Sequence Similarity Clusters for the Entities in PDB 1FFP

Entity #1 | Chains: A,D
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B, ALPHA CHAIN protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 46 241
95 % 39 50 326
90 % 40 52 340
70 % 580 649 7
50 % 582 654 7
40 % 619 701 11
30 % 690 817 14
Entity #2 | Chains: B,E
BETA-2 MICROGLOBULIN BETA CHAIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 131 92
95 % 163 212 65
90 % 163 212 69
70 % 727 847 5
50 % 739 867 5
40 % 739 867 9
30 % 739 867 13
Entity #3 | Chains: C,F
SYNTHETIC PEPTIDE WITH SEQUENCE SER-ALA-VAL-TYR-ASN-PHE-ALA-THR-MET protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.