Sequence Similarity Clusters for the Entities in PDB 1FFN

Entity #1 | Chains: A,D
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 46 241
95 % 41 50 326
90 % 42 52 340
70 % 596 656 7
50 % 598 661 7
40 % 636 708 11
30 % 712 824 14
Entity #2 | Chains: B,E
BETA-2 MICROGLOBULIN, BETA CHAIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 131 92
95 % 172 212 65
90 % 172 212 70
70 % 749 854 5
50 % 762 874 5
40 % 762 874 9
30 % 762 874 13
Entity #3 | Chains: C,F
SYNTHETIC PEPTIDE WITH SEQUENCE LYS-ALA-VAL-TYR-ASN-PHE-ALA-THR-MET protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.