1FM9

THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETERODIMER OF THE HUMAN RXRALPHA AND PPARGAMMA LIGAND BINDING DOMAINS RESPECTIVELY BOUND WITH 9-CIS RETINOIC ACID AND GI262570 AND CO-ACTIVATOR PEPTIDES.


Sequence Similarity Clusters for the Entities in PDB 1FM9

Entity #1 | Chains: A
RETINOIC ACID RECEPTOR RXR-ALPHA protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 63 292
95 % 28 67 350 Flexibility: Medium
Max RMSD: 13.2, Avg RMSD: 4.4
PDBFlex
90 % 29 69 361
70 % 29 85 313
50 % 29 85 376
40 % 33 98 319
30 % 677 1302 8
Entity #2 | Chains: D
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 59 152 109
95 % 64 177 120 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.6
PDBFlex
90 % 64 177 123
70 % 64 177 139
50 % 95 236 109
40 % 95 236 132
30 % 678 1302 8
Entity #3 | Chains: B,E
STEROID RECEPTOR COACTIVATOR protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 19 1444
95 % 8 19 1688
90 % 8 19 1723
70 % 8 19 1731
50 % 8 19 1770
40 % 8 19 1764
30 % 8 19 1722

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5MKU 1 A Retinoic acid receptor RXR-alpha 9606
2 2P1T 1 A Retinoic acid receptor RXR-alpha ligand binding domain (residues 223-462) 9606
3 4ZSH 1 A Retinoic acid receptor RXR-alpha Ligand binding domain residues 223 - 462 9606
4 3E94 1 A Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
5 1MZN 1 A, C, E, G RXR retinoid X receptor ligand binding domain(residues 223-462) 9606
6 5MJ5 1 A Retinoic acid receptor RXR-alpha 9606
7 5MK4 1 A, C Retinoic acid receptor RXR-alpha UNP residues 229-457 9606
8 1MV9 1 A RXR retinoid X receptor ligand binding domain(residues 223-462) 9606
9 1MVC 1 A RXR retinoid X receptor ligand binding domain(residues 223-462) 9606
10 4RMD 1 A Retinoic acid receptor RXR-alpha ligand binding domain 228-458 9606
11 5JI0 1 A Retinoic acid receptor RXR-alpha 9606
12 4N8R 1 A, B, C, D Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
13 3PCU 1 A Retinoic acid receptor RXR-alpha UNP residues 229-458 9606
14 3FUG 1 A Retinoic acid receptor RXR-alpha LIGAND BINDING DOMAIN (RESIDUES 223-462) 9606
15 4PP5 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain, UNP residues 228-458 9606
16 3OAP 1 A Retinoic acid receptor RXR-alpha hRXRalpha-LBD, UNP residues 228-458 9606
17 3FC6 1 A, C Retinoic acid receptor RXR-alpha 9606
18 4POJ 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain, UNP residues 228-458 9606
19 6A5Y 3 D Retinoic acid receptor RXR-alpha 9606
20 4N5G 1 A, B, C, D Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
21 5EC9 1 A Retinoic acid receptor RXR-alpha 9606
22 1G5Y 1 A, B, C, D RETINOIC ACID RECEPTOR RXR-ALPHA LIGAND BINDING DOMAIN (RESIDUES 225 - 462) 9606
23 4PP3 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain, UNP residues 228-458 9606
24 4K4J 1 A Retinoic acid receptor RXR-alpha ligand binding domain, UNP residues 228-458 9606
25 2P1V 1 A Retinoic acid receptor RXR-alpha ligand binding domain (residues 223-462) 9606
26 2P1U 1 A Retinoic acid receptor RXR-alpha ligand binding domain (residues 223-462) 9606
27 3KWY 1 A Retinoic acid receptor RXR-alpha ligand binding domain 9606
28 5LYQ 1 A Retinoic acid receptor RXR-alpha UNP residues 223-462 9606
29 1FM9 1 A RETINOIC ACID RECEPTOR RXR-ALPHA LIGAND BINDING DOMAIN - RESIDUES 225 - 462 9606
30 3OZJ 1 A, C Retinoic acid receptor RXR-alpha ligand-binding domain, UNP residues 225-462 9606
31 4K6I 1 A Retinoic acid receptor RXR-alpha ligand binding domain, UNP residues 228-458 9606
32 4M8H 1 A Retinoic acid receptor RXR-alpha HRXRALPHA-LBD, UNP RESIDUES 228-458 9606
33 1FM6 1 A, U RETINOIC ACID RECEPTOR RXR-ALPHA LIGAND BINDING DOMAIN - RESIDUES 225 -462 9606
34 3H0A 1 A Retinoic acid receptor RXR-alpha UNP RESIDUES 228-455 9606
35 4RME 1 A Retinoic acid receptor RXR-alpha ligand binding domain 228-458 9606
36 4POH 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain, UNP residues 228-458 9606
37 1FBY 1 A, B RETINOIC ACID RECEPTOR RXR-ALPHA LIGAND BINDING DOMAIN 9606
38 4M8E 1 A Retinoic acid receptor RXR-alpha HRXRALPHA-LBD, UNP RESIDUES 228-458 9606
39 4RFW 1 A Retinoic acid receptor RXR-alpha ligand binding domain residues 228-458 9606
40 1XVP 1 A, C Retinoic acid receptor RXR-alpha LBD domain 9606
41 1XIU 1 A, B RXR-like protein Ligand-binding domain (LBD) 6526
42 5MKJ 1 A Retinoic acid receptor RXR-alpha 9606
43 3FAL 1 A, C Retinoic acid receptor RXR-alpha residues 225-462 9606
44 4OC7 1 A Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
45 1DKF 1 A PROTEIN (RETINOID X RECEPTOR-ALPHA) LIGAND-BINDING DOMAIN 10090
46 1K74 1 A Retinoic acid receptor RXR-alpha ligand binding domain - residues 225 - 462 9606
47 1RDT 1 A Retinoic acid receptor RXR-alpha ligand binding doamin 9606
48 1XV9 1 A, C Retinoic acid receptor RXR-alpha LBD domain 9606
49 5TBP 1 A, B, C, D Retinoic acid receptor RXR-alpha UNP residues 223-462 9606
50 4OZT 2 U Retinoid X receptor UNP residues 222-416 121225
51 5KYA 2 B, F Retinoic acid receptor RXR-beta 9606
52 4RMC 1 A Retinoic acid receptor RXR-alpha ligand binding domain 228-458 9606
53 1G1U 1 A, B, C, D RETINOIC ACID RECEPTOR RXR-ALPHA LIGAND BINDING DOMAIN (RESIDUES 225 - 462) 9606
54 5I4V 2 B, F Retinoic acid receptor RXR-beta,Nuclear receptor coactivator 2 9606
55 2GL8 1 A, B, C, D Retinoic acid receptor RXR-gamma 9606
56 5MMW 1 A Retinoic acid receptor RXR-alpha 9606
57 3A9E 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain 10090
58 3EYB 1 A, B, C, D Nuclear hormone receptor RXR UNP residues 266-484, Ligand binding domain 7739
59 5KYJ 2 B, F Retinoic acid receptor RXR-beta 9606
60 5HJP 1 A, C Retinoic acid receptor RXR-beta 9606
61 4OZR 2 U Retinoid X receptor UNP residues 222-415 121225
62 1LBD 1 A RETINOID X RECEPTOR HISTIDINE TAG PLUS DOMAIN D PLUS LIGAND-BINDING DOMAIN E 9606
63 2ACL 1 A, C, E, G Retinoic acid receptor RXR-alpha 9606
64 3UVV 2 B Retinoic acid receptor RXR-alpha ligand binding domain (UNP Residues 225-462) 9606
65 5Z12 2 B, C Retinoic acid receptor RXR-alpha UNP residues 228-458 9606
66 2ZY0 1 A, C Retinoic acid receptor RXR-alpha Ligand Binding Domain 9606
67 2ZXZ 1 A Retinoic acid receptor RXR-alpha Ligand Binding Domain 9606
68 1UHL 1 A Retinoic acid receptor RXR-beta residues 298-533 9606
69 1Z5X 1 U Ultraspiracle protein (USP) a homologue of RXR 7038
70 3NSQ 1 A, B Retinoid X receptor, alpha ligand binding domain 9606
71 3NSP 1 A, B Retinoid X receptor, alpha ligand binding domain 9606
72 2NXX 1 A, B, C, D Ultraspiracle (USP, NR2B4) Ligand Binding Domain 7070
73 6A5Z 2 D, L Retinoic acid receptor RXR-alpha ligand binding domain 9606
74 4J5X 1 C, D Retinoic acid receptor RXR-alpha, Nuclear receptor coactivator 1 9606 2.3.1.48 | Details
75 3R5M 1 A, C Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
76 4J5W 2 C, D Retinoic acid receptor RXR-alpha, Nuclear receptor coactivator 1 9606 2.3.1.48 | Details
77 3R29 1 A, B Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
78 6A60 3 D Retinoic acid receptor RXR-alpha 9606
79 1H9U 1 A, B, C, D RETINOID X RECEPTOR, BETA LIGAND BINDING DOMAIN RESIDUES 299-522 9606
80 1XDK 1 A, E Retinoic acid receptor RXR-alpha Ligand-Binding Domain 10090
81 1XLS 1 A, B, C, D Retinoic acid receptor RXR-alpha CAR LBD 9606
82 3R2A 1 A, B, C, D Retinoic acid receptor RXR-alpha ligand binding domain (UNP residues 223-462) 9606
83 5GYM 1 A, B, C, D, E, F, G, H Retinoic acid receptor RXR-alpha UNP RESIDUES 227-462 9606
84 2Q60 1 A, B, C, D Retinoid X receptor ligand binding domain 7723
85 4ZO1 3 B Retinoic acid receptor RXR-alpha ligand binding domain, unp residues 231-455 9606