Sequence Similarity Clusters for the Entities in PDB 1FM6

Entity #1 | Chains: A,U
RETINOIC ACID RECEPTOR RXR-ALPHA protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 50 261
95 % 25 53 348
90 % 25 53 370
70 % 25 62 308
50 % 25 62 330
40 % 29 75 289
30 % 378 707 12
Entity #2 | Chains: D,X
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 133 73
95 % 56 141 101
90 % 56 141 106
70 % 56 141 122
50 % 71 179 105
40 % 71 179 127
30 % 379 707 12
Entity #3 | Chains: B,E,V,Y
STEROID RECEPTOR COACTIVATOR protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 16 1161
95 % 7 16 1586
90 % 7 16 1625
70 % 7 16 1649
50 % 7 16 1693
40 % 7 16 1710
30 % 7 16 1629

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.