1FM9

THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETERODIMER OF THE HUMAN RXRALPHA AND PPARGAMMA LIGAND BINDING DOMAINS RESPECTIVELY BOUND WITH 9-CIS RETINOIC ACID AND GI262570 AND CO-ACTIVATOR PEPTIDES.


Sequence Similarity Clusters for the Entities in PDB 1FM9

Entity #1 | Chains: A
RETINOIC ACID RECEPTOR RXR-ALPHA protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 60 333
95 % 28 70 350 Flexibility: Medium
Max RMSD: 13.2, Avg RMSD: 4.3
PDBFlex
90 % 29 72 354
70 % 29 84 321
50 % 29 86 369
40 % 29 86 389
30 % 29 86 398
Entity #2 | Chains: D
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 130 114
95 % 73 194 110 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 1.6
PDBFlex
90 % 73 194 115
70 % 19 40 909
50 % 19 40 956
40 % 19 40 993
30 % 19 40 1033
Entity #3 | Chains: B,E
STEROID RECEPTOR COACTIVATOR protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 19 1318
95 % 8 19 1754
90 % 8 19 1804
70 % 8 19 1834
50 % 8 19 1876
40 % 8 19 1923
30 % 8 19 1944

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures