Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61221
95 % 1 2 31433
90 % 1 2 30084
70 % 11 20 3168
50 % 12 22 2788
40 % 12 22 2744
30 % 12 22 2573
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40471
95 % 1 2 30934
90 % 1 2 29726
70 % 12 22 2833
50 % 12 22 2789
40 % 12 22 2745
30 % 61 194 165
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40346
95 % 1 2 30875
90 % 1 2 29687
70 % 11 22 2318
50 % 12 24 2115
40 % 15 36 321
30 % 65 209 148
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 16061
95 % 11 18 3635 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 3689
70 % 11 18 3637
50 % 11 18 3533
40 % 11 18 3411
30 % 12 25 667

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Q4W 2 2 Coxsackievirus capsid protein VP2 138950
2 4Q4X 2 2 Coxsackievirus capsid protein VP2 138950
3 4Q4Y 2 2 Coxsackievirus capsid protein VP2 138950
4 1QQP 2 2 PROTEIN (GENOME POLYPROTEIN) STRAIN BFS, 1860 12110
5 1ZBA 2 2 Coat protein VP2 12110
6 4IV1 2 B Capsid protein VP2 UNP RESIDUES 287-504 12110
7 1AYM 2 2 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
8 4WM8 2 B VP2 138951
9 5NE4 2 2 O PanAsia VP2 12110
10 5BNP 2 B Capsid protein VP2 UNP residues 70-317 138951
11 3VBH 2 B Genome polyprotein, capsid protein VP2 138948
12 1BBT 2 2 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) 12110
13 1PVC 3 2 POLIOVIRUS TYPE 3, SABIN STRAIN P3/SABIN P3/LEON/12A(1)B 138950
14 5BNO 2 B Capsid protein VP2 UNP residues 70-317 138951
15 5D8A 2 B VP2 12110
16 1FPN 2 2 COAT PROTEIN VP2 147711
17 1ND2 2 B coat protein VP2 147711
18 4WM7 2 B VP2 138951
19 1HXS 2 2 GENOME POLYPROTEIN, COAT PROTEIN VP2 RESIDUES 69-340 138950
20 5BNN 2 B Capsid protein VP2 UNP residues 70-317 138951
21 1NCQ 2 B COAT PROTEIN VP2 147712
22 5CFC 3 C Genome polyprotein residues 154-411 1821750
23 3CJI 3 C Polyprotein sequence database residues 435-673 390157
24 1FOD 2 2 FOOT AND MOUTH DISEASE VIRUS 12110
25 1D4M 2 2 PROTEIN (COXSACKIEVIRUS A9) VP2 138949
26 4RHV 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
27 4GH4 2 B capsid protein VP2 UNP residues 12-218 12110
28 1EAH 2 2 POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 138950
29 4Q4V 2 2 Coxsackievirus capsid protein VP2 138950
30 1K5M 2 B CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120 THE CHIMERA CONSISTS OF THE HRV14 COAT PROTEIN VP2 (P1B) AND RESIDUES 314-325 OF HIV-1 gp120. 147712
31 1QJU 2 2 PROTEIN VP2 RESIDUES 70-330 147711
32 3VBF 2 B Genome Polyprotein, capsid protein VP2 STRAIN FUYANG, ANHUI. P.R.C/17.08/1 138948
33 2PLV 2 2 HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP2) 138950
34 4PDW 2 B Genome polyprotein resdiues 70-331 147712 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
35 4CDQ 2 B VP2 138948
36 3ZFE 2 B VP2 VIRION OF HUMAN ENTEROVIRUS 71 138948
37 1QJX 2 2 PROTEIN VP2 RESIDUES 70-330 147711
38 1QJY 2 2 PROTEIN VP2 RESIDUES 70-330 147711
39 1NCR 2 B coat protein VP2 147711
40 3VBO 2 B Genome Polyprotein, capsid protein VP2 138948
41 1ZBE 2 2 Coat protein VP2 12110
42 1AYN 2 2 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
43 1C8M 2 2 HUMAN RHINOVIRUS 16 COAT PROTEIN RESIDUES 79-330 147711
44 2MEV 2 2 MENGO VIRUS COAT PROTEIN (SUBUNIT VP2) 1821749
45 1AR7 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
46 1ND3 2 B coat protein VP2 147711
47 4IV3 2 B Capsid protein VP2 UNP RESIDUES 287-504 12110
48 1BEV 2 2 BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 12064
49 4JGY 2 B Polyprotein, capsid protein VP2 STRAIN NINGBO.CHN/028-2/2009 138948
50 1AL2 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
51 1PO1 3 2 POLIOVIRUS TYPE 1 MAHONEY 138950
52 2WZR 2 2 POLYPROTEIN RESIDUES 285-503 12110
53 1AR9 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
54 5C4W 2 B VP2 138948
55 1H8T 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
56 1PO2 3 2 POLIOVIRUS TYPE 1 MAHONEY 138950
57 1ASJ 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
58 1Z7S 2 2 Human COXSACKIEVIRUS A21 Viral Protein 2 138950
59 1OOP 2 B Coat protein VP2 138949
60 4CDX 2 B VP2 138948
61 1FMD 2 2 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) 12110
62 3VDD 2 B Protein VP2 UNP residues 70-330 147711
63 1NA1 2 B Coat protein VP2 147712
64 4CDU 2 B VP2 138948
65 1VBB 3 2 POLIOVIRUS TYPE 3 138950
66 1AR6 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
67 1AR8 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
68 4N53 2 B Capsid protein VP2 138948
69 4CDW 2 B VP2 138948
70 4CEY 2 B VP2 138948
71 1VBC 3 2 POLIOVIRUS TYPE 3 138950
72 3TN9 2 2 Protein VP2 147711
73 3ZFG 2 B VP2 VIRION OF HUMAN ENTEROVIRUS 71 138948
74 1VBE 3 2 POLIOVIRUS TYPE 3 138950
75 4CEW 2 B VP2 138948
76 3VBS 2 B Genome Polyprotein, capsid protein VP2 138948
77 5ABJ 2 B VP2 UNP RESIDUES 70-323 138948
78 2WS9 2 2 P1 CAPSID PROTEIN VP2, RESIDUES 81-310 47000
79 1VBD 3 2 POLIOVIRUS TYPE 1 MAHONEY P1/MAHONEY 138950
80 1TME 2 2 THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP2) 1821750
81 3ZFF 2 B VP2 138948
82 1RHI 2 2 HUMAN RHINOVIRUS 3 COAT PROTEIN 147712
83 1VBA 3 2 POLIOVIRUS TYPE 3 138950
84 4JGZ 2 B Polyprotein, capsid protein VP2 STRAIN NINGBO.CHN/028-2/2009 138948
85 1MQT 2 B Polyprotein Capsid Protein SVDV COAT PROTEIN VP2 138949
86 1RVF 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN 147712
87 4GB3 2 2 coat protein 2 UNP residues 70-332 138949
88 2X5I 2 B VP2 138949
89 1PIV 3 2 POLIOVIRUS TYPE 3 (SUBUNIT VP2) 138950
90 1COV 2 2 COXSACKIEVIRUS COAT PROTEIN 138949
91 1R1A 2 2 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) 147711
92 1EV1 2 2 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
93 4N43 2 B Capsid protein VP2 EV71 capsid protein VP2 138948
94 3VBR 2 B Genome Polyprotein, capsid protein VP0 138948
95 2XBO 2 2 P1 CAPSID PROTEIN VP2, RESIDUES 81-310 47000
96 1V9U 2 2 Coat protein VP2 147711
97 4AED 2 B VP2 138948
98 3VBU 2 B Genome Polyprotein, capsid protein VP0 138948
99 5DDJ 2 2 Foot and mouth disease virus, VP2 12110
100 3DPR 2 B Protein VP2 147711
101 4L3B 2 B Protein VP2 UNP residues 70-330 147711
102 2WFF 2 2 P1 CAPSID PROTEIN VP2, RESIDUES 81-310 47000
103 5OSN 2 B Capsid protein 12064
104 5XS4 2 B Genome polyprotein UNP residues 7-=325 138948
105 5XS7 4 B Genome polyprotein UNP residues 70-325 138948
106 5W3L 3 C viral protein 2 UNP residues 70-331 147712
107 5W3M 5 C viral protein 2 UNP residues 70-331 147712
108 5W3O 5 C viral protein 2 UNP residues 70-331 147712
109 5W3E 5 C viral protein 2 UNP residues 70-331 147712
110 5O5P 2 2 Capsid proteins, VP2 138950
111 5O5B 2 2 Capsid proteins 138950
112 5NER 2 2 O PanAsia VP2 12110
113 5NET 2 2 O1 Manisa VP2 12110
114 5NEU 2 2 O1 Manisa VP2 12110
115 5NED 2 B O PanAsia VP2 12110
116 5NEJ 2 2 O1 Manisa VP2 12110
117 5NEM 2 2 O PanAsia VP2 12110
118 5KWL 2 2 VP2 UNP residues 70-337 138950
119 5KTZ 2 2 VP2 UNP residues 70-338 138950
120 5KU0 2 2 VP2 UNP residues 70-338 138950
121 5KU2 2 2 VP2 UNP residues 70-337 138950
122 5K0U 3 C Capsid protein VP2 UNP residues 68-332 463676
123 3JD7 2 2 Capsid protein VP2 UNP residues 70-332 138949
124 3JBC 2 2 Capsid protein VP2 UNP residues 70-341 138950
125 3JBD 2 2 Capsid protein VP2 UNP residues 70-341 138950
126 3JBE 2 2 Capsid protein VP2 UNP residues 70-341 138950
127 3JBF 2 2 Capsid protein VP2 UNP residues 70-341 138950
128 3JBG 2 2 Capsid protein VP2 UNP residues 70-341 138950
129 5AC9 2 2 VP3 FOOT-AND-MOUTH DISEASE VIRUS 12110
130 5ACA 2 2 VP2 FMDV SAT2 SEROTYPE WITH A MUTATION AT VP2 S93Y 12110
131 5A8F 3 C HUMAN SAFFOLD VIRUS-3 VP2 1821750
132 5CFD 3 C VP2 1821750
133 3J9F 2 2 Protein VP2 UNP residues 70-341 138950
134 3J8F 2 2 Capsid protein VP2 UNP residues 70-341 138950
135 4CTF 2 C0, C1, C2, C3, C4, C5, C6, C7, C8, C9, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, CK, CL, CM, CN, CO, CP, CQ, CR, CS, CT, CU, CV, CW, CX, CY, CZ, Ca, Cb, Cc, Cd, Ce, Cf, Cg, Ch, Ci, Cj, Ck, Cl, Cm, Cn, Co, Cp, Cq, Cr, Cs, Ct, Cu, Cv, Cw, Cx EQUINE RHINITIS A VIRUS RESIDUES 81-310 47000
136 4CTG 2 B0, B1, B2, B3, B4, B5, B6, B7, B8, B9, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO, BP, BQ, BR, BS, BT, BU, BV, BW, BX, BY, BZ, Ba, Bb, Bc, Bd, Be, Bf, Bg, Bh, Bi, Bj, Bk, Bl, Bm, Bn, Bo, Bp, Bq, Br, Bs, Bt, Bu, Bv, Bw, Bx P1 RESIDUES 111-310 47000
137 4C0U 2 B VP2 138948
138 4C0Y 2 B VP2 138948
139 4C10 4 B VP3 138948
140 3J48 2 2 Protein VP2 UNP residues 70-341 138950
141 4BIP 2 B VP2 138948
142 4BIQ 2 B VP2 HOMOLOGY MODEL OF COXSACKIEVIRUS A7 EMPTY CAPSID PROTEIN VP2 138948
143 3J3O 5 2 Protein VP2 UNP residues 70-341 138950
144 3J3P 4 2 Protein VP2 UNP residues 70-341 138950
145 3J2J 3 C Protein VP2 UNP residues 79-330 138949
146 3J22 2 B capsid protein VP0 UNP residues 82-318 138948
147 3J23 2 B capsid protein VP0 UNP residues 82-318 138948
148 3IYP 3 C Polyprotein 138949
149 3IYB 4 4 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
150 3IYC 4 4 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
151 3EPC 3 2 Protein VP2 138950
152 3EPD 4 2 protein VP2 138950
153 3EPF 3 2 Protein VP2 138950
154 2C8I 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
155 1Z7Z 2 2 human coxsackievirus A21 Viral Protein 2 residues 2010-2272 138950
156 1XYR 2 2 Genome polyprotein, Coat protein VP2 residues 96-332 138950
157 1UPN 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
158 1NN8 3 2 coat protein VP2 138950
159 1M11 3 2 COAT PROTEIN VP2 138949
160 1JEW 3 2 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP2 Residues 70-332 138949
161 1DGI 3 2 VP2 138950
162 1D3E 3 2 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP2) 169066
163 1D3I 3 2 PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP2) 169066
164 1QGC 2 2 PROTEIN (VIRUS CAPSID PROTEIN VP2) 12110
165 1VRH 2 2 RHINOVIRUS 14 147712
166 1RUC 2 2 RHINOVIRUS 14 147712
167 1RUD 2 2 RHINOVIRUS 14 147712
168 1RUE 2 2 RHINOVIRUS 14 147712
169 1RUF 2 2 RHINOVIRUS 14 147712
170 1RUG 2 2 RHINOVIRUS 14 147712
171 1RUH 2 2 RHINOVIRUS 14 147712
172 1RUI 2 2 RHINOVIRUS 14 147712
173 1RUJ 2 2 RHINOVIRUS 14 147712
174 1HRV 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
175 2HWB 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
176 2HWC 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
177 2HWD 2 2 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) 147711
178 2HWE 2 2 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) 147711
179 2HWF 2 2 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) 147711
180 1HRI 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
181 1TMF 2 2 THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP2) 1821750
182 1MEC 2 2 MENGO VIRUS COAT PROTEIN (SUBUNIT VP2) 1821749
183 1R09 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
184 1R08 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
185 1RMU 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
186 2R04 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
187 2R06 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
188 2R07 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
189 2RM2 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
190 2RMU 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
191 2RR1 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
192 2RS1 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 169066
193 2RS3 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
194 2RS5 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712