Sequence Similarity Clusters for the Entities in PDB 1FJX

Entity #1 | Chains: C,D
DNA (5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3') dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
HHAI DNA METHYLTRANSFERASE protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 36887
95 % 12 31 1737
90 % 12 31 1776
70 % 12 31 1784
50 % 12 31 1827
40 % 12 31 1827
30 % 12 33 1523

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures