Sequence Similarity Clusters for the Entities in PDB 1FKO

Entity #1 | Chains: A
HIV-1 RT, A-CHAIN protein, length: 543 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 31 1405
95 % 129 257 113 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 129 257 118
70 % 129 257 131
50 % 130 258 162
40 % 130 259 172
30 % 130 259 191
Entity #2 | Chains: B
HIV-1 RT, B-CHAIN protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 82 416
95 % 125 251 118 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 125 251 122
70 % 125 251 139
50 % 126 253 168
40 % 126 253 182
30 % 126 253 203

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures