Sequence Similarity Clusters for the Entities in PDB 1FIG

Entity #1 | Chains: L
IGG1-KAPPA 1F7 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29859
95 % 8 18 3428 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 89 148 145
70 % 1929 2516 1
50 % 3920 5101 1
40 % 4423 5750 1
30 % 5519 7168 1
Entity #2 | Chains: H
IGG1-KAPPA 1F7 FAB (HEAVY CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49558
95 % 1 1 41022
90 % 1 1 39088
70 % 1896 2475 2
50 % 3921 5101 1
40 % 4424 5750 1
30 % 5520 7168 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures