Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59863
95 % 1 2 30698
90 % 1 2 29395
70 % 11 20 3101
50 % 12 22 2732
40 % 12 22 2688
30 % 12 22 2522
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 39535
95 % 1 2 30212
90 % 1 2 29041
70 % 12 22 2768
50 % 12 22 2733
40 % 12 22 2689
30 % 62 192 164
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 39411
95 % 1 2 30154
90 % 1 2 29002
70 % 11 20 3095
50 % 12 22 2731
40 % 15 34 323
30 % 66 203 149
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 15658
95 % 11 18 3558 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 3609
70 % 11 18 3550
50 % 11 18 3460
40 % 11 18 3344
30 % 12 25 653

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.