Sequence Similarity Clusters for the Entities in PDB 1FGL

Entity #1 | Chains: A
CYCLOPHILIN A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 70 112 123
95 % 80 128 149 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 80 129 159
70 % 123 186 140
50 % 140 225 120
40 % 146 243 137
30 % 150 253 136
Entity #2 | Chains: B
HIV-1 GAG PROTEIN protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 77098
95 % 1 1 53740
90 % 1 1 50915
70 % 1 1 44529
50 % 1 1 37983
40 % 1 1 33509
30 % 1 1 28448

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures