Sequence Similarity Clusters for the Entities in PDB 1FFU

Entity #1 | Chains: A,D
CUTS, IRON-SULFUR PROTEIN OF CARBON MONOXIDE DEHYDROGENASE protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22702
95 % 2 2 19568 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 19046
70 % 2 2 17599
50 % 9 9 3721
40 % 13 13 2409
30 % 13 13 2300
Entity #2 | Chains: B,E
CUTL, MOLYBDOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE protein, length: 803 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 16649
95 % 2 2 15508 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 15232
70 % 2 2 14297
50 % 8 8 3786
40 % 8 8 3642
30 % 12 12 2466
Entity #3 | Chains: C,F
CUTM, FLAVOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37584
95 % 2 2 17629 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 17277
70 % 2 2 16063
50 % 8 8 3957
40 % 9 9 3530
30 % 10 10 2971

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures