Sequence Similarity Clusters for the Entities in PDB 1FJ1

Entity #1 | Chains: A,C
HYBRIDOMA ANTIBODY LA2 (LIGHT CHAIN) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42457
95 % 6 8 7338 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.7
PDBFlex
90 % 7 9 6625
70 % 1640 2479 1
50 % 3324 5021 1
40 % 3324 5021 1
30 % 3926 5951 1
Entity #2 | Chains: B,D
HYBRIDOMA ANTIBODY LA2 (HEAVY CHAIN) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42458
95 % 1 1 32277 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 30900
70 % 1604 2429 2
50 % 3325 5021 1
40 % 3325 5021 1
30 % 3927 5951 1
Entity #3 | Chains: E,F
OUTER SURFACE PROTEIN A protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28084
95 % 2 2 23439 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 19 19 3099
70 % 19 19 3066
50 % 19 19 3023
40 % 19 19 2974
30 % 19 19 2775

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures