1FM9

THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETERODIMER OF THE HUMAN RXRALPHA AND PPARGAMMA LIGAND BINDING DOMAINS RESPECTIVELY BOUND WITH 9-CIS RETINOIC ACID AND GI262570 AND CO-ACTIVATOR PEPTIDES.


Sequence Similarity Clusters for the Entities in PDB 1FM9

Entity #1 | Chains: A
RETINOIC ACID RECEPTOR RXR-ALPHA protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 63 309
95 % 28 67 360 Flexibility: Medium
Max RMSD: 13.2, Avg RMSD: 4.4
PDBFlex
90 % 29 69 373
70 % 29 85 324
50 % 29 85 388
40 % 33 98 346
30 % 684 1315 8
Entity #2 | Chains: D
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 159 109
95 % 67 184 114 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.6
PDBFlex
90 % 67 184 120
70 % 67 184 136
50 % 98 243 109
40 % 98 243 131
30 % 685 1315 8
Entity #3 | Chains: B,E
STEROID RECEPTOR COACTIVATOR protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 19 1479
95 % 8 19 1722
90 % 8 19 1755
70 % 8 19 1775
50 % 8 19 1802
40 % 8 19 1801
30 % 8 19 1747

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3U9Q 1 A Peroxisome proliferator-activated receptor gamma Ligand Binding Domain, UNP residues 236-504 9606
2 3B1M 1 A Peroxisome proliferator-activated receptor gamma ligand binding domain, UNP residues 234-505 9606
3 3V9T 1 A Peroxisome proliferator-activated receptor gamma ligand binding domain, UNP residues 234-505 9606
4 3V9V 1 A Peroxisome proliferator-activated receptor gamma ligand binding domain, UNP residues 234-505 9606
5 5Y2T 1 A, B Peroxisome proliferator-activated receptor gamma UNP residues 235-505 9606
6 4CI5 1 A, B PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA LIGAND BINDING DOMAIN, RESIDUES 206-477 9606
7 5Z6S 1 A Peroxisome proliferator-activated receptor gamma 9606
8 5Y2O 1 A, B Peroxisome proliferator-activated receptor gamma UNP residues 235-505 9606
9 5Z5S 1 A Peroxisome proliferator-activated receptor gamma 9606
10 5GTN 1 A Peroxisome proliferator-activated receptor gamma UNP RESIDUES 223-505 9606
11 2XKW 1 A, B PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA LIGAND BINDING DOMAIN, RESIDUES 204-477 9606
12 3ET3 1 A Peroxisome proliferator-activated receptor gamma LIGAND BINDING DOMAIN 9606
13 4Y29 1 A Peroxisome proliferator-activated receptor gamma UNP residues 236-504 9606
14 1ZGY 1 A Peroxisome proliferator activated receptor gamma PPARgamma Ligand Binding Domain 9606
15 3LMP 1 A Peroxisome proliferator-activated receptor gamma UNP residues 234-505 9606
16 2FVJ 1 A Peroxisome proliferator-activated receptor gamma LIGAND BINDING DOMAIN, RESIDUES 207-477 9606
17 5JI0 2 D Peroxisome proliferator-activated receptor gamma 9606
18 5TWO 1 A Peroxisome proliferator-activated receptor gamma lignad binding domain (UNP residues 234-505) 9606
19 4F9M 1 A Peroxisome proliferator-activated receptor gamma Ligand binding domain, UNP residues 234-505 9606
20 5YCP 1 A Peroxisome proliferator-activated receptor gamma UNP RESIDUES 223-505 9606
21 4A4W 1 A, B PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA LIGAND BINDING DOMAIN, RESIDUES 195-477 9606
22 5UGM 1 A, B Peroxisome proliferator-activated receptor gamma UNP residues 235-505 9606
23 2YFE 1 A, B PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA LIGAND BINDING DOMAIN, RESIDUES 195-477 9606
24 3FEJ 1 A Peroxisome proliferator-activated receptor gamma PPAR gamma ligand binding domain 9606
25 2HFP 1 A Peroxisome proliferator-activated receptor gamma Ligand Binding Domain (residues 234-505) 9606
26 2Q5S 1 A, B Peroxisome Proliferator-Activated Receptor gamma Ligand binding domain 9606
27 4A4V 1 A, B PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA LIGAND BINDING DOMAIN, RESIDUES 195-477 9606
28 6MD0 1 A, B Peroxisome proliferator-activated receptor gamma 9606
29 3VSO 1 A, B Peroxisome proliferator-activated receptor gamma Ligand binding domain 9606
30 2GTK 1 A Peroxisome proliferator-activated receptor gamma 9606
31 3KMG 1 A, D Peroxisome proliferator-activated receptor gamma UNP residues 234-505 9606
32 3B0Q 1 A, B Peroxisome proliferator-activated receptor gamma UNP RESIDUES 231-504 9606
33 2ZVT 1 A, B Peroxisome proliferator-activated receptor gamma Ligand-binding domain 9606
34 5HZC 1 A, B Peroxisome proliferator-activated receptor gamma 9606
35 3NOA 1 A, B Peroxisome proliferator-activated receptor gamma lignad binding domain 9606
36 5LSG 1 A, B Peroxisome proliferator-activated receptor gamma UNP residues 223-505 9606
37 3V9Y 1 A Peroxisome proliferator-activated receptor gamma ligand binding domain, UNP residues 234-505 9606
38 2Q59 1 A Peroxisome Proliferator-Activated Receptor gamma CYS A 285 IS 2-HYDROXYETHYLATED Ligand binding domain 9606
39 2Q59 2 B Peroxisome Proliferator-Activated Receptor gamma Ligand binding domain 9606
40 2HWQ 1 A, B Peroxisome proliferator-activated receptor gamma Ligand binding domain 9606
41 6AD9 1 A Peroxisome proliferator-activated receptor gamma ligand binding domain 9606
42 3ADX 1 A, B Peroxisome proliferator-activated receptor gamma ligand-binding domain, residues in UNP 223-505 9606
43 2Q61 1 A, B Peroxisome Proliferator-Activated Receptor gamma Ligand binding domain 9606
44 3TY0 1 A, B Peroxisome proliferator-activated receptor gamma 9606
45 3T03 1 A, B Peroxisome proliferator-activated receptor gamma UNP residues 234-505 9606
46 5GTO 1 A Peroxisome proliferator-activated receptor gamma UNP RESIDUES 1-283 9606
47 6MCZ 1 A, B Peroxisome proliferator-activated receptor gamma 9606
48 4XUH 1 A, B Peroxisome proliferator-activated receptor gamma UNP residues 232-505 9606
49 4R06 1 A, B Peroxisome proliferator-activated receptor gamma UNP residues 233-505 9606
50 2F4B 1 A, B Peroxisome proliferator-activated receptor gamma LIGAND BINDING DOMAIN 9606
51 3WMH 1 A, B Peroxisome proliferator-activated receptor gamma Ligand binding domain, UNP residues 223-504 9606
52 5YCN 1 A Peroxisome proliferator-activated receptor gamma UNP RESIDUES 223-505 9606
53 3B0R 1 A, B Peroxisome proliferator-activated receptor gamma UNP RESIDUES 231-504 9606
54 3ADW 1 A, B Peroxisome proliferator-activated receptor gamma ligand-binding domain, residues in UNP 223-505 9606
55 5DWL 1 A Peroxisome proliferator-activated receptor gamma UNP RESIDUES 223-505 9606
56 3PBA 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domain 9606
57 4R2U 1 A, D Peroxisome proliferator-activated receptor gamma UNP residues 231-505 9606
58 3VJH 1 A, B Peroxisome proliferator-activated receptor gamma UNP RESIDUES 223-504 9606
59 3FUR 1 A Peroxisome proliferator-activated receptor gamma LBD (ligand binding domain), UNP residues 234-505 9606
60 3R5N 1 A Peroxisome proliferator-activated receptor gamma ligand binding domain (UNP residues 232-505) 9606
61 5TTO 1 A, B Peroxisome proliferator-activated receptor gamma residues 233-505 9606
62 1FM9 2 D PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA LIGAND BINDING DOMAIN - RESIDUES 206 - 477 9606
63 6F2L 1 A, B Peroxisome proliferator-activated receptor gamma 9606
64 5DVC 1 A Peroxisome proliferator-activated receptor gamma UNP RESIDUES 223-505 9606
65 3G9E 1 A Peroxisome proliferator-activated receptor gamma LIGAND BINDING DOMAIN 9606
66 6MD1 1 A, B Peroxisome proliferator-activated receptor gamma 9606
67 3BC5 1 A Peroxisome proliferator-activated receptor gamma ligand binding domain 9606
68 2PRG 1 A, B PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA LBD (LIGAND BINDING DOMAIN), RESIDUES 207-477 9606
69 6ENQ 1 A, B Peroxisome proliferator-activated receptor gamma 9606
70 6MD2 1 A, B Peroxisome proliferator-activated receptor gamma 9606
71 2I4J 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domain (LBD), residues 223-504 9606
72 2Q5P 1 A, B Peroxisome Proliferator-Activated Receptor gamma Ligand binding domain 9606
73 3SZ1 1 A, B Peroxisome proliferator-activated receptor gamma Ligand binding domain 9606
74 1FM6 2 D, X PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA LIGAND BINDING DOMAIN - RESIDUES 206 - 477 9606
75 4XUM 1 A, B Peroxisome proliferator-activated receptor gamma 9606
76 3H0A 2 D Peroxisome proliferator-activated receptor gamma UNP RESIDUES 234-505 9606
77 6C1I 1 A, B Peroxisome proliferator-activated receptor gamma 9606
78 2ATH 1 A, B Peroxisome proliferator activated receptor gamma ligand binding domain 9606
79 3PO9 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domain 9606
80 4YT1 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domain, UNP residues 223-504 9606
81 3ADV 1 A, B Peroxisome proliferator-activated receptor gamma ligand-binding domain, residues in UNP 223-505 9606
82 3ADS 1 A, B Peroxisome proliferator-activated receptor gamma ligand-binding domain, residues in UNP 223-505 9606
83 4XLD 1 A Peroxisome proliferator-activated receptor gamma UNP residues 203-477 9606
84 3HOD 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domain (LBD), UNP residues 223-504 9606
85 3ET0 1 A, B Peroxisome proliferator-activated receptor gamma LIGAND BINDING DOMAIN 9606
86 5GTP 1 A Peroxisome proliferator-activated receptor gamma UNP RESIDUES 223-505 9606
87 2P4Y 1 A, B Peroxisome proliferator-activated receptor gamma Ligand-binding Domain (LBD), Residues 231-505 9606
88 4OJ4 1 A Peroxisome proliferator-activated receptor gamma Ligand binding domain (UNP residues 232-505) 9606
89 5F9B 1 A, B Peroxisome proliferator-activated receptor gamma UNP residues 195-477 9606
90 2Q8S 1 A, B Peroxisome proliferator-activated receptor gamma Ligand binding domain (residue 235-505) 9606
91 2POB 1 A, B Peroxisome proliferator-activated receptor gamma Ligand binding domain 9606
92 1PRG 1 A, B PROTEIN (PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA) LBD (LIGAND BINDING DOMAIN), RESIDUES 207-476 9606
93 3CS8 1 A Peroxisome proliferator-activated receptor gamma LBD domain (UNP residues 234-504) 9606
94 3AN3 1 A, B Peroxisome proliferator-activated receptor gamma Ligand binding domain 9606
95 2I4Z 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domain (LBD), residues 223-504 9606
96 3VN2 1 A Peroxisome proliferator-activated receptor gamma Ligand biding domain, UNP residues 225-505 9606
97 4HEE 1 X Peroxisome proliferator-activated receptor gamma peroxisome proliferator-activated receptor-gamma (UNP Residues 235-505) 9606
98 2Q6S 1 A, B Peroxisome Proliferator-Activated Receptor gamma Ligand binding domain 9606
99 6MD4 1 A, B Peroxisome proliferator-activated receptor gamma 9606
100 2I4P 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domain (LBD) 9606
101 3AN4 1 A, B Peroxisome proliferator-activated receptor gamma Ligand binding domain 9606
102 5U5L 1 A, B Peroxisome proliferator-activated receptor gamma residues 233-505 9606
103 3GBK 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domian, UNP residues 235-505 9606
104 3QT0 1 A Peroxisome proliferator-activated receptor gamma UNP residues 235-505 9606
105 3OSW 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domain 9606
106 2G0H 1 A, B Peroxisome proliferator-activated receptor gamma Ligand binding domain(residues 207-477) 9606
107 1K74 2 D Peroxisome proliferator activated receptor gamma ligand binding domain residues - 206 - 477 9606
108 1RDT 3 D Peroxisome proliferator activated receptor gamma ligand binding doamin 9606
109 2ZK2 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domain 9606
110 3VSP 1 A, B Peroxisome proliferator-activated receptor gamma Ligand binding domain 9606
111 2HWR 1 A, B Peroxisome proliferator-activated receptor gamma Ligand binding domain 9606
112 3OSI 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domain 9606
113 3IA6 1 A, B Peroxisome proliferator-activated receptor gamma UNP residue 235-505 9606
114 1I7I 1 A, B PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA LIGAND BINDING DOMAIN 9606
115 4XTA 1 A, B Peroxisome proliferator-activated receptor gamma UNP residues 232-505 9606
116 3R8I 1 A, B Peroxisome proliferator-activated receptor gamma unp residues 223-505 9606
117 3R8A 1 A, B Peroxisome proliferator-activated receptor gamma 9606
118 4PVU 1 A, B Peroxisome proliferator-activated receptor gamma Ligand Binding Domain, UNP RESIDUES 223-505 9606
119 3CWD 1 A, B Peroxisome proliferator-activated receptor gamma PPAR gamma LBD domain 9606
120 1ZEO 1 A, B Peroxisome proliferator activated receptor gamma Ligand Binding Domain (LBD), residues 203-477 9606
121 2G0G 1 A, B Peroxisome proliferator-activated receptor gamma Ligand binding domain(residues 207-477) 9606
122 2ZNO 1 A, B Peroxisome proliferator-activated receptor gamma Ligand binding domain 9606
123 1KNU 1 A, B PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA LIGAND BINDING DOMAIN 9606
124 2ZK0 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domain 9606
125 5DV8 1 A Peroxisome proliferator-activated receptor gamma UNP RESIDUES 223-505 9606
126 3D6D 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domain (LBD), UNP residues 223-504 9606
127 3VJI 1 A, B Peroxisome proliferator-activated receptor gamma UNP RESIDUES 223-504 9606
128 3K8S 1 A, B Peroxisome proliferator-activated receptor gamma UNP residues 234-505, Ligand binding domain 9606
129 6C5Q 1 A Peroxisome proliferator-activated receptor gamma 9606
130 3S9S 1 A Peroxisome proliferator-activated receptor gamma LIGAND BINDING DOMAIN (RESIDUES 234-505) 9606
131 2ZK6 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domain 9606
132 2ZK5 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domain 9606
133 5DV3 1 A Peroxisome proliferator-activated receptor gamma UNP RESIDUES 223-505 9606
134 4PWL 1 A, B Peroxisome proliferator-activated receptor gamma Ligand Binding Domain, UNP RESIDUES 223-505 9606
135 3ADU 1 A, B Peroxisome proliferator-activated receptor gamma ligand-binding domain, residues in UNP 223-505 9606
136 4JL4 1 A, B Peroxisome proliferator-activated receptor gamma UNP residues 223-505 9606
137 3ADT 1 A, B Peroxisome proliferator-activated receptor gamma ligand-binding domain, residues in UNP 223-505 9606
138 6AN1 1 A, B Peroxisome proliferator-activated receptor gamma 9606
139 4E4Q 1 A, B Peroxisome proliferator-activated receptor gamma Ligand binding domain (UNP residues 223-505) 9606
140 1WM0 1 X Peroxisome proliferator activated receptor gamma residues 186-477 9606
141 5DV6 1 A Peroxisome proliferator-activated receptor gamma UNP RESIDUES 223-505 9606
142 2Q6R 1 A, B Peroxisome Proliferator-Activated Receptor gamma Ligand binding domain 9606
143 4O8F 1 A, B Peroxisome proliferator-activated receptor gamma Ligand Binding Domain 9606
144 2ZK4 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domain 9606
145 2ZK3 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domain 9606
146 3B3K 1 A, B Peroxisome proliferator-activated receptor gamma UNP residues 223-504 9606
147 2OM9 1 A, B, C, D Peroxisome proliferator-activated receptor gamma Ligand binding domain, residues 232-505 9606
148 2ZK1 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domain 9606
149 3PRG 1 A PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA LIGAND BINDING DOMAIN 9606
150 4E4K 1 A, B Peroxisome proliferator-activated receptor gamma Ligand binding domain (UNP residues 223-505) 9606
151 3CDS 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domain (LBD), UNP residues 223-504 9606
152 5DSH 1 A Peroxisome proliferator-activated receptor gamma UNP RESIDUES 223-505 9606
153 4FGY 1 A Peroxisome proliferator-activated receptor gamma LIGAND BINDING DOMAIN, UNP RESIDUES 235-504 9606
154 3HO0 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domain (LBD), UNP residues 223-504 9606
155 3CDP 1 A, B Peroxisome proliferator-activated receptor gamma ligand binding domain (LBD), UNP residues 223-504 9606
156 4JAZ 1 A, B Peroxisome proliferator-activated receptor gamma UNP residues 223-505 9606
157 6C5T 1 A Peroxisome proliferator-activated receptor gamma 9606
158 4PRG 1 A, B, C, D PROTEIN (PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA) 0072 PARTIAL AGONIST COCRYSTAL LIGAND BINDING DOMAIN, RESIDUES 207-476 9606
159 2QMV 1 A Peroxisome proliferator-activated receptor gamma Ligand Binding Domain, residues 235-504 9606