Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 44 829
95 % 35 68 665
90 % 35 68 692
70 % 35 68 744
50 % 35 176 200
40 % 35 176 221
30 % 43 513 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59262
95 % 1 1 41301
90 % 1 1 39301
70 % 35 68 736
50 % 35 172 209
40 % 35 172 233
30 % 35 172 238
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 418
95 % 35 74 588
90 % 35 74 619
70 % 35 74 651
50 % 35 74 696
40 % 35 74 735
30 % 42 495 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 416
95 % 35 74 586
90 % 35 74 617
70 % 35 74 648
50 % 35 76 666
40 % 35 76 709
30 % 35 79 678
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 475
95 % 35 68 666
90 % 35 68 694
70 % 35 68 746
50 % 35 70 763
40 % 35 70 799
30 % 35 70 788
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2182
95 % 35 68 664
90 % 35 68 690
70 % 35 68 742
50 % 35 68 793
40 % 35 72 764
30 % 35 72 755
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 476
95 % 35 68 668
90 % 35 68 696
70 % 35 68 749
50 % 35 70 765
40 % 35 70 801
30 % 35 71 772
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 67 489
95 % 35 68 662
90 % 35 68 688
70 % 35 68 739
50 % 35 68 790
40 % 35 68 825
30 % 35 175 232
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 423
95 % 35 74 592
90 % 35 74 623
70 % 35 74 657
50 % 35 76 670
40 % 35 78 692
30 % 42 402 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 422
95 % 35 74 591
90 % 35 74 622
70 % 35 74 656
50 % 35 180 199
40 % 35 180 217
30 % 35 180 226
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 70 454
95 % 33 70 638
90 % 33 70 663
70 % 33 70 717
50 % 33 70 766
40 % 33 70 804
30 % 33 70 792
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 424
95 % 35 74 593
90 % 35 74 624
70 % 35 74 658
50 % 35 74 701
40 % 35 74 738
30 % 35 74 730
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 473
95 % 35 68 663
90 % 35 68 689
70 % 35 68 740
50 % 35 68 791
40 % 35 70 796
30 % 35 71 769
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 478
95 % 35 68 670
90 % 35 68 698
70 % 35 68 751
50 % 35 68 796
40 % 35 68 829
30 % 35 68 814
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62617
95 % 3 5 14045
90 % 3 5 13782
70 % 3 5 12926
50 % 3 5 11528
40 % 3 5 10459
30 % 3 5 9060
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68921
95 % 1 1 47746
90 % 1 1 45380
70 % 3 21 2865
50 % 7 30 1917
40 % 7 129 302
30 % 26 152 267
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 480
95 % 35 68 673
90 % 35 68 701
70 % 35 68 755
50 % 35 69 778
40 % 35 69 815
30 % 35 69 804
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70331
95 % 35 68 674
90 % 35 68 702
70 % 35 68 756
50 % 35 173 205
40 % 35 173 228
30 % 35 173 235
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 477
95 % 35 68 669
90 % 35 68 697
70 % 35 68 750
50 % 35 68 795
40 % 35 68 828
30 % 35 169 242
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 472
95 % 35 68 661
90 % 35 68 687
70 % 35 68 738
50 % 35 68 789
40 % 35 174 226
30 % 43 504 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2166
95 % 35 68 658
90 % 35 68 684
70 % 35 68 734
50 % 35 171 208
40 % 35 173 227
30 % 35 173 234
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52492
95 % 35 74 577
90 % 35 74 609
70 % 35 74 643
50 % 35 74 689
40 % 35 180 215
30 % 35 180 224
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9908
95 % 35 74 582
90 % 35 74 615
70 % 35 74 646
50 % 35 74 691
40 % 35 76 707
30 % 36 78 686
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 417
95 % 35 74 587
90 % 35 74 618
70 % 35 74 649
50 % 35 74 694
40 % 36 180 216
30 % 36 180 225
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2194
95 % 3 21 2836
90 % 35 68 693
70 % 35 68 745
50 % 50 105 322
40 % 57 122 280
30 % 57 124 282
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61521
95 % 1 1 42557
90 % 1 7 10001
70 % 3 27 2134
50 % 35 74 695
40 % 35 79 679
30 % 35 79 680
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 419
95 % 35 74 589
90 % 35 74 620
70 % 35 74 654
50 % 35 74 700
40 % 36 77 702
30 % 36 78 689

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 12 J 50S ribosomal protein L13P 2238
2 1VQO 12 J 50S ribosomal protein L13P 2238
3 1VQ8 12 J 50S ribosomal protein L13P 2238
4 1S72 12 J 50S ribosomal protein L13P 2238
5 1JJ2 11 I RIBOSOMAL PROTEIN L13 2238
6 1YHQ 12 J 50S ribosomal protein L13P 2238
7 1VQP 12 J 50S ribosomal protein L13P 2238
8 1VQM 12 J 50S ribosomal protein L13P 2238
9 3CC2 10 J 50S ribosomal protein L13P 2238
10 1VQL 12 J 50S ribosomal protein L13P 2238
11 1VQK 12 J 50S ribosomal protein L13P 2238
12 1VQN 13 J 50S ribosomal protein L13P 2238
13 1YIJ 12 J 50S ribosomal protein L13P 2238
14 1YI2 12 J 50S ribosomal protein L13P 2238
15 1VQ9 12 J 50S ribosomal protein L13P 2238
16 1VQ7 12 J 50S ribosomal protein L13P 2238
17 3CCM 10 J 50S ribosomal protein L13P 2238
18 1VQ5 12 J 50S ribosomal protein L13P 2238
19 3CC7 10 J 50S ribosomal protein L13P 2238
20 1YIT 16 J 50S RIBOSOMAL PROTEIN L13P 2238
21 3CCE 10 J 50S ribosomal protein L13P 2238
22 3G6E 11 J 50S ribosomal protein L13P 2238
23 3CPW 11 I 50S ribosomal protein L13P 2238
24 3CCU 10 J 50S ribosomal protein L13P 2238
25 1VQ6 13 J 50S ribosomal protein L13P 2238
26 1M90 12 K RIBOSOMAL PROTEIN L13 2238
27 3CCL 10 J 50S ribosomal protein L13P 2238
28 1YJW 16 J 50S RIBOSOMAL PROTEIN L13P 2238
29 1YJ9 12 J 50S ribosomal protein L13P 2238
30 3CD6 10 J 50S ribosomal protein L13P 2238
31 3CCV 10 J 50S ribosomal protein L13P 2238
32 3CC4 10 J 50S ribosomal protein L13P 2238
33 2OTL 11 J 50S ribosomal protein L13P 2238
34 3G71 11 J 50S ribosomal protein L13P 2238
35 1FFK 9 G RIBOSOMAL PROTEIN L13 2238
36 1VQ4 12 J 50S ribosomal protein L13P 2238
37 1YJN 12 J 50S ribosomal protein L13P 2238
38 3CMA 10 J 50S ribosomal protein L13P 2238
39 3CCS 10 J 50S ribosomal protein L13P 2238
40 3CCQ 10 J 50S ribosomal protein L13P 2238
41 3I56 10 J 50S ribosomal protein L13P 2238
42 3CCR 10 J 50S ribosomal protein L13P 2238
43 2OTJ 11 J 50S ribosomal protein L13P 2238
44 1KQS 13 I RIBOSOMAL PROTEIN L13 2238
45 3OW2 11 I 50S ribosomal protein L13P 2238
46 3CXC 12 I RIBOSOMAL PROTEIN L13 2238
47 1QVG 12 I 50S ribosomal protein L13P 2238
48 3CME 10 J 50S ribosomal protein L13P 2238
49 2QEX 11 J 50S ribosomal protein L13P 2238
50 1KC8 11 K RIBOSOMAL PROTEIN L13 2238
51 1N8R 11 K 50S ribosomal protein L13P 2238
52 1Q81 12 K 50S ribosomal protein L13P 2238
53 1Q82 12 K 50S ribosomal protein L13P 2238
54 1QVF 12 I 50S ribosomal protein L13P 2238
55 1NJI 11 K 50S ribosomal protein L13P 2238
56 1K73 11 K RIBOSOMAL PROTEIN L13 2238
57 1K9M 11 K RIBOSOMAL PROTEIN L13 2238
58 1KD1 11 K RIBOSOMAL PROTEIN L13 2238
59 3I55 11 J 50S ribosomal protein L13P 2238
60 1K8A 11 K RIBOSOMAL PROTEIN L13 2238
61 1Q86 12 K 50S ribosomal protein L13P 2238
62 1M1K 11 K RIBOSOMAL PROTEIN L13 2238
63 3G4S 11 J 50S ribosomal protein L13P 2238
64 3CCJ 10 J 50S ribosomal protein L13P 2238
65 1W2B 14 I 50S RIBOSOMAL PROTEIN L13P 2238
66 2QA4 12 J 50S ribosomal protein L13P 2238
67 1Q7Y 12 K 50S ribosomal protein L13P 2238
68 4V4P 12 AM 50S ribosomal protein L13 274
69 4V4R 34 BN 50S ribosomal protein L13 274
70 4V4S 34 BN 50S ribosomal protein L13 274
71 4V4T 33 BN 50S ribosomal protein L13 274
72 4ADX 20 J RPL13 145262
73 1ML5 34 m 50S RIBOSOMAL PROTEIN L13 562
74 4V42 36 BM 50S RIBOSOMAL PROTEIN L13 274