Sequence Similarity Clusters for the Entities in PDB 1FFO

Entity #1 | Chains: A,D
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B, ALPHA CHAIN protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 55 207
95 % 48 59 269
90 % 49 61 276
70 % 628 692 6
50 % 630 697 6
40 % 672 748 10
30 % 749 868 15
Entity #2 | Chains: B,E
BETA-2 MICROGLOBULIN BETA CHAIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 133 95
95 % 173 217 64
90 % 173 217 68
70 % 774 885 4
50 % 789 907 3
40 % 789 907 9
30 % 789 907 14
Entity #3 | Chains: C,F
PEPTIDE WITH SEQUENCE ALA-ALA-VAL-TYR-ASN-PHE-ALA-THR-MET protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.