Sequence Similarity Clusters for the Entities in PDB 1FK9

Entity #1 | Chains: A
HIV-1 RT, A-CHAIN protein, length: 543 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 32 1442
95 % 84 277 88 Flexibility: Medium
Max RMSD: 23.5, Avg RMSD: 3.9
PDBFlex
90 % 84 277 92
70 % 84 277 107
50 % 85 278 144
40 % 85 279 156
30 % 85 279 173
Entity #2 | Chains: B
HIV-1 RT, B-CHAIN protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 83 435
95 % 82 271 109 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.5
PDBFlex
90 % 82 271 115
70 % 82 271 126
50 % 83 273 152
40 % 83 273 167
30 % 83 273 182

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures