Sequence Similarity Clusters for the Entities in PDB 1FJG

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 91 211
95 % 102 269 51
90 % 102 269 54
70 % 102 269 65
50 % 125 393 36
40 % 125 393 47
30 % 139 499 35
Entity #11 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 267 39
95 % 102 268 54
90 % 102 268 57
70 % 102 268 69
50 % 131 400 26
40 % 131 400 37
30 % 145 500 32
Entity #12 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 269 36
95 % 102 269 50
90 % 102 269 53
70 % 102 269 64
50 % 125 393 35
40 % 141 499 19
30 % 141 499 33
Entity #13 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 217 50
95 % 102 276 40
90 % 102 276 44
70 % 125 406 22
50 % 125 411 25
40 % 125 411 35
30 % 125 411 55
Entity #14 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 270 34
95 % 102 270 47
90 % 102 270 51
70 % 102 270 61
50 % 128 398 33
40 % 128 398 46
30 % 142 500 36
Entity #15 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 268 38
95 % 102 268 55
90 % 102 268 58
70 % 102 270 62
50 % 102 270 90
40 % 102 270 112
30 % 102 270 124
Entity #16 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 272 30
95 % 106 277 39
90 % 106 277 43
70 % 106 277 55
50 % 132 406 27
40 % 132 409 36
30 % 132 409 56
Entity #17 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 264 40
95 % 102 269 52
90 % 102 269 55
70 % 102 269 66
50 % 102 271 89
40 % 102 271 110
30 % 128 394 63
Entity #18 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 87 246
95 % 102 263 57
90 % 102 267 59
70 % 102 267 70
50 % 102 267 94
40 % 102 267 115
30 % 102 267 127
Entity #19 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 51 692
95 % 92 234 64
90 % 92 234 68
70 % 92 234 80
50 % 92 234 108
40 % 92 234 133
30 % 92 234 142
Entity #2 | Chains: X
FRAGMENT OF MESSENGER RNA rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 272 29
95 % 103 272 43
90 % 103 272 48
70 % 103 272 58
50 % 126 398 30
40 % 126 401 40
30 % 126 401 58
Entity #21 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 51 488
95 % 102 268 53
90 % 102 268 56
70 % 102 268 68
50 % 102 268 92
40 % 102 268 113
30 % 102 268 125
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 259 43
95 % 102 259 59
90 % 102 259 63
70 % 102 259 75
50 % 102 259 97
40 % 102 259 120
30 % 102 259 130
Entity #3 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 269 32
95 % 102 270 44
90 % 102 270 49
70 % 102 270 59
50 % 125 392 34
40 % 125 395 45
30 % 125 395 62
Entity #4 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 233 47
95 % 91 233 65
90 % 91 233 69
70 % 91 233 81
50 % 95 306 83
40 % 95 306 102
30 % 95 306 113
Entity #5 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 8 8648
95 % 102 270 45
90 % 102 270 50
70 % 102 270 60
50 % 125 394 32
40 % 125 397 42
30 % 125 397 61
Entity #6 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 269 35
95 % 102 269 49
90 % 102 269 52
70 % 102 269 63
50 % 126 398 31
40 % 126 398 43
30 % 126 400 59
Entity #7 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 274 27
95 % 110 280 36
90 % 110 280 41
70 % 110 280 52
50 % 110 280 87
40 % 110 280 106
30 % 131 334 90
Entity #8 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 273 28
95 % 103 274 41
90 % 103 274 45
70 % 103 274 56
50 % 126 338 71
40 % 126 341 79
30 % 126 341 93
Entity #9 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 269 33
95 % 103 269 46
90 % 103 273 46
70 % 103 273 57
50 % 128 399 29
40 % 129 403 38
30 % 145 512 30

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.