1FM9

THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETERODIMER OF THE HUMAN RXRALPHA AND PPARGAMMA LIGAND BINDING DOMAINS RESPECTIVELY BOUND WITH 9-CIS RETINOIC ACID AND GI262570 AND CO-ACTIVATOR PEPTIDES.


Sequence Similarity Clusters for the Entities in PDB 1FM9

Entity #1 | Chains: A
RETINOIC ACID RECEPTOR RXR-ALPHA protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 60 336
95 % 28 70 348 Flexibility: Medium
Max RMSD: 13.2, Avg RMSD: 4.3
PDBFlex
90 % 29 72 352
70 % 29 84 320
50 % 29 86 373
40 % 29 86 385
30 % 29 86 395
Entity #2 | Chains: D
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 130 113
95 % 73 194 108 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 1.6
PDBFlex
90 % 73 194 115
70 % 19 40 906
50 % 19 40 958
40 % 19 40 995
30 % 19 40 1039
Entity #3 | Chains: B,E
STEROID RECEPTOR COACTIVATOR protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 19 1319
95 % 8 19 1768
90 % 8 19 1811
70 % 8 19 1838
50 % 8 19 1881
40 % 8 19 1926
30 % 8 19 1954

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures