1FM9

THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETERODIMER OF THE HUMAN RXRALPHA AND PPARGAMMA LIGAND BINDING DOMAINS RESPECTIVELY BOUND WITH 9-CIS RETINOIC ACID AND GI262570 AND CO-ACTIVATOR PEPTIDES.


Sequence Similarity Clusters for the Entities in PDB 1FM9

Entity #1 | Chains: A
RETINOIC ACID RECEPTOR RXR-ALPHA protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 60 307
95 % 27 64 356 Flexibility: Medium
Max RMSD: 13.2, Avg RMSD: 4.4
PDBFlex
90 % 28 66 369
70 % 28 82 316
50 % 28 82 378
40 % 32 95 326
30 % 667 1278 8
Entity #2 | Chains: D
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 55 148 110
95 % 60 171 119 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.6
PDBFlex
90 % 60 171 122
70 % 60 171 141
50 % 91 230 109
40 % 91 230 129
30 % 668 1278 8
Entity #3 | Chains: B,E
STEROID RECEPTOR COACTIVATOR protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 19 1413
95 % 8 19 1653
90 % 8 19 1686
70 % 8 19 1693
50 % 8 19 1738
40 % 8 19 1731
30 % 8 19 1693

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5HJS 2 C, D Nuclear receptor coactivator 1 9606 2.3.1.48 | Details
2 3BEJ 2 E, F Nuclear receptor coactivator 1 residues 676-700 9606 2.3.1.48 | Details
3 4DM6 2 E, F Nuclear receptor coactivator 1 unp residues 676-700 9606 2.3.1.48 | Details
4 5JI0 3 E, F Nuclear receptor coactivator 1 Ac-CPSSHSSLTERHKILHRLLQEGSPS-amide 9606 2.3.1.48 | Details
5 3IPQ 2 B Nuclear receptor coactivator 1 Steroid receptor co-activator 1: UNP residues 676-700 9606 2.3.1.48 | Details
6 1NRL 2 C, D Nuclear Receptor Coactivator 1 isoform 3 Residues 676-700 9606 2.3.1.48 | Details
7 3KMG 2 B, E Steroid Receptor Coactivator-1
8 1FM9 3 B, E STEROID RECEPTOR COACTIVATOR SRC-1 PEPTIDE 9606 2.3.1.48 | Details
9 1FM6 3 B, E, V, Y STEROID RECEPTOR COACTIVATOR SRC-1 PEPTIDE 9606 2.3.1.48 | Details
10 4DM8 2 C, D Nuclear receptor coactivator 1 unp residues 676-700 9606 2.3.1.48 | Details
11 4HEE 2 Y Nuclear receptor coactivator 1 UNP Residues 676-700 9606 2.3.1.48 | Details
12 1K74 3 B, E steroid receptor coactivator src-1 peptide 9606 2.3.1.48 | Details
13 1RDT 2 B LxxLL motif coactivator LxxLL peptide 9606 2.3.1.48 | Details
14 3IPS 2 C, D Nuclear receptor coactivator 1 Steroid receptor co-activator 1: UNP residues 676-700 9606 2.3.1.48 | Details
15 3IPU 2 C, D Nuclear receptor coactivator 1 Steroid receptor co-activator 1: UNP residues 676-700 9606 2.3.1.48 | Details
16 5X0R 2 C, D Nuclear receptor coactivator 1 9606 2.3.1.48 | Details
17 5AVL 2 B Nuclear receptor coactivator 1 UNP residues 676-700 9606 2.3.1.48 | Details
18 1P8D 2 C, D nuclear receptor coactivator 1 isoform 3 Steroid Receptor Co-activator 1 (residues 676-700) 9606 2.3.1.48 | Details
19 5AVI 2 B, D Nuclear receptor coactivator 1 UNP residues 676-700 9606 2.3.1.48 | Details