Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55541
95 % 1 2 39492
90 % 1 2 37632
70 % 11 20 3365
50 % 12 22 3037
40 % 12 22 3027
30 % 12 27 439
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 32120
95 % 1 2 32848
90 % 1 2 31417
70 % 12 22 3120
50 % 12 22 3129
40 % 12 22 3036
30 % 62 224 175
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 47457
95 % 1 2 39491
90 % 1 2 37631
70 % 11 22 2634
50 % 12 24 2415
40 % 16 37 411
30 % 66 240 163
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 6053
95 % 11 17 4206 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 4149
70 % 11 18 4050
50 % 11 18 3904
40 % 11 18 3711
30 % 11 18 3384

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1FMD 1 1 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) 12110