Sequence Similarity Clusters for the Entities in PDB 1FJ1

Entity #1 | Chains: A,C
HYBRIDOMA ANTIBODY LA2 (LIGHT CHAIN) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41897
95 % 6 8 7228 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.7
PDBFlex
90 % 7 9 6517
70 % 1605 2426 1
50 % 3253 4913 1
40 % 3253 4913 1
30 % 3800 5780 1
Entity #2 | Chains: B,D
HYBRIDOMA ANTIBODY LA2 (HEAVY CHAIN) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41898
95 % 1 1 31864 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 30511
70 % 1569 2376 2
50 % 3254 4913 1
40 % 3254 4913 1
30 % 3801 5780 1
Entity #3 | Chains: E,F
OUTER SURFACE PROTEIN A protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27689
95 % 2 2 23114 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 19 19 3060
70 % 19 19 3033
50 % 19 19 2987
40 % 19 19 2938
30 % 19 19 2744

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures