Sequence Similarity Clusters for the Entities in PDB 1FIU

Entity #1 | Chains: E,F,G,H
DNA (5'-D(*TP*GP*CP*G)-3') dna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: I,J,K,L
DNA (5'-D(P*CP*CP*GP*GP*CP*GP*C)-3') dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,C,D
TYPE II RESTRICTION ENZYME NGOMI protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 12036
95 % 1 2 11693 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 1 2 11532
70 % 1 2 10886
50 % 1 2 9769
40 % 1 2 8889
30 % 1 2 7767

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.