1FM6

THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETERODIMER OF THE HUMAN RXRALPHA AND PPARGAMMA LIGAND BINDING DOMAINS RESPECTIVELY BOUND WITH 9-CIS RETINOIC ACID AND ROSIGLITAZONE AND CO-ACTIVATOR PEPTIDES.


Sequence Similarity Clusters for the Entities in PDB 1FM6

Entity #1 | Chains: A,U
RETINOIC ACID RECEPTOR RXR-ALPHA protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 63 292
95 % 32 67 351 Flexibility: Medium
Max RMSD: 13.2, Avg RMSD: 4.4
PDBFlex
90 % 33 69 362
70 % 33 85 313
50 % 33 85 377
40 % 37 98 323
30 % 739 1305 8
Entity #2 | Chains: D,X
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 70 153 109
95 % 76 178 122 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.6
PDBFlex
90 % 76 178 126
70 % 76 178 142
50 % 111 237 111
40 % 111 237 133
30 % 740 1305 8
Entity #3 | Chains: B,E,V,Y
STEROID RECEPTOR COACTIVATOR protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 19 1456
95 % 9 19 1697
90 % 9 19 1732
70 % 9 19 1740
50 % 9 19 1779
40 % 9 19 1775
30 % 9 19 1733

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures