Sequence Similarity Clusters for the Entities in PDB 1FJ1

Entity #1 | Chains: A,C
HYBRIDOMA ANTIBODY LA2 (LIGHT CHAIN) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40959
95 % 6 8 7071 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.7
PDBFlex
90 % 7 9 6385
70 % 1528 2327 1
50 % 3098 4713 1
40 % 3098 4713 1
30 % 3634 5567 1
Entity #2 | Chains: B,D
HYBRIDOMA ANTIBODY LA2 (HEAVY CHAIN) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40960
95 % 1 1 31199 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 29899
70 % 1495 2280 2
50 % 3099 4713 1
40 % 3099 4713 1
30 % 3635 5567 1
Entity #3 | Chains: E,F
OUTER SURFACE PROTEIN A protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27057
95 % 2 2 22625 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 19 19 2984
70 % 19 19 2952
50 % 19 19 2911
40 % 19 19 2873
30 % 19 19 2681

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.