Sequence Similarity Clusters for the Entities in PDB 1FI8

Entity #1 | Chains: A,B
NATURAL KILLER CELL PROTEASE 1 protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 35394
95 % 1 1 30229
90 % 1 1 29010
70 % 1 1 26073
50 % 25 36 1019
40 % 1517 1873 4
30 % 1526 1887 7
Entity #2 | Chains: C,E
ECOTIN protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35396
95 % 1 1 30231 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 29012
70 % 1 1 26075
50 % 1 1 22368
40 % 1 1 19709
30 % 1 1 16476
Entity #3 | Chains: D,F
ECOTIN protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30970
95 % 1 1 26910 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 25932
70 % 1 1 23457
50 % 1 1 20128
40 % 1 1 17770
30 % 1 1 14891

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures