Sequence Similarity Clusters for the Entities in PDB 1FG2

Entity #1 | Chains: A,D,G,J
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 66 207
95 % 58 68 257 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 59 70 265
70 % 672 740 6
50 % 683 754 7
40 % 721 806 9
30 % 808 930 12
Entity #2 | Chains: B,E,H,K
BETA-2 MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 45 525
95 % 193 234 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 193 234 66
70 % 829 944 4
50 % 844 966 3
40 % 844 966 6
30 % 844 966 9
Entity #3 | Chains: C,F,I,L
LCMV PEPTIDIC EPITOPE GP33 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures