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STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FKA
Sequence Clusters for the Sequence Entities in PDB 1FKA
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1518 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21928
95% 226 263 35
90% 226 263 37
70% 226 263 48
50% 291 376 32
40% 291 376 45
30% 291 376 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 49 463
95% 200 221 64
90% 200 221 68
70% 200 221 81
50% 200 221 116
40% 200 221 144
30% 200 221 166
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 200 223 38
95% 200 223 63
90% 200 223 67
70% 200 223 80
50% 285 366 38
40% 285 366 52
30% 285 366 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 111 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 248 32
95% 222 256 40
90% 222 256 44
70% 222 256 56
50% 284 363 40
40% 284 364 54
30% 284 364 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 222 255 26
95% 222 255 43
90% 222 255 46
70% 222 255 58
50% 285 367 37
40% 285 367 51
30% 285 369 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 224 260 18
95% 230 266 34
90% 230 266 36
70% 230 266 47
50% 230 266 88
40% 230 266 112
30% 256 313 95
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 223 259 20
95% 223 260 37
90% 223 260 39
70% 223 260 51
50% 250 308 57
40% 250 309 74
30% 250 309 97
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 221 255 23
95% 221 255 41
90% 223 259 40
70% 223 259 52
50% 287 369 36
40% 288 371 49
30% 297 408 50
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.