Sequence Similarity Clusters for the Entities in PDB 1FI8

Entity #1 | Chains: A,B
NATURAL KILLER CELL PROTEASE 1 protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39878
95 % 1 1 30645
90 % 1 1 29535
70 % 2 7 3182
50 % 23 34 1028
40 % 1390 1698 4
30 % 1498 1848 6
Entity #2 | Chains: C,E
ECOTIN protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48118
95 % 1 1 35943 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 34321
70 % 1 1 30505
50 % 1 1 26077
40 % 1 1 22993
30 % 1 1 19476
Entity #3 | Chains: D,F
ECOTIN protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49003
95 % 1 1 36617 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 34963
70 % 1 1 31075
50 % 1 1 26566
40 % 1 1 23448
30 % 1 1 19901

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures