Sequence Similarity Clusters for the Entities in PDB 1FJX

Entity #1 | Chains: C,D
DNA (5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3') dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
HHAI DNA METHYLTRANSFERASE protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 33225
95 % 11 30 1650
90 % 11 30 1680
70 % 11 30 1718
50 % 11 30 1752
40 % 11 30 1767
30 % 11 32 1482

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.