Sequence Similarity Clusters for the Entities in PDB 1FLT

Entity #1 | Chains: V,W
VASCULAR ENDOTHELIAL GROWTH FACTOR protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 30 400
95 % 6 35 453 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 6 35 490
70 % 6 37 495
50 % 6 40 516
40 % 6 44 525
30 % 6 49 486
Entity #2 | Chains: X,Y
FMS-LIKE TYROSINE KINASE 1 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 2635
95 % 1 9 3273 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 1 9 3318
70 % 1 9 3279
50 % 1 9 3190
40 % 1 9 3107
30 % 1 9 2913

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures