Sequence Similarity Clusters for the Entities in PDB 1FFN

Entity #1 | Chains: A,D
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 50 61 196
95 % 53 65 254 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 54 67 260
70 % 651 719 6
50 % 653 724 6
40 % 695 775 10
30 % 778 899 15
Entity #2 | Chains: B,E
BETA-2 MICROGLOBULIN, BETA CHAIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 116 135 96
95 % 187 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 187 228 65
70 % 803 916 4
50 % 818 938 3
40 % 818 938 7
30 % 818 938 12
Entity #3 | Chains: C,F
SYNTHETIC PEPTIDE WITH SEQUENCE LYS-ALA-VAL-TYR-ASN-PHE-ALA-THR-MET protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures