Sequence Similarity Clusters for the Entities in PDB 1FM6

Entity #1 | Chains: A,U
RETINOIC ACID RECEPTOR RXR-ALPHA protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 51 262
95 % 26 54 357
90 % 27 55 379
70 % 27 70 297
50 % 27 70 326
40 % 31 83 283
30 % 444 806 11
Entity #2 | Chains: D,X
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 137 86
95 % 57 145 109
90 % 57 145 114
70 % 57 145 129
50 % 72 184 113
40 % 72 184 134
30 % 445 806 11
Entity #3 | Chains: B,E,V,Y
STEROID RECEPTOR COACTIVATOR protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 17 1119
95 % 8 17 1545
90 % 8 17 1575
70 % 8 17 1609
50 % 8 17 1643
40 % 8 17 1663
30 % 8 17 1613

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.