Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56887
95 % 1 2 29114
90 % 1 2 27917
70 % 10 13 4644
50 % 11 15 3914
40 % 11 15 3744
30 % 11 15 3459
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 37489
95 % 1 2 28650
90 % 1 2 27568
70 % 11 15 4037
50 % 11 15 3915
40 % 11 15 3745
30 % 60 178 163
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 37372
95 % 1 2 28593
90 % 1 2 27530
70 % 10 13 4639
50 % 11 15 3911
40 % 14 27 317
30 % 63 188 148
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 14793
95 % 10 13 4779
90 % 10 13 4801
70 % 10 13 4741
50 % 10 13 4557
40 % 10 13 4337
30 % 11 20 667

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.