cs, Ct, Cu, Cv, Cw, Cx EQUINE RHINITIS A VIRUS RESIDUES 81-310 47000
139 4CTG 2 B0, B1, B2, B3, B4, B5, B6, B7, B8, B9, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO, BP, BQ, BR, BS, BT, BU, BV, BW, BX, BY, BZ, Ba, Bb, Bc, Bd, Be, Bf, Bg, Bh, Bi, Bj, Bk, Bl, Bm, Bn, Bo, Bp, Bq, Br, Bs, Bt, Bu, Bv, Bw, Bx P1 RESIDUES 111-310 47000
140 4C0U 2 B VP2 138948
141 4C0Y 2 B VP2 138948
142 4C10 4 B VP3 138948
143 3J48 2 2 Protein VP2 UNP residues 70-341 138950
144 4BIP 2 B VP2 138948
145 4BIQ 2 B VP2 HOMOLOGY MODEL OF COXSACKIEVIRUS A7 EMPTY CAPSID PROTEIN VP2 138948
146 3J3O 5 2 Protein VP2 UNP residues 70-341 138950
147 3J3P 4 2 Protein VP2 UNP residues 70-341 138950
148 3J2J 3 C Protein VP2 UNP residues 79-330 138949
149 3J22 2 B capsid protein VP0 UNP residues 82-318 138948
150 3J23 2 B capsid protein VP0 UNP residues 82-318 138948
151 3IYP 3 C Polyprotein 138949
152 3IYB 4 4 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
153 3IYC 4 4 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
154 3EPC 3 2 Protein VP2 138950
155 3EPD 4 2 protein VP2 138950
156 3EPF 3 2 Protein VP2 138950
157 2C8I 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
158 1Z7Z 2 2 human coxsackievirus A21 Viral Protein 2 residues 2010-2272 138950
159 1XYR 2 2 Genome polyprotein, Coat protein VP2 residues 96-332 138950
160 1UPN 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
161 1NN8 3 2 coat protein VP2 138950
162 1M11 3 2 COAT PROTEIN VP2 138949
163 1JEW 3 2 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP2 Residues 70-332 138949
164 1DGI 3 2 VP2 138950
165 1D3E 3 2 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP2) 169066
166 1D3I 3 2 PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP2) 169066
167 1QGC 2 2 PROTEIN (VIRUS CAPSID PROTEIN VP2) 12110
168 1VRH 2 2 RHINOVIRUS 14 147712
169 1RUC 2 2 RHINOVIRUS 14 147712
170 1RUD 2 2 RHINOVIRUS 14 147712
171 1RUE 2 2 RHINOVIRUS 14 147712
172 1RUF 2 2 RHINOVIRUS 14 147712
173 1RUG 2 2 RHINOVIRUS 14 147712
174 1RUH 2 2 RHINOVIRUS 14 147712
175 1RUI 2 2 RHINOVIRUS 14 147712
176 1RUJ 2 2 RHINOVIRUS 14 147712
177 1HRV 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
178 2HWB 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
179 2HWC 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
180 2HWD 2 2 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) 147711
181 2HWE 2 2 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) 147711
182 2HWF 2 2 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) 147711
183 1HRI 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
184 1TMF 2 2 THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP2) 1821750
185 1MEC 2 2 MENGO VIRUS COAT PROTEIN (SUBUNIT VP2) 1821749
186 1R09 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
187 1R08 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
188 1RMU 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
189 2R04 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
190 2R06 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
191 2R07 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
192 2RM2 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
193 2RMU 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
194 2RR1 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
195 2RS1 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 169066
196 2RS3 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
197 2RS5 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712