Sequence Similarity Clusters for the Entities in PDB 1FFN

Entity #1 | Chains: A,D
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 55 201
95 % 49 59 261
90 % 50 61 265
70 % 607 668 7
50 % 609 673 7
40 % 650 723 10
30 % 726 840 15
Entity #2 | Chains: B,E
BETA-2 MICROGLOBULIN, BETA CHAIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 133 95
95 % 175 215 64
90 % 175 215 68
70 % 755 861 5
50 % 770 883 5
40 % 770 883 9
30 % 770 883 14
Entity #3 | Chains: C,F
SYNTHETIC PEPTIDE WITH SEQUENCE LYS-ALA-VAL-TYR-ASN-PHE-ALA-THR-MET protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.