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An Information Portal to 108263 Biological Macromolecular Structures

STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FKA
Sequence Clusters for the Sequence Entities in PDB 1FKA
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1518 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 23145
95% 176 207 30
90% 176 207 32
70% 176 207 43
50% 211 289 33
40% 211 289 43
30% 211 289 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 49 508
95% 154 174 71
90% 154 174 75
70% 154 174 89
50% 154 174 130
40% 154 174 148
30% 154 174 164
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 202 19
95% 173 202 33
90% 173 202 36
70% 173 202 47
50% 205 279 38
40% 205 279 49
30% 205 279 73
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 111 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 169 192 31
95% 172 200 36
90% 172 200 39
70% 172 200 49
50% 204 276 40
40% 204 277 51
30% 204 277 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 199 24
95% 172 199 39
90% 172 199 41
70% 172 199 52
50% 205 280 37
40% 205 280 48
30% 205 282 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 174 204 17
95% 180 210 29
90% 180 210 31
70% 180 210 42
50% 180 210 82
40% 180 210 107
30% 197 248 87
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 203 18
95% 173 204 32
90% 173 204 34
70% 173 204 44
50% 194 246 54
40% 194 247 71
30% 194 247 94
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 171 199 21
95% 171 199 37
90% 173 203 35
70% 173 203 45
50% 207 282 36
40% 208 284 46
30% 229 338 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.