Sequence Similarity Clusters for the Entities in PDB 1FIG

Entity #1 | Chains: L
IGG1-KAPPA 1F7 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60883
95 % 9 20 2837 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 88 146 143
70 % 1823 2362 1
50 % 3697 4781 1
40 % 3697 4781 1
30 % 4370 5635 1
Entity #2 | Chains: H
IGG1-KAPPA 1F7 FAB (HEAVY CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60757
95 % 1 1 42634
90 % 1 1 40573
70 % 1782 2311 2
50 % 3698 4781 1
40 % 3698 4781 1
30 % 4371 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures