1FM9

THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETERODIMER OF THE HUMAN RXRALPHA AND PPARGAMMA LIGAND BINDING DOMAINS RESPECTIVELY BOUND WITH 9-CIS RETINOIC ACID AND GI262570 AND CO-ACTIVATOR PEPTIDES.


Sequence Similarity Clusters for the Entities in PDB 1FM9

Entity #1 | Chains: A
RETINOIC ACID RECEPTOR RXR-ALPHA protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 59 305
95 % 27 63 356 Flexibility: Medium
Max RMSD: 13.2, Avg RMSD: 4.4
PDBFlex
90 % 28 65 367
70 % 28 81 306
50 % 28 81 369
40 % 32 94 312
30 % 654 1253 8
Entity #2 | Chains: D
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 55 146 108
95 % 60 169 117 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.7
PDBFlex
90 % 60 169 121
70 % 60 169 138
50 % 89 226 107
40 % 89 226 131
30 % 655 1253 8
Entity #3 | Chains: B,E
STEROID RECEPTOR COACTIVATOR protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 19 1355
95 % 8 19 1593
90 % 8 19 1626
70 % 8 19 1642
50 % 8 19 1690
40 % 8 19 1685
30 % 8 19 1656

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5HJS 2 C, D Nuclear receptor coactivator 1 9606 2.3.1.48 | Details
2 3BEJ 2 E, F Nuclear receptor coactivator 1 residues 676-700 9606 2.3.1.48 | Details
3 4DM6 2 E, F Nuclear receptor coactivator 1 unp residues 676-700 9606 2.3.1.48 | Details
4 5JI0 3 E, F Nuclear receptor coactivator 1 Ac-CPSSHSSLTERHKILHRLLQEGSPS-amide 9606 2.3.1.48 | Details
5 3IPQ 2 B Nuclear receptor coactivator 1 Steroid receptor co-activator 1: UNP residues 676-700 9606 2.3.1.48 | Details
6 1NRL 2 C, D Nuclear Receptor Coactivator 1 isoform 3 Residues 676-700 9606 2.3.1.48 | Details
7 3KMG 2 B, E Steroid Receptor Coactivator-1
8 1FM9 3 B, E STEROID RECEPTOR COACTIVATOR SRC-1 PEPTIDE 9606 2.3.1.48 | Details
9 1FM6 3 B, E, V, Y STEROID RECEPTOR COACTIVATOR SRC-1 PEPTIDE 9606 2.3.1.48 | Details
10 4DM8 2 C, D Nuclear receptor coactivator 1 unp residues 676-700 9606 2.3.1.48 | Details
11 4HEE 2 Y Nuclear receptor coactivator 1 UNP Residues 676-700 9606 2.3.1.48 | Details
12 1K74 3 B, E steroid receptor coactivator src-1 peptide 9606 2.3.1.48 | Details
13 1RDT 2 B LxxLL motif coactivator LxxLL peptide 9606 2.3.1.48 | Details
14 3IPS 2 C, D Nuclear receptor coactivator 1 Steroid receptor co-activator 1: UNP residues 676-700 9606 2.3.1.48 | Details
15 3IPU 2 C, D Nuclear receptor coactivator 1 Steroid receptor co-activator 1: UNP residues 676-700 9606 2.3.1.48 | Details
16 5X0R 2 C, D Nuclear receptor coactivator 1 9606 2.3.1.48 | Details
17 5AVL 2 B Nuclear receptor coactivator 1 UNP residues 676-700 9606 2.3.1.48 | Details
18 1P8D 2 C, D nuclear receptor coactivator 1 isoform 3 Steroid Receptor Co-activator 1 (residues 676-700) 9606 2.3.1.48 | Details
19 5AVI 2 B, D Nuclear receptor coactivator 1 UNP residues 676-700 9606 2.3.1.48 | Details