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An Information Portal to 111749 Biological Macromolecular Structures

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN
Sequence Clustering and Redundancy Reduction Results
1FJG
Sequence Clusters for the Sequence Entities in PDB 1FJG
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 89 181
95% 78 219 48
90% 78 219 52
70% 78 219 62
50% 94 300 43
40% 94 300 52
30% 107 364 46
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 217 36
95% 78 218 51
90% 78 218 55
70% 78 218 66
50% 100 306 31
40% 100 306 42
30% 113 368 40
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 219 34
95% 78 219 47
90% 78 219 51
70% 78 219 61
50% 94 300 42
40% 109 369 30
30% 109 370 38
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 182 46
95% 78 226 39
90% 78 226 43
70% 94 311 22
50% 94 312 30
40% 94 312 41
30% 94 312 57
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 220 32
95% 78 220 45
90% 78 220 49
70% 78 220 59
50% 97 305 39
40% 97 305 50
30% 110 369 44
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 218 35
95% 78 218 52
90% 78 218 56
70% 78 219 64
50% 78 219 92
40% 78 219 114
30% 78 219 128
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 222 29
95% 82 227 36
90% 82 227 40
70% 82 227 52
50% 101 313 29
40% 101 314 39
30% 101 314 54
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 214 37
95% 78 219 49
90% 78 219 53
70% 78 219 63
50% 78 219 91
40% 78 220 113
30% 97 303 70
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 80 226
95% 78 213 56
90% 78 217 58
70% 78 217 69
50% 78 217 94
40% 78 217 116
30% 78 217 130
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 49 532
95% 73 194 64
90% 73 194 67
70% 73 194 79
50% 73 194 113
40% 73 194 131
30% 73 194 150
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 222 28
95% 79 222 41
90% 79 222 46
70% 79 222 56
50% 95 303 38
40% 95 303 48
30% 95 303 67
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 49 371
95% 78 218 50
90% 78 218 54
70% 78 218 65
50% 78 218 93
40% 78 218 115
30% 78 218 129
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 209 40
95% 78 209 59
90% 78 209 62
70% 78 209 73
50% 78 209 100
40% 78 209 123
30% 78 209 135
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 219 30
95% 78 220 42
90% 78 220 47
70% 78 220 57
50% 94 299 41
40% 94 300 51
30% 94 300 69
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 193 45
95% 72 193 65
90% 72 193 68
70% 72 193 80
50% 76 237 77
40% 76 237 102
30% 76 237 121
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 8 7269
95% 78 220 43
90% 78 220 48
70% 78 220 58
50% 94 300 40
40% 94 301 49
30% 94 301 68
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 219 33
95% 78 219 46
90% 78 219 50
70% 78 219 60
50% 95 304 37
40% 95 304 47
30% 95 306 63
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 224 25
95% 86 230 24
90% 86 230 29
70% 86 230 41
50% 86 230 83
40% 86 230 108
30% 100 269 80
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 223 27
95% 79 224 40
90% 79 224 44
70% 79 224 54
50% 95 267 51
40% 95 268 64
30% 95 268 83
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 219 31
95% 79 219 44
90% 79 223 45
70% 79 223 55
50% 97 306 35
40% 98 308 43
30% 112 373 37
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.