Sequence Similarity Clusters for the Entities in PDB 1FGL

Entity #1 | Chains: A
CYCLOPHILIN A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 70 112 122
95 % 78 126 149 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 78 127 158
70 % 121 184 139
50 % 138 223 117
40 % 144 241 135
30 % 148 251 135
Entity #2 | Chains: B
HIV-1 GAG PROTEIN protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76244
95 % 1 1 53154
90 % 1 1 50379
70 % 1 1 44070
50 % 1 1 37594
40 % 1 1 33161
30 % 1 1 28149

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures