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An Information Portal to 110790 Biological Macromolecular Structures

STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FKA
Sequence Clusters for the Sequence Entities in PDB 1FKA
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1518 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 23754
95% 197 228 26
90% 197 228 31
70% 197 228 43
50% 232 313 29
40% 232 314 40
30% 232 314 55
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 49 525
95% 174 194 64
90% 174 194 66
70% 174 194 79
50% 174 194 111
40% 174 194 130
30% 174 194 150
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 223 27
95% 194 223 41
90% 194 223 46
70% 194 223 57
50% 226 303 37
40% 226 303 48
30% 226 303 67
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 111 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 190 213 38
95% 193 221 43
90% 193 221 48
70% 193 221 59
50% 225 300 39
40% 225 301 49
30% 225 301 68
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 193 220 33
95% 193 220 46
90% 193 220 50
70% 193 220 61
50% 226 304 36
40% 226 304 47
30% 226 306 65
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 225 24
95% 201 231 24
90% 201 231 29
70% 201 231 41
50% 201 231 83
40% 201 231 105
30% 218 270 79
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 224 26
95% 194 225 40
90% 194 225 44
70% 194 225 55
50% 215 268 51
40% 215 269 62
30% 215 269 81
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 192 220 31
95% 192 220 44
90% 194 224 45
70% 194 224 56
50% 228 306 34
40% 229 308 44
30% 250 365 40
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.