Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56254
95 % 1 2 28757
90 % 1 2 27579
70 % 10 13 4589
50 % 11 15 3855
40 % 11 15 3689
30 % 11 15 3412
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 37021
95 % 1 2 28296
90 % 1 2 27232
70 % 11 15 3974
50 % 11 15 3856
40 % 11 15 3690
30 % 60 178 162
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 36905
95 % 1 2 28240
90 % 1 2 27194
70 % 10 13 4586
50 % 11 15 3852
40 % 14 27 308
30 % 63 187 148
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 14601
95 % 10 13 4719
90 % 10 13 4740
70 % 10 13 4685
50 % 10 13 4506
40 % 10 13 4292
30 % 11 20 661

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.