Sequence Similarity Clusters for the Entities in PDB 1FG2

Entity #1 | Chains: A,D,G,J
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 52 61 196
95 % 55 65 254 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 56 67 260
70 % 655 719 6
50 % 657 724 6
40 % 699 775 10
30 % 784 899 15
Entity #2 | Chains: B,E,H,K
BETA-2 MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 117 135 96
95 % 189 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 189 228 65
70 % 808 916 4
50 % 823 938 3
40 % 823 938 7
30 % 823 938 12
Entity #3 | Chains: C,F,I,L
LCMV PEPTIDIC EPITOPE GP33 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures