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STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FKA
Sequence Clusters for the Sequence Entities in PDB 1FKA
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1518 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 22445
95% 166 197 33
90% 166 197 35
70% 166 197 47
50% 200 276 32
40% 200 276 43
30% 200 276 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 49 492
95% 148 168 61
90% 148 168 64
70% 148 168 80
50% 148 168 117
40% 148 168 139
30% 148 168 161
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 170 37
95% 148 170 59
90% 148 170 63
70% 148 170 78
50% 194 266 37
40% 194 266 49
30% 194 266 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 111 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 182 29
95% 162 190 39
90% 162 190 43
70% 162 190 53
50% 193 263 39
40% 193 264 52
30% 193 264 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 162 189 24
95% 162 189 42
90% 162 189 45
70% 162 189 55
50% 194 267 36
40% 194 267 48
30% 194 269 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 194 18
95% 170 200 29
90% 170 200 30
70% 170 200 44
50% 170 200 86
40% 170 200 108
30% 185 236 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 163 193 19
95% 163 194 36
90% 163 194 38
70% 163 194 49
50% 182 234 56
40% 182 235 74
30% 182 235 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 189 21
95% 161 189 40
90% 163 193 39
70% 163 193 51
50% 196 269 35
40% 197 271 47
30% 218 321 43
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.