Sequence Similarity Clusters for the Entities in PDB 1FKA

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1518 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 30129
95 % 236 280 38
90 % 236 280 44
70 % 236 280 56
50 % 279 439 27
40 % 279 444 37
30 % 279 444 57
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 51 741
95 % 206 237 69
90 % 206 237 71
70 % 206 237 86
50 % 206 237 117
40 % 206 237 141
30 % 206 237 146
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 233 275 30
95 % 233 275 43
90 % 233 275 49
70 % 233 275 60
50 % 273 432 30
40 % 273 435 42
30 % 273 435 59
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 229 265 42
95 % 232 273 45
90 % 232 273 51
70 % 232 273 62
50 % 272 427 32
40 % 272 432 43
30 % 272 432 60
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 232 272 35
95 % 232 272 48
90 % 232 272 53
70 % 232 272 64
50 % 273 427 33
40 % 273 427 45
30 % 273 429 63
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 234 277 28
95 % 240 283 37
90 % 240 283 42
70 % 240 283 52
50 % 240 283 92
40 % 240 283 115
30 % 264 366 95
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 233 276 29
95 % 233 277 40
90 % 233 277 46
70 % 233 277 57
50 % 261 367 67
40 % 261 372 85
30 % 261 372 97
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 231 272 33
95 % 231 272 46
90 % 233 276 47
70 % 233 276 58
50 % 275 432 29
40 % 276 438 40
30 % 315 562 32
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures