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An Information Portal to 110071 Biological Macromolecular Structures

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN
Sequence Clustering and Redundancy Reduction Results
1FJG
Sequence Clusters for the Sequence Entities in PDB 1FJG
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 90 166
95% 78 220 47
90% 78 220 51
70% 78 220 61
50% 93 300 43
40% 93 300 52
30% 106 355 48
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 218 36
95% 78 219 50
90% 78 219 54
70% 78 219 65
50% 99 306 31
40% 99 306 42
30% 112 359 42
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 220 34
95% 78 220 46
90% 78 220 50
70% 78 220 60
50% 93 300 42
40% 108 360 31
30% 108 361 41
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 183 46
95% 78 227 27
90% 78 227 32
70% 93 311 21
50% 93 312 30
40% 93 312 41
30% 93 312 56
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 221 32
95% 78 221 44
90% 78 221 48
70% 78 221 58
50% 96 305 38
40% 96 305 50
30% 109 360 47
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 219 35
95% 78 219 51
90% 78 219 55
70% 78 220 63
50% 78 220 92
40% 78 220 113
30% 78 220 126
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 223 28
95% 82 228 25
90% 82 228 29
70% 82 228 41
50% 100 313 28
40% 100 314 39
30% 100 314 55
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 215 37
95% 78 220 48
90% 78 220 52
70% 78 220 62
50% 78 220 91
40% 78 221 112
30% 96 303 69
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 80 223
95% 78 214 56
90% 78 218 57
70% 78 218 67
50% 78 218 94
40% 78 218 116
30% 78 218 128
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 49 517
95% 73 194 64
90% 73 194 66
70% 73 194 78
50% 73 194 111
40% 73 194 129
30% 73 194 148
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 223 27
95% 79 223 40
90% 79 223 45
70% 79 223 55
50% 94 303 35
40% 94 303 47
30% 94 303 65
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 49 367
95% 78 219 49
90% 78 219 53
70% 78 219 64
50% 78 219 93
40% 78 219 114
30% 78 219 127
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 210 39
95% 78 210 59
90% 78 210 62
70% 78 210 72
50% 78 210 98
40% 78 210 120
30% 78 210 133
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 220 30
95% 78 221 41
90% 78 221 46
70% 78 221 56
50% 93 299 41
40% 93 300 51
30% 93 300 68
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 193 45
95% 72 193 65
90% 72 193 67
70% 72 193 79
50% 75 236 78
40% 75 236 99
30% 75 236 119
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 7119
95% 78 221 42
90% 78 221 47
70% 78 221 57
50% 93 300 39
40% 93 301 49
30% 93 301 67
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 220 33
95% 78 220 45
90% 78 220 49
70% 78 220 59
50% 94 304 34
40% 94 304 46
30% 94 306 64
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 225 24
95% 86 231 23
90% 86 231 28
70% 86 231 39
50% 86 231 82
40% 86 231 104
30% 100 270 77
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 224 26
95% 79 225 38
90% 79 225 42
70% 79 225 52
50% 95 268 50
40% 95 269 60
30% 95 269 80
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 220 31
95% 79 220 43
90% 79 224 43
70% 79 224 53
50% 96 306 33
40% 97 308 43
30% 111 364 40
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.