Sequence Similarity Clusters for the Entities in PDB 1FM9

Entity #1 | Chains: A
RETINOIC ACID RECEPTOR RXR-ALPHA protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 51 260
95 % 22 54 347
90 % 23 55 366
70 % 23 69 285
50 % 23 69 319
40 % 27 82 279
30 % 384 776 11
Entity #2 | Chains: D
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 134 87
95 % 48 142 108
90 % 48 142 113
70 % 48 142 128
50 % 59 180 112
40 % 59 180 133
30 % 385 776 11
Entity #3 | Chains: B,E
STEROID RECEPTOR COACTIVATOR protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 17 1091
95 % 7 17 1505
90 % 7 17 1533
70 % 7 17 1566
50 % 7 17 1611
40 % 7 17 1638
30 % 7 17 1578

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.