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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 414 Members. Sequence cutoff: 95% Cluster size: 74 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 12 J 50S ribosomal protein L13P 272569  
2 1VQO 12 J 50S ribosomal protein L13P 2238  
3 1VQ8 12 J 50S ribosomal protein L13P 2238  
4 1S72 12 J 50S ribosomal protein L13P 2238  
5 1JJ2 11 I RIBOSOMAL PROTEIN L13 2238  
6 1YHQ 12 J 50S ribosomal protein L13P 2238  
7 1VQP 12 J 50S ribosomal protein L13P 2238  
8 1VQM 12 J 50S ribosomal protein L13P 2238  
9 3CC2 10 J 50S ribosomal protein L13P 2238  
10 1VQL 12 J 50S ribosomal protein L13P 2238  
11 1VQK 12 J 50S ribosomal protein L13P 2238  
12 1VQN 13 J 50S ribosomal protein L13P 2238  
13 1YIJ 12 J 50S ribosomal protein L13P 2238  
14 1YI2 12 J 50S ribosomal protein L13P 2238  
15 1VQ9 12 J 50S ribosomal protein L13P 2238  
16 1VQ7 12 J 50S ribosomal protein L13P 2238  
17 3CCM 10 J 50S ribosomal protein L13P 272569  
18 1VQ5 12 J 50S ribosomal protein L13P 2238  
19 3CCJ 10 J 50S ribosomal protein L13P 272569  
20 3CC7 10 J 50S ribosomal protein L13P 2238  
21 1YIT 16 J 50S RIBOSOMAL PROTEIN L13P 2238  
22 3CCE 10 J 50S ribosomal protein L13P 272569  
23 3G6E 11 J 50S ribosomal protein L13P 2238  
24 3CPW 11 I 50S ribosomal protein L13P 2238  
25 3CCU 10 J 50S ribosomal protein L13P 272569  
26 1VQ6 13 J 50S ribosomal protein L13P 2238  
27 1M90 12 K RIBOSOMAL PROTEIN L13 2238  
28 3CCL 10 J 50S ribosomal protein L13P 272569  
29 1YJW 16 J 50S RIBOSOMAL PROTEIN L13P 2238  
30 1YJ9 12 J 50S ribosomal protein L13P 2238  
31 3CD6 10 J 50S ribosomal protein L13P 272569  
32 3CCV 10 J 50S ribosomal protein L13P 272569  
33 3CC4 10 J 50S ribosomal protein L13P 272569  
34 2OTL 11 J 50S ribosomal protein L13P 2238  
35 3G71 11 J 50S ribosomal protein L13P 2238  
36 1FFK 9 G RIBOSOMAL PROTEIN L13 2238  
37 1VQ4 12 J 50S ribosomal protein L13P 2238  
38 1YJN 12 J 50S ribosomal protein L13P 2238  
39 3CMA 10 J 50S ribosomal protein L13P 2238  
40 3CCS 10 J 50S ribosomal protein L13P 272569  
41 3CCQ 10 J 50S ribosomal protein L13P 272569  
42 3I56 10 J 50S ribosomal protein L13P 2238  
43 3CCR 10 J 50S ribosomal protein L13P 272569  
44 2OTJ 11 J 50S ribosomal protein L13P 2238  
45 1KQS 13 I RIBOSOMAL PROTEIN L13 2238  
46 3OW2 11 I 50S ribosomal protein L13P 2238  
47 3CXC 12 I RIBOSOMAL PROTEIN L13 2238  
48 1QVG 12 I 50S ribosomal protein L13P 2238  
49 3CME 10 J 50S ribosomal protein L13P 2238  
50 2QEX 11 J 50S ribosomal protein L13P 2238  
51 1KC8 11 K RIBOSOMAL PROTEIN L13 2238  
52 1N8R 11 K 50S ribosomal protein L13P 2238  
53 1Q81 12 K 50S ribosomal protein L13P 2238  
54 1Q82 12 K 50S ribosomal protein L13P 2238  
55 1QVF 12 I 50S ribosomal protein L13P 2238  
56 1NJI 11 K 50S ribosomal protein L13P 2238  
57 1K73 11 K RIBOSOMAL PROTEIN L13 2238  
58 1K9M 11 K RIBOSOMAL PROTEIN L13 2238  
59 1KD1 11 K RIBOSOMAL PROTEIN L13 2238  
60 3I55 11 J 50S ribosomal protein L13P 2238  
61 1K8A 11 K RIBOSOMAL PROTEIN L13 2238  
62 1Q86 12 K 50S ribosomal protein L13P 2238  
63 1M1K 11 K RIBOSOMAL PROTEIN L13 2238  
64 3G4S 11 J 50S ribosomal protein L13P 2238  
65 1W2B 14 I 50S RIBOSOMAL PROTEIN L13P 2238  
66 2QA4 12 J 50S ribosomal protein L13P 2238  
67 1Q7Y 12 K 50S ribosomal protein L13P 2238  
68 4V4P 12 AM 50S ribosomal protein L13 300852  
69 4V4R 34 BN 50S ribosomal protein L13 274  
70 4V4S 34 BN 50S ribosomal protein L13 274  
71 4V4T 33 BN 50S ribosomal protein L13 274  
72 4ADX 20 J RPL13 187420  
73 1ML5 34 m 50S RIBOSOMAL PROTEIN L13 562  
74 4V42 36 BM 50S RIBOSOMAL PROTEIN L13 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 657
95% 36 68 471
90% 36 68 493
70% 36 68 532
50% 36 120 239
40% 36 120 265
30% 41 333 48
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49138
95% 1 1 34441
90% 1 1 32922
70% 36 68 525
50% 36 118 245
40% 36 118 271
30% 36 118 291
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 413
90% 36 74 437
70% 36 74 467
50% 36 74 515
40% 36 74 553
30% 40 325 52
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 411
90% 36 74 435
70% 36 74 465
50% 36 76 494
40% 36 76 532
30% 36 78 517
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 473
90% 36 68 496
70% 36 68 535
50% 36 70 571
40% 36 70 604
30% 36 70 605
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1704
95% 36 68 469
90% 36 68 491
70% 36 68 530
50% 36 68 605
40% 36 70 601
30% 36 71 586
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 475
90% 36 68 498
70% 36 68 537
50% 36 70 574
40% 36 70 608
30% 36 71 588
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 335
95% 36 68 467
90% 36 68 489
70% 36 68 528
50% 36 68 602
40% 36 68 635
30% 36 121 280
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 416
90% 36 74 440
70% 36 74 470
50% 36 76 495
40% 36 78 511
30% 40 285 71
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 415
90% 36 74 439
70% 36 74 469
50% 36 127 221
40% 36 127 249
30% 36 127 266
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 313
95% 34 70 451
90% 34 70 472
70% 34 70 508
50% 34 70 575
40% 34 70 609
30% 34 70 607
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 417
90% 36 74 441
70% 36 74 471
50% 36 74 517
40% 36 74 556
30% 36 74 552
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 468
90% 36 68 490
70% 36 68 529
50% 36 68 603
40% 36 70 600
30% 36 71 585
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 477
90% 36 68 500
70% 36 68 539
50% 36 68 609
40% 36 68 640
30% 36 68 635
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52123
95% 3 5 11506
90% 3 5 11317
70% 3 5 10687
50% 3 5 9601
40% 3 5 8758
30% 3 5 7660
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57793
95% 1 1 40268
90% 1 1 38494
70% 3 21 2300
50% 7 30 1569
40% 7 76 416
30% 26 99 340
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 479
90% 36 68 502
70% 36 68 541
50% 36 69 592
40% 36 69 626
30% 36 69 623
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59080
95% 36 68 480
90% 36 68 503
70% 36 68 542
50% 36 120 240
40% 36 120 267
30% 36 120 286
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 476
90% 36 68 499
70% 36 68 538
50% 36 68 608
40% 36 68 639
30% 36 119 288
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 466
90% 36 68 488
70% 36 68 527
50% 36 68 601
40% 36 119 269
30% 41 328 51
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1687
95% 36 68 463
90% 36 68 486
70% 36 68 524
50% 36 118 244
40% 36 120 264
30% 36 120 283
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43342
95% 36 74 406
90% 36 74 430
70% 36 74 461
50% 36 74 508
40% 36 124 256
30% 36 124 273
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7964
95% 36 74 409
90% 36 74 433
70% 36 74 464
50% 36 74 510
40% 36 76 530
30% 36 77 523
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 412
90% 36 74 436
70% 36 74 466
50% 36 74 513
40% 36 125 253
30% 36 125 270
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1715
95% 3 21 2249
90% 36 68 495
70% 36 68 534
50% 51 95 309
40% 58 105 292
30% 58 107 309
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51134
95% 1 1 35559
90% 1 7 8176
70% 3 27 1695
50% 36 74 514
40% 36 78 508
30% 36 78 518
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 414
90% 36 74 438
70% 36 74 468
50% 36 74 516
40% 37 77 521
30% 37 78 519
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.