Sequence Similarity Clusters for the Entities in PDB 1FFP

Entity #1 | Chains: A,D
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B, ALPHA CHAIN protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 61 195
95 % 50 65 252 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 51 67 258
70 % 638 716 6
50 % 640 721 6
40 % 681 772 10
30 % 759 896 15
Entity #2 | Chains: B,E
BETA-2 MICROGLOBULIN BETA CHAIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 110 135 96
95 % 177 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 177 228 65
70 % 784 912 4
50 % 798 934 3
40 % 798 934 7
30 % 798 934 12
Entity #3 | Chains: C,F
SYNTHETIC PEPTIDE WITH SEQUENCE SER-ALA-VAL-TYR-ASN-PHE-ALA-THR-MET protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.