Sequence Similarity Clusters for the Entities in PDB 1FJX

Entity #1 | Chains: C,D
DNA (5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3') dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
HHAI DNA METHYLTRANSFERASE protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 36165
95 % 12 31 1675
90 % 12 31 1713
70 % 12 31 1735
50 % 12 31 1782
40 % 12 31 1789
30 % 12 33 1489

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures