Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55907
95 % 1 2 39764
90 % 1 2 37874
70 % 11 20 3379
50 % 12 22 3053
40 % 12 22 3042
30 % 12 27 444
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 32347
95 % 1 2 33078
90 % 1 2 31622
70 % 12 22 3134
50 % 12 22 3146
40 % 12 22 3050
30 % 62 228 175
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 47782
95 % 1 2 39763
90 % 1 2 37873
70 % 11 22 2646
50 % 12 24 2426
40 % 16 41 403
30 % 66 244 162
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 6092
95 % 11 17 4235 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 4176
70 % 11 18 4076
50 % 11 18 3930
40 % 11 18 3737
30 % 11 18 3412

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1FMD 1 1 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) 12110
2 1QGC 1 1 PROTEIN (VIRUS CAPSID PROTEIN VP1) 12110