Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58613
95 % 1 2 30035
90 % 1 2 28782
70 % 10 13 4787
50 % 11 15 4023
40 % 11 15 3851
30 % 11 15 3548
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 38666
95 % 1 2 29561
90 % 1 2 28432
70 % 11 15 4155
50 % 11 15 4024
40 % 11 15 3852
30 % 60 178 170
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 38546
95 % 1 2 29503
90 % 1 2 28393
70 % 10 13 4782
50 % 11 15 4020
40 % 14 27 332
30 % 64 189 154
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 15279
95 % 10 13 4937
90 % 10 13 4952
70 % 10 13 4884
50 % 10 13 4694
40 % 10 13 4459
30 % 11 20 682

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.