Sequence Similarity Clusters for the Entities in PDB 1FFU

Entity #1 | Chains: A,D
CUTS, IRON-SULFUR PROTEIN OF CARBON MONOXIDE DEHYDROGENASE protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22230
95 % 2 2 19920 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 19369
70 % 2 2 17792
50 % 9 9 3851
40 % 14 14 2367
30 % 21 23 1283
Entity #2 | Chains: B,E
CUTL, MOLYBDOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE protein, length: 803 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22228
95 % 2 2 19918 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 19367
70 % 2 2 17790
50 % 8 8 4126
40 % 8 8 3906
30 % 12 12 2493
Entity #3 | Chains: C,F
CUTM, FLAVOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22229
95 % 2 2 19919 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 19368
70 % 2 2 17791
50 % 8 8 4127
40 % 9 9 3653
30 % 12 12 2536

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures