Sequence Similarity Clusters for the Entities in PDB 1FFV

Entity #1 | Chains: A,D
CUTS, IRON-SULFUR PROTEIN OF CARBON MONOXIDE DEHYDROGENASE protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22895
95 % 1 2 19710 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 19178
70 % 1 2 17716
50 % 8 9 3755
40 % 11 14 2365
30 % 18 23 1254
Entity #2 | Chains: B,E
CUTL, MOLYBDOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE protein, length: 803 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 16782
95 % 1 2 15618 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 2 15337
70 % 1 2 14391
50 % 7 8 3820
40 % 7 8 3676
30 % 11 12 2487
Entity #3 | Chains: C,F
CUTM, FLAVOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37869
95 % 1 2 17759 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 2 17401
70 % 1 2 16170
50 % 7 8 3993
40 % 8 9 3566
30 % 9 10 3004

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures