Sequence Similarity Clusters for the Entities in PDB 1FM6

Entity #1 | Chains: A,U
RETINOIC ACID RECEPTOR RXR-ALPHA protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 51 260
95 % 26 54 347
90 % 27 55 366
70 % 27 69 285
50 % 27 69 319
40 % 31 82 279
30 % 423 776 11
Entity #2 | Chains: D,X
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 134 87
95 % 56 142 108
90 % 56 142 113
70 % 56 142 128
50 % 71 180 112
40 % 71 180 133
30 % 424 776 11
Entity #3 | Chains: B,E,V,Y
STEROID RECEPTOR COACTIVATOR protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 17 1091
95 % 8 17 1505
90 % 8 17 1533
70 % 8 17 1566
50 % 8 17 1611
40 % 8 17 1638
30 % 8 17 1578

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.