Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 804
95 % 36 68 636
90 % 36 68 663
70 % 36 68 705
50 % 36 174 198
40 % 36 174 217
30 % 44 506 29
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58062
95 % 1 1 40478
90 % 1 1 38552
70 % 36 68 697
50 % 36 170 205
40 % 36 170 227
30 % 36 170 233
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 405
95 % 36 74 566
90 % 36 74 594
70 % 36 74 625
50 % 36 74 673
40 % 36 74 712
30 % 43 488 35
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 403
95 % 36 74 564
90 % 36 74 592
70 % 36 74 622
50 % 36 76 651
40 % 36 76 693
30 % 36 79 665
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 452
95 % 36 68 637
90 % 36 68 665
70 % 36 68 707
50 % 36 70 729
40 % 36 70 766
30 % 36 70 766
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2129
95 % 36 68 635
90 % 36 68 661
70 % 36 68 703
50 % 36 68 755
40 % 36 72 738
30 % 36 72 737
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 454
95 % 36 68 640
90 % 36 68 667
70 % 36 68 711
50 % 36 70 730
40 % 36 70 767
30 % 36 71 750
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 463
95 % 36 68 633
90 % 36 68 659
70 % 36 68 700
50 % 36 68 752
40 % 36 68 787
30 % 36 173 226
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 411
95 % 36 74 571
90 % 36 74 598
70 % 36 74 631
50 % 36 76 654
40 % 36 78 670
30 % 43 397 57
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 409
95 % 36 74 569
90 % 36 74 597
70 % 36 74 630
50 % 36 178 192
40 % 36 178 208
30 % 36 178 221
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 434
95 % 34 70 615
90 % 34 70 641
70 % 34 70 681
50 % 34 70 731
40 % 34 70 769
30 % 34 70 768
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 413
95 % 36 74 572
90 % 36 74 599
70 % 36 74 632
50 % 36 74 678
40 % 36 74 715
30 % 36 74 716
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 450
95 % 36 68 634
90 % 36 68 660
70 % 36 68 701
50 % 36 68 753
40 % 36 70 763
30 % 36 71 747
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 456
95 % 36 68 642
90 % 36 68 669
70 % 36 68 713
50 % 36 68 760
40 % 36 68 792
30 % 36 68 789
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61371
95 % 3 5 13716
90 % 3 5 13469
70 % 3 5 12638
50 % 3 5 11301
40 % 3 5 10255
30 % 3 5 8904
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67630
95 % 1 1 46877
90 % 1 1 44596
70 % 3 21 2800
50 % 7 30 1872
40 % 7 127 292
30 % 26 150 263
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 457
95 % 36 68 643
90 % 36 68 670
70 % 36 68 716
50 % 36 69 739
40 % 36 69 780
30 % 36 69 779
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69026
95 % 36 68 644
90 % 36 68 671
70 % 36 68 717
50 % 36 171 201
40 % 36 171 224
30 % 36 171 231
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 455
95 % 36 68 641
90 % 36 68 668
70 % 36 68 712
50 % 36 68 759
40 % 36 68 791
30 % 36 167 238
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 449
95 % 36 68 632
90 % 36 68 658
70 % 36 68 699
50 % 36 68 751
40 % 36 172 221
30 % 44 497 32
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2113
95 % 36 68 630
90 % 36 68 656
70 % 36 68 696
50 % 36 169 204
40 % 36 171 223
30 % 36 171 230
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51400
95 % 36 74 555
90 % 36 74 585
70 % 36 74 617
50 % 36 74 667
40 % 36 178 205
30 % 36 178 218
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9669
95 % 36 74 559
90 % 36 74 589
70 % 36 74 621
50 % 36 74 669
40 % 36 76 691
30 % 37 78 674
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 404
95 % 36 74 565
90 % 36 74 593
70 % 36 74 623
50 % 36 74 671
40 % 37 178 207
30 % 37 178 220
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2140
95 % 3 21 2771
90 % 36 68 664
70 % 36 68 706
50 % 51 105 311
40 % 58 120 281
30 % 58 122 279
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60293
95 % 1 1 41719
90 % 1 7 9766
70 % 3 27 2080
50 % 36 74 672
40 % 36 79 658
30 % 36 79 668
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 406
95 % 36 74 567
90 % 36 74 595
70 % 36 74 628
50 % 36 74 677
40 % 37 77 683
30 % 37 78 677

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 12 J 50S ribosomal protein L13P 2238
2 1VQO 12 J 50S ribosomal protein L13P 2238
3 1VQ8 12 J 50S ribosomal protein L13P 2238
4 1S72 12 J 50S ribosomal protein L13P 2238
5 1JJ2 11 I RIBOSOMAL PROTEIN L13 2238
6 1YHQ 12 J 50S ribosomal protein L13P 2238
7 1VQP 12 J 50S ribosomal protein L13P 2238
8 1VQM 12 J 50S ribosomal protein L13P 2238
9 3CC2 10 J 50S ribosomal protein L13P 2238
10 1VQL 12 J 50S ribosomal protein L13P 2238
11 1VQK 12 J 50S ribosomal protein L13P 2238
12 1VQN 13 J 50S ribosomal protein L13P 2238
13 1YIJ 12 J 50S ribosomal protein L13P 2238
14 1YI2 12 J 50S ribosomal protein L13P 2238
15 1VQ9 12 J 50S ribosomal protein L13P 2238
16 1VQ7 12 J 50S ribosomal protein L13P 2238
17 3CCM 10 J 50S ribosomal protein L13P 2238
18 1VQ5 12 J 50S ribosomal protein L13P 2238
19 3CCJ 10 J 50S ribosomal protein L13P 2238
20 3CC7 10 J 50S ribosomal protein L13P 2238
21 1YIT 16 J 50S RIBOSOMAL PROTEIN L13P 2238
22 3CCE 10 J 50S ribosomal protein L13P 2238
23 3G6E 11 J 50S ribosomal protein L13P 2238
24 3CPW 11 I 50S ribosomal protein L13P 2238
25 3CCU 10 J 50S ribosomal protein L13P 2238
26 1VQ6 13 J 50S ribosomal protein L13P 2238
27 1M90 12 K RIBOSOMAL PROTEIN L13 2238
28 3CCL 10 J 50S ribosomal protein L13P 2238
29 1YJW 16 J 50S RIBOSOMAL PROTEIN L13P 2238
30 1YJ9 12 J 50S ribosomal protein L13P 2238
31 3CD6 10 J 50S ribosomal protein L13P 2238
32 3CCV 10 J 50S ribosomal protein L13P 2238
33 3CC4 10 J 50S ribosomal protein L13P 2238
34 2OTL 11 J 50S ribosomal protein L13P 2238
35 3G71 11 J 50S ribosomal protein L13P 2238
36 1FFK 9 G RIBOSOMAL PROTEIN L13 2238
37 1VQ4 12 J 50S ribosomal protein L13P 2238
38 1YJN 12 J 50S ribosomal protein L13P 2238
39 3CMA 10 J 50S ribosomal protein L13P 2238
40 3CCS 10 J 50S ribosomal protein L13P 2238
41 3CCQ 10 J 50S ribosomal protein L13P 2238
42 3I56 10 J 50S ribosomal protein L13P 2238
43 3CCR 10 J 50S ribosomal protein L13P 2238
44 2OTJ 11 J 50S ribosomal protein L13P 2238
45 1KQS 13 I RIBOSOMAL PROTEIN L13 2238
46 3OW2 11 I 50S ribosomal protein L13P 2238
47 3CXC 12 I RIBOSOMAL PROTEIN L13 2238
48 1QVG 12 I 50S ribosomal protein L13P 2238
49 3CME 10 J 50S ribosomal protein L13P 2238
50 2QEX 11 J 50S ribosomal protein L13P 2238
51 1KC8 11 K RIBOSOMAL PROTEIN L13 2238
52 1N8R 11 K 50S ribosomal protein L13P 2238
53 1Q81 12 K 50S ribosomal protein L13P 2238
54 1Q82 12 K 50S ribosomal protein L13P 2238
55 1QVF 12 I 50S ribosomal protein L13P 2238
56 1NJI 11 K 50S ribosomal protein L13P 2238
57 1K73 11 K RIBOSOMAL PROTEIN L13 2238
58 1K9M 11 K RIBOSOMAL PROTEIN L13 2238
59 1KD1 11 K RIBOSOMAL PROTEIN L13 2238
60 3I55 11 J 50S ribosomal protein L13P 2238
61 1K8A 11 K RIBOSOMAL PROTEIN L13 2238
62 1Q86 12 K 50S ribosomal protein L13P 2238
63 1M1K 11 K RIBOSOMAL PROTEIN L13 2238
64 3G4S 11 J 50S ribosomal protein L13P 2238
65 1W2B 14 I 50S RIBOSOMAL PROTEIN L13P 2238
66 2QA4 12 J 50S ribosomal protein L13P 2238
67 1Q7Y 12 K 50S ribosomal protein L13P 2238
68 4V4P 12 AM 50S ribosomal protein L13 274
69 4V4R 34 BN 50S ribosomal protein L13 274
70 4V4S 34 BN 50S ribosomal protein L13 274
71 4V4T 33 BN 50S ribosomal protein L13 274
72 4ADX 20 J RPL13 145262
73 1ML5 34 m 50S RIBOSOMAL PROTEIN L13 562
74 4V42 36 BM 50S RIBOSOMAL PROTEIN L13 274