Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56358
95 % 1 2 40120
90 % 1 2 38214
70 % 11 20 3433
50 % 12 22 3096
40 % 12 22 3073
30 % 12 27 447
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 32641
95 % 1 2 33378
90 % 1 2 31910
70 % 12 22 3191
50 % 12 22 3184
40 % 12 22 3081
30 % 62 234 158
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 48206
95 % 1 2 40119
90 % 1 2 38213
70 % 11 22 2676
50 % 12 24 2452
40 % 16 41 408
30 % 66 250 144
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 6166
95 % 11 17 4313 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 4248
70 % 11 18 4131
50 % 11 18 3967
40 % 11 18 3767
30 % 11 18 3438

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Q4W 2 2 Coxsackievirus capsid protein VP2 138950
2 4Q4X 2 2 Coxsackievirus capsid protein VP2 138950
3 4Q4Y 2 2 Coxsackievirus capsid protein VP2 138950
4 1QQP 2 2 PROTEIN (GENOME POLYPROTEIN) STRAIN BFS, 1860 12110
5 1ZBA 2 2 Coat protein VP2 12110
6 4IV1 2 B Capsid protein VP2 UNP RESIDUES 287-504 12110
7 1AYM 2 2 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
8 4WM8 2 B VP2 138951
9 5NE4 2 2 O PanAsia VP2 12110
10 5BNP 2 B Capsid protein VP2 UNP residues 70-317 138951
11 3VBH 2 B Genome polyprotein, capsid protein VP2 138948
12 1BBT 2 2 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) 12110
13 1PVC 3 2 POLIOVIRUS TYPE 3, SABIN STRAIN P3/SABIN P3/LEON/12A(1)B 138950
14 5BNO 2 B Capsid protein VP2 UNP residues 70-317 138951
15 5D8A 2 B VP2 12110
16 1FPN 2 2 COAT PROTEIN VP2 147711
17 1ND2 2 B coat protein VP2 147711
18 4WM7 2 B VP2 138951
19 1HXS 2 2 GENOME POLYPROTEIN, COAT PROTEIN VP2 RESIDUES 69-340 138950
20 5BNN 2 B Capsid protein VP2 UNP residues 70-317 138951
21 5CFD 3 C VP2 1821750
22 1NCQ 2 B COAT PROTEIN VP2 147712
23 5CFC 3 C VP2 residues 154-411 1821750
24 3CJI 3 C Polyprotein sequence database residues 435-673 390157
25 1FOD 2 2 FOOT AND MOUTH DISEASE VIRUS 12110
26 1D4M 2 2 PROTEIN (COXSACKIEVIRUS A9) VP2 138949
27 4RHV 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
28 4GH4 2 B capsid protein VP2 UNP residues 12-218 12110
29 1EAH 2 2 POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 138950
30 4Q4V 2 2 Coxsackievirus capsid protein VP2 138950
31 1K5M 2 B CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120 THE CHIMERA CONSISTS OF THE HRV14 COAT PROTEIN VP2 (P1B) AND RESIDUES 314-325 OF HIV-1 gp120. 147712
32 1QJU 2 2 PROTEIN VP2 RESIDUES 70-330 147711
33 3VBF 2 B Genome Polyprotein, capsid protein VP2 STRAIN FUYANG, ANHUI. P.R.C/17.08/1 138948
34 2PLV 2 2 HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP2) 138950
35 4PDW 2 B Genome polyprotein resdiues 70-331 147712 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
36 4CDQ 2 B VP2 138948
37 3ZFE 2 B VP2 VIRION OF HUMAN ENTEROVIRUS 71 138948
38 1QJX 2 2 PROTEIN VP2 RESIDUES 70-330 147711
39 1QJY 2 2 PROTEIN VP2 RESIDUES 70-330 147711
40 1NCR 2 B coat protein VP2 147711
41 3VBO 2 B Genome Polyprotein, capsid protein VP2 138948
42 1ZBE 2 2 Coat protein VP2 12110
43 1AYN 2 2 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
44 1C8M 2 2 HUMAN RHINOVIRUS 16 COAT PROTEIN RESIDUES 79-330 147711
45 2MEV 2 2 MENGO VIRUS COAT PROTEIN (SUBUNIT VP2) 1821749
46 1AR7 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
47 1ND3 2 B coat protein VP2 147711
48 4IV3 2 B Capsid protein VP2 UNP RESIDUES 287-504 12110
