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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 482 Members. Sequence cutoff: 70% Cluster size: 74 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 12 J 50S ribosomal protein L13P 272569  
2 1VQO 12 J 50S ribosomal protein L13P 2238  
3 1VQ8 12 J 50S ribosomal protein L13P 2238  
4 1S72 12 J 50S ribosomal protein L13P 2238  
5 1JJ2 11 I RIBOSOMAL PROTEIN L13 2238  
6 1YHQ 12 J 50S ribosomal protein L13P 2238  
7 1VQP 12 J 50S ribosomal protein L13P 2238  
8 1VQM 12 J 50S ribosomal protein L13P 2238  
9 3CC2 10 J 50S ribosomal protein L13P 2238  
10 1VQL 12 J 50S ribosomal protein L13P 2238  
11 1VQK 12 J 50S ribosomal protein L13P 2238  
12 1VQN 13 J 50S ribosomal protein L13P 2238  
13 1YIJ 12 J 50S ribosomal protein L13P 2238  
14 1YI2 12 J 50S ribosomal protein L13P 2238  
15 1VQ9 12 J 50S ribosomal protein L13P 2238  
16 1VQ7 12 J 50S ribosomal protein L13P 2238  
17 3CCM 10 J 50S ribosomal protein L13P 2238  
18 1VQ5 12 J 50S ribosomal protein L13P 2238  
19 3CCJ 10 J 50S ribosomal protein L13P 2238  
20 3CC7 10 J 50S ribosomal protein L13P 2238  
21 1YIT 16 J 50S RIBOSOMAL PROTEIN L13P 2238  
22 3CCE 10 J 50S ribosomal protein L13P 2238  
23 3G6E 11 J 50S ribosomal protein L13P 2238  
24 3CPW 11 I 50S ribosomal protein L13P 2238  
25 3CCU 10 J 50S ribosomal protein L13P 2238  
26 1VQ6 13 J 50S ribosomal protein L13P 2238  
27 1M90 12 K RIBOSOMAL PROTEIN L13 2238  
28 3CCL 10 J 50S ribosomal protein L13P 2238  
29 1YJW 16 J 50S RIBOSOMAL PROTEIN L13P 2238  
30 1YJ9 12 J 50S ribosomal protein L13P 2238  
31 3CD6 10 J 50S ribosomal protein L13P 2238  
32 3CCV 10 J 50S ribosomal protein L13P 2238  
33 3CC4 10 J 50S ribosomal protein L13P 2238  
34 2OTL 11 J 50S ribosomal protein L13P 2238  
35 3G71 11 J 50S ribosomal protein L13P 2238  
36 1FFK 9 G RIBOSOMAL PROTEIN L13 2238  
37 1VQ4 12 J 50S ribosomal protein L13P 2238  
38 1YJN 12 J 50S ribosomal protein L13P 2238  
39 3CMA 10 J 50S ribosomal protein L13P 2238  
40 3CCS 10 J 50S ribosomal protein L13P 2238  
41 3CCQ 10 J 50S ribosomal protein L13P 2238  
42 3I56 10 J 50S ribosomal protein L13P 2238  
43 3CCR 10 J 50S ribosomal protein L13P 2238  
44 2OTJ 11 J 50S ribosomal protein L13P 2238  
45 1KQS 13 I RIBOSOMAL PROTEIN L13 2238  
46 3OW2 11 I 50S ribosomal protein L13P 2238  
47 3CXC 12 I RIBOSOMAL PROTEIN L13 2238  
48 1QVG 12 I 50S ribosomal protein L13P 2238  
49 3CME 10 J 50S ribosomal protein L13P 2238  
50 2QEX 11 J 50S ribosomal protein L13P 2238  
51 1KC8 11 K RIBOSOMAL PROTEIN L13 2238  
52 1N8R 11 K 50S ribosomal protein L13P 2238  
53 1Q81 12 K 50S ribosomal protein L13P 2238  
54 1Q82 12 K 50S ribosomal protein L13P 2238  
55 1QVF 12 I 50S ribosomal protein L13P 2238  
56 1NJI 11 K 50S ribosomal protein L13P 2238  
57 1K73 11 K RIBOSOMAL PROTEIN L13 2238  
58 1K9M 11 K RIBOSOMAL PROTEIN L13 2238  
59 1KD1 11 K RIBOSOMAL PROTEIN L13 2238  
60 3I55 11 J 50S ribosomal protein L13P 2238  
61 1K8A 11 K RIBOSOMAL PROTEIN L13 2238  
62 1Q86 12 K 50S ribosomal protein L13P 2238  
63 1M1K 11 K RIBOSOMAL PROTEIN L13 2238  
64 3G4S 11 J 50S ribosomal protein L13P 2238  
65 1W2B 14 I 50S RIBOSOMAL PROTEIN L13P 2238  
66 2QA4 12 J 50S ribosomal protein L13P 2238  
67 1Q7Y 12 K 50S ribosomal protein L13P 2238  
68 4V4P 12 AM 50S ribosomal protein L13 300852  
69 4V4R 34 BN 50S ribosomal protein L13 274  
70 4V4S 34 BN 50S ribosomal protein L13 274  
71 4V4T 33 BN 50S ribosomal protein L13 274  
72 4ADX 20 J RPL13 187420  
73 1ML5 34 m 50S RIBOSOMAL PROTEIN L13 562  
74 4V42 36 BM 50S RIBOSOMAL PROTEIN L13 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 680
95% 36 68 483
90% 36 68 506
70% 36 68 546
50% 36 123 238
40% 36 123 267
30% 41 360 46
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50394
95% 1 1 35302
90% 1 1 33721
70% 36 68 539
50% 36 121 245
40% 36 121 272
30% 36 121 289
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 420
90% 36 74 447
70% 36 74 480
50% 36 74 534
40% 36 74 576
30% 40 352 50
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 418
90% 36 74 445
70% 36 74 477
50% 36 76 507
40% 36 76 552
30% 36 78 535
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 329
95% 36 68 485
90% 36 68 509
70% 36 68 549
50% 36 70 595
40% 36 70 632
30% 36 70 632
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1758
95% 36 68 481
90% 36 68 504
70% 36 68 544
50% 36 68 626
40% 36 70 631
30% 36 71 611
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 486
90% 36 68 510
70% 36 68 551
50% 36 70 597
40% 36 70 635
30% 36 71 612
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 339
95% 36 68 479
90% 36 68 502
70% 36 68 542
50% 36 68 623
40% 36 68 656
30% 36 124 276
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 298
95% 36 74 424
90% 36 74 451
70% 36 74 485
50% 36 76 510
40% 36 78 528
30% 40 309 61
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 294
95% 36 74 422
90% 36 74 449
70% 36 74 483
50% 36 130 223
40% 36 130 248
30% 36 130 262
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 317
95% 34 70 463
90% 34 70 485
70% 34 70 520
50% 34 70 598
40% 34 70 636
30% 34 70 634
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 300
95% 36 74 425
90% 36 74 452
70% 36 74 486
50% 36 74 541
40% 36 74 582
30% 36 74 577
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 480
90% 36 68 503
70% 36 68 543
50% 36 68 624
40% 36 70 630
30% 36 71 610
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 488
90% 36 68 512
70% 36 68 553
50% 36 68 629
40% 36 68 660
30% 36 68 657
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53419
95% 3 5 11800
90% 3 5 11604
70% 3 5 10955
50% 3 5 9834
40% 3 5 8984
30% 3 5 7849
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59170
95% 1 1 41194
90% 1 1 39352
70% 3 21 2365
50% 7 30 1605
40% 7 79 410
30% 26 102 336
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 334
95% 36 68 490
90% 36 68 514
70% 36 68 555
50% 36 69 615
40% 36 69 650
30% 36 69 647
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 60478
95% 36 68 491
90% 36 68 515
70% 36 68 556
50% 36 123 239
40% 36 123 268
30% 36 123 284
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 487
90% 36 68 511
70% 36 68 552
50% 36 68 628
40% 36 68 659
30% 36 122 288
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 478
90% 36 68 501
70% 36 68 541
50% 36 68 622
40% 36 122 270
30% 41 355 49
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1738
95% 36 68 475
90% 36 68 498
70% 36 68 536
50% 36 121 244
40% 36 123 266
30% 36 123 283
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44491
95% 36 74 411
90% 36 74 438
70% 36 74 473
50% 36 74 525
40% 36 127 255
30% 36 127 269
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8206
95% 36 74 415
90% 36 74 442
70% 36 74 476
50% 36 74 527
40% 36 76 547
30% 36 77 541
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 419
90% 36 74 446
70% 36 74 478
50% 36 74 531
40% 36 128 251
30% 36 128 266
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1769
95% 3 21 2313
90% 36 68 508
70% 36 68 548
50% 51 95 319
40% 58 105 298
30% 58 107 309
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52428
95% 1 1 36435
90% 1 7 8388
70% 3 27 1741
50% 36 74 532
40% 36 79 517
30% 36 79 527
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 421
90% 36 74 448
70% 36 74 482
50% 36 74 536
40% 37 77 538
30% 37 78 536
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.