Sequence Similarity Clusters for the Entities in PDB 1FFO

Entity #1 | Chains: A,D
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B, ALPHA CHAIN protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 51 65 210
95 % 53 67 254 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 54 69 262
70 % 653 727 6
50 % 655 732 6
40 % 701 793 9
30 % 781 910 12
Entity #2 | Chains: B,E
BETA-2 MICROGLOBULIN BETA CHAIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 45 520
95 % 182 228 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 182 228 67
70 % 800 922 4
50 % 815 944 3
40 % 815 944 6
30 % 815 944 9
Entity #3 | Chains: C,F
PEPTIDE WITH SEQUENCE ALA-ALA-VAL-TYR-ASN-PHE-ALA-THR-MET protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures