Sequence Similarity Clusters for the Entities in PDB 1FFO

Entity #1 | Chains: A,D
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B, ALPHA CHAIN protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 55 204
95 % 48 59 263 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 49 61 267
70 % 615 679 6
50 % 617 684 6
40 % 658 734 10
30 % 732 851 15
Entity #2 | Chains: B,E
BETA-2 MICROGLOBULIN BETA CHAIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 133 95
95 % 171 215 64
90 % 171 215 68
70 % 759 870 4
50 % 774 892 4
40 % 774 892 8
30 % 774 892 14
Entity #3 | Chains: C,F
PEPTIDE WITH SEQUENCE ALA-ALA-VAL-TYR-ASN-PHE-ALA-THR-MET protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.