49 1BEV 2 2 BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 12064
50 4JGY 2 B Polyprotein, capsid protein VP2 STRAIN NINGBO.CHN/028-2/2009 138948
51 1AL2 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
52 1PO1 3 2 POLIOVIRUS TYPE 1 MAHONEY 138950
53 2WZR 2 2 POLYPROTEIN RESIDUES 285-503 12110
54 1AR9 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
55 5C4W 2 B VP2 138948
56 1H8T 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
57 1PO2 3 2 POLIOVIRUS TYPE 1 MAHONEY 138950
58 1ASJ 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
59 1Z7S 2 2 Human COXSACKIEVIRUS A21 Viral Protein 2 138950
60 1OOP 2 B Coat protein VP2 138949
61 4CDX 2 B VP2 138948
62 1FMD 2 2 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) 12110
63 3VDD 2 B Protein VP2 UNP residues 70-330 147711
64 1NA1 2 B Coat protein VP2 147712
65 4CDU 2 B VP2 138948
66 1VBB 3 2 POLIOVIRUS TYPE 3 138950
67 1AR6 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
68 1AR8 3 2 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
69 4N53 2 B Capsid protein VP2 138948
70 4CDW 2 B VP2 138948
71 4CEY 2 B VP2 138948
72 1VBC 3 2 POLIOVIRUS TYPE 3 138950
73 3TN9 2 2 Protein VP2 147711
74 3ZFG 2 B VP2 VIRION OF HUMAN ENTEROVIRUS 71 138948
75 1VBE 3 2 POLIOVIRUS TYPE 3 138950
76 4CEW 2 B VP2 138948
77 3VBS 2 B Genome Polyprotein, capsid protein VP2 138948
78 5ABJ 2 B VP2 UNP RESIDUES 70-323 138948
79 2WS9 2 2 P1 CAPSID PROTEIN VP2, RESIDUES 81-310 47000
80 1VBD 3 2 POLIOVIRUS TYPE 1 MAHONEY P1/MAHONEY 138950
81 1TME 2 2 THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP2) 1821750
82 3ZFF 2 B VP2 138948
83 1RHI 2 2 HUMAN RHINOVIRUS 3 COAT PROTEIN 147712
84 1VBA 3 2 POLIOVIRUS TYPE 3 138950
85 4JGZ 2 B Polyprotein, capsid protein VP2 STRAIN NINGBO.CHN/028-2/2009 138948
86 1MQT 2 B Polyprotein Capsid Protein SVDV COAT PROTEIN VP2 138949
87 1RVF 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN 147712
88 4GB3 2 2 coat protein 2 UNP residues 70-332 138949
89 2X5I 2 B VP2 138949
90 1PIV 3 2 POLIOVIRUS TYPE 3 (SUBUNIT VP2) 138950
91 1COV 2 2 COXSACKIEVIRUS COAT PROTEIN 138949
92 1R1A 2 2 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) 147711
93 1EV1 2 2 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
94 4N43 2 B Capsid protein VP2 EV71 capsid protein VP2 138948
95 3VBR 2 B Genome Polyprotein, capsid protein VP0 138948
96 2XBO 2 2 P1 CAPSID PROTEIN VP2, RESIDUES 81-310 47000
97 1V9U 2 2 Coat protein VP2 147711
98 4AED 2 B VP2 138948
99 3VBU 2 B Genome Polyprotein, capsid protein VP0 138948
100 5DDJ 2 2 Foot and mouth disease virus, VP2 12110
101 3DPR 2 B Protein VP2 147711
102 4L3B 2 B Protein VP2 UNP residues 70-330 147711
103 2WFF 2 2 P1 CAPSID PROTEIN VP2, RESIDUES 81-310 47000
104 6MZI 3 C viral protein 2 UNP residues 70-317 138951
105 6I2K 2 B Polyprotein 138948
106 6IIJ 2 B VP2 138948
107 6AKS 2 B VP2 138948
108 6AKT 2 B VP2 138948
109 6AKU 2 B VP2 138948
110 6HHT 2 B1, B2, E1, E2, H1, H2, K1, K2, N1, N2, Q1, Q2, T1, T2, W1, W2, Z2, c2, f2, i2, l2, o2, r2, u2, x2 Echovirus 18 capsid protein 2 138949
111 6AJ7 4 B Capsid protein VP2 138951
112 6AJ9 6 B Capsid protein VP2 138951
113 6AJ2 2 B Capsid protein VP2 138951
114 6AJ3 2 B Capsid protein VP2 138951
115 6AJ0 2 B Virion protein 2 138951
116 6HBG 2 B Echovirus 18 viral protein 2 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
117 6HBH 2 B Echovirus 18 capsid protein 2 138949
118 6HBJ 2 B Viral protein 2 138949 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
119 6HBK 3 B, E, H, K, N, Q, T, W, Z, c, f Echovirus 18 capsid protein 3 138949
120 6HBL 2 B, E, H, K, N, Q, T, W, Z, c, f, i, l, o, r Echovirus 18 capsid protein 2 138949
121 6ADR 3 B vp2 390157
122 6ADS 3 B VP2 390157
123 6ADT 3 B VP2 390157
124 6ADM 3 B VP2 390157
125 6ACY 2 B VP2 138948
126 6ACZ 2 B VP2 138948
127 6AD0 4 B VP2 138948
128 6ACU 2 B VP2 138948
129 6CX1 3 C Capsid protein VP2 residues 162-429 390157
130 6CSA 3 C viral protein 2 UNP residues 70-317 138951
131 6CSG 3 C viral protein 2 UNP residues 70-317 138951
132 6CSH 3 C viral protein 2 UNP residues 70-317 138951
133 6CRP 3 C viral protein 2 UNP residues 70-317 138951
134 6CRR 3 C viral protein 2 UNP residues 70-317 138951
135 6CRS 3 C viral protein 2 UNP residues 70-317 138951
136 6CRU 3 C viral protein 2 UNP residues 70-317 138951
137 6CS3 3 C viral protein 2 UNP residues 70-317 138951
138 6CS4 3 C viral protein 2 UNP residues 70-317 138951
139 6CS5 3 C viral protein 2 UNP residues 70-317 138951
140 6CS6 3 C viral protein 2 UNP residues 70-317 138951
141 6EIT 2 2 VP2 138950
142 5OYI 2 2, B, E, H, K Genome polyprotein 12110 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.46 | Details 3.6.1.15 | Details
143 5OWX 2 2 Genome polyprotein 12110 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.46 | Details 3.6.1.15 | Details
144 5OSN 2 B Capsid protein 12064
145 5XS4 2 B Genome polyprotein UNP residues 7-=325 138948
146 5XS7 4 B Genome polyprotein UNP residues 70-325 138948
147 5W3L 3 C viral protein 2 UNP residues 70-331 147712
148 5W3M 5 C viral protein 2 UNP residues 70-331 147712
149 5W3O 5 C viral protein 2 UNP residues 70-331 147712
150 5W3E 5 C viral protein 2 UNP residues 70-331 147712
151 5O5P 2 2 Capsid proteins, VP2 138950
152 5O5B 2 2 Capsid proteins 138950
153 5NER 2 2 O PanAsia VP2 12110
154 5NET 2 2 O1 Manisa VP2 12110
155 5NEU 2 2 O1 Manisa VP2 12110
156 5NED 2 B O PanAsia VP2 12110
157 5NEJ 2 2 O1 Manisa VP2 12110
158 5NEM 2 2 O PanAsia VP2 12110
159 5KWL 2 2 VP2 UNP residues 70-337 138950
160 5KTZ 2 2 VP2 UNP residues 70-338 138950
161 5KU0 2 2 VP2 UNP residues 70-338 138950
162 5KU2 2 2 VP2 UNP residues 70-337 138950
163 5K0U 3 C Capsid protein VP2 UNP residues 68-332 463676
164 3JD7 2 2 Capsid protein VP2 UNP residues 70-332 138949
165 3JBC 2 2 Capsid protein VP2 UNP residues 70-341 138950
166 3JBD 2 2 Capsid protein VP2 UNP residues 70-341 138950
167 3JBE 2 2 Capsid protein VP2 UNP residues 70-341 138950
168 3JBF 2 2 Capsid protein VP2 UNP residues 70-341 138950
169 3JBG 2 2 Capsid protein VP2 UNP residues 70-341 138950
170 5AC9 2 2 VP3 FOOT-AND-MOUTH DISEASE VIRUS 12110
171 5ACA 2 2 VP2 FMDV SAT2 SEROTYPE WITH A MUTATION AT VP2 S93Y 12110
172 5A8F 3 C HUMAN SAFFOLD VIRUS-3 VP2 1821750
173 3J9F 2 2 Protein VP2 UNP residues 70-341 138950
174 3J8F 2 2 Capsid protein VP2 UNP residues 70-341 138950
175 4CTF 2 C0, C1, C2, C3, C4, C5, C6, C7, C8, C9, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, CK, CL, CM, CN, CO, CP, CQ, CR, CS, CT, CU, CV, CW, CX, CY, CZ, Ca, Cb, Cc, Cd, Ce, Cf, Cg, Ch, Ci, Cj, Ck, Cl, Cm, Cn, Co, Cp, Cq, Cr, Cs, Ct, Cu, Cv, Cw, Cx EQUINE RHINITIS A VIRUS RESIDUES 81-310 47000
176 4CTG 2 B0, B1, B2, B3, B4, B5, B6, B7, B8, B9, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO, BP, BQ, BR, BS, BT, BU, BV, BW, BX, BY, BZ, Ba, Bb, Bc, Bd, Be, Bf, Bg, Bh, Bi, Bj, Bk, Bl, Bm, Bn, Bo, Bp, Bq, Br, Bs, Bt, Bu, Bv, Bw, Bx P1 RESIDUES 111-310 47000
177 4C0U 2 B VP2 138948
178 4C0Y 2 B VP2 138948
179 4C10 4 B VP3 138948
180 3J48 2 2 Protein VP2 UNP residues 70-341 138950
181 4BIP 2 B VP2 138948
182 4BIQ 2 B VP2 HOMOLOGY MODEL OF COXSACKIEVIRUS A7 EMPTY CAPSID PROTEIN VP2 138948
183 3J3O 5 2 Protein VP2 UNP residues 70-341 138950
184 3J3P 4 2 Protein VP2 UNP residues 70-341 138950
185 3J2J 3 C Protein VP2 UNP residues 79-330 138949
186 3J22 2 B capsid protein VP0 UNP residues 82-318 138948
187 3J23 2 B capsid protein VP0 UNP residues 82-318 138948
188 3IYP 3 C Polyprotein 138949
189 3IYB 4 4 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
190 3IYC 4 4 Genome polyprotein 138950 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
191 3EPC 3 2 Protein VP2 138950
192 3EPD 4 2 protein VP2 138950
193 3EPF 3 2 Protein VP2 138950
194 2C8I 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
195 1Z7Z 2 2 human coxsackievirus A21 Viral Protein 2 residues 2010-2272 138950
196 1XYR 2 2 Genome polyprotein, Coat protein VP2 residues 96-332 138950
197 1UPN 2 B ECHOVIRUS 11 COAT PROTEIN VP2 138949
198 1NN8 3 2 coat protein VP2 138950
199 1M11 3 2 COAT PROTEIN VP2 138949
200 1JEW 3 2 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP2 Residues 70-332 138949
201 1DGI 3 2 VP2 138950
202 1D3E 3 2 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP2) 169066
203 1D3I 3 2 PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP2) 169066
204 1QGC 2 2 PROTEIN (VIRUS CAPSID PROTEIN VP2) 12110
205 1VRH 2 2 RHINOVIRUS 14 147712
206 1RUC 2 2 RHINOVIRUS 14 147712
207 1RUD 2 2 RHINOVIRUS 14 147712
208 1RUE 2 2 RHINOVIRUS 14 147712
209 1RUF 2 2 RHINOVIRUS 14 147712
210 1RUG 2 2 RHINOVIRUS 14 147712
211 1RUH 2 2 RHINOVIRUS 14 147712
212 1RUI 2 2 RHINOVIRUS 14 147712
213 1RUJ 2 2 RHINOVIRUS 14 147712
214 1HRV 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
215 2HWB 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
216 2HWC 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
217 2HWD 2 2 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) 147711
218 2HWE 2 2 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) 147711
219 2HWF 2 2 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2) 147711
220 1HRI 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
221 1TMF 2 2 THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP2) 1821750
222 1MEC 2 2 MENGO VIRUS COAT PROTEIN (SUBUNIT VP2) 1821749
223 1R09 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
224 1R08 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
225 1RMU 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
226 2R04 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
227 2R06 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
228 2R07 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
229 2RM2 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
230 2RMU 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
231 2RR1 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
232 2RS1 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 169066
233 2RS3 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712
234 2RS5 2 2 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) 147712