POP-OUT | CLOSE

An Information Portal to 108124 Biological Macromolecular Structures

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN
Sequence Clustering and Redundancy Reduction Results
1FJG
Sequence Clusters for the Sequence Entities in PDB 1FJG
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 90 158
95% 68 199 41
90% 68 199 43
70% 68 199 55
50% 83 276 41
40% 83 276 54
30% 96 328 50
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 197 29
95% 68 198 45
90% 68 198 47
70% 68 198 59
50% 89 282 35
40% 89 282 45
30% 102 333 45
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 199 25
95% 68 199 40
90% 68 199 42
70% 68 199 54
50% 83 276 42
40% 98 332 35
30% 98 332 46
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 166 36
95% 68 206 31
90% 68 206 33
70% 83 288 24
50% 83 288 34
40% 83 288 44
30% 83 288 69
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 200 22
95% 68 200 38
90% 68 200 40
70% 68 200 51
50% 86 281 39
40% 86 281 50
30% 99 333 49
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 198 26
95% 68 198 46
90% 68 198 48
70% 68 198 60
50% 68 198 92
40% 68 198 114
30% 68 198 137
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 202 20
95% 72 207 30
90% 72 207 32
70% 72 207 43
50% 90 289 33
40% 90 289 43
30% 90 289 67
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 194 30
95% 68 199 42
90% 68 199 44
70% 68 199 56
50% 68 199 89
40% 68 199 112
30% 86 279 76
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 80 222
95% 68 193 50
90% 68 197 49
70% 68 197 61
50% 68 197 93
40% 68 197 116
30% 68 197 138
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 49 507
95% 63 174 71
90% 63 174 75
70% 63 174 88
50% 63 174 128
40% 63 174 146
30% 63 174 164
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 202 19
95% 69 202 33
90% 69 202 36
70% 69 202 47
50% 84 279 38
40% 84 279 49
30% 84 279 73
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 49 357
95% 68 198 44
90% 68 198 46
70% 68 198 58
50% 68 198 91
40% 68 198 113
30% 68 198 136
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 189 32
95% 68 189 52
90% 68 189 55
70% 68 189 67
50% 68 189 111
40% 68 189 134
30% 68 189 153
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 199 23
95% 68 200 35
90% 68 200 38
70% 68 200 48
50% 68 200 88
40% 83 276 53
30% 83 276 75
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 173 48
95% 62 173 72
90% 62 173 76
70% 62 173 90
50% 65 214 76
40% 65 214 102
30% 65 214 122
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 6965
95% 68 200 36
90% 68 200 39
70% 68 200 49
50% 83 276 40
40% 83 277 51
30% 83 277 74
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 199 24
95% 68 199 39
90% 68 199 41
70% 68 199 52
50% 84 280 37
40% 84 280 48
30% 84 282 72
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 204 17
95% 76 210 29
90% 76 210 31
70% 76 210 42
50% 76 210 82
40% 76 210 107
30% 90 248 87
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 203 18
95% 69 204 32
90% 69 204 34
70% 69 204 44
50% 85 246 53
40% 85 247 70
30% 85 247 94
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 199 21
95% 69 199 37
90% 69 203 35
70% 69 203 45
50% 86 282 36
40% 87 284 46
30% 101 337 44
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.