Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 881
95 % 35 68 707 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 737
70 % 35 68 793
50 % 35 180 205
40 % 43 546 20
30 % 43 546 34
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61907
95 % 1 1 43206
90 % 1 1 41039
70 % 35 68 785
50 % 35 176 212
40 % 35 176 233
30 % 35 176 243
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 452
95 % 35 74 628 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 657
70 % 35 74 700
50 % 35 74 754
40 % 35 74 790
30 % 42 526 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 450
95 % 35 74 626 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 655
70 % 35 74 697
50 % 35 76 729
40 % 35 76 764
30 % 35 79 725
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 520
95 % 35 68 709 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 740
70 % 35 68 796
50 % 35 70 805
40 % 35 70 844
30 % 35 70 828
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2313
95 % 35 68 706 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 736
70 % 35 68 792
50 % 35 68 836
40 % 35 72 817
30 % 35 72 804
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 521
95 % 35 68 711 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 742
70 % 35 68 798
50 % 35 70 807
40 % 35 70 845
30 % 35 71 815
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 530
95 % 35 68 704 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 35 68 734
70 % 35 68 789
50 % 35 68 833
40 % 35 68 868
30 % 35 179 234
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 457
95 % 35 74 632 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 661
70 % 35 74 707
50 % 35 76 734
40 % 35 78 743
30 % 42 429 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 456
95 % 35 74 631 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 660
70 % 35 74 705
50 % 35 183 202
40 % 35 184 220
30 % 35 184 230
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 490
95 % 33 70 680 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 706
70 % 33 70 761
50 % 33 70 808
40 % 33 70 846
30 % 33 70 830
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 458
95 % 35 74 633 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 662
70 % 35 74 708
50 % 35 74 759
40 % 42 390 53
30 % 42 416 65
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 517
95 % 35 68 705 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 735
70 % 35 68 790
50 % 35 68 834
40 % 35 70 843
30 % 35 71 813
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 523
95 % 35 68 713 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 744
70 % 35 68 800
50 % 35 68 841
40 % 35 68 872
30 % 35 68 856
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65399
95 % 3 5 14722 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14449
70 % 3 5 13558
50 % 3 5 12046
40 % 3 5 10925
30 % 3 5 9486
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71910
95 % 1 1 49897
90 % 1 1 47342
70 % 3 21 3002
50 % 7 30 2001
40 % 7 134 294
30 % 26 157 268
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 524
95 % 35 68 714 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 745
70 % 35 68 801
50 % 35 69 821
40 % 35 69 856
30 % 35 69 843
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 73368
95 % 35 68 715 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 746
70 % 35 68 802
50 % 35 177 208
40 % 35 177 229
30 % 35 177 238
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 522
95 % 35 68 712 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 743
70 % 35 68 799
50 % 35 68 840
40 % 35 68 871
30 % 35 173 246
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 516
95 % 35 68 703 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 732
70 % 35 68 787
50 % 35 68 832
40 % 35 178 225
30 % 43 537 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2296
95 % 35 68 701 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 730
70 % 35 68 784
50 % 35 175 211
40 % 35 177 228
30 % 35 177 237
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54869
95 % 35 74 618 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 649
70 % 35 74 692
50 % 35 74 746
40 % 35 184 218
30 % 35 184 227
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10402
95 % 35 74 621 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 652
70 % 35 74 694
50 % 35 74 748
40 % 35 76 760
30 % 36 78 739
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 451
95 % 35 74 627 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 656
70 % 35 74 698
50 % 35 74 752
40 % 36 184 219
30 % 36 184 229
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2325
95 % 3 21 2973 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 739
70 % 35 68 795
50 % 50 105 360
40 % 57 126 286
30 % 57 128 289
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64244
95 % 1 1 44515
90 % 1 7 10497
70 % 3 27 2234
50 % 35 74 753
40 % 35 79 729
30 % 35 79 727
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 454
95 % 35 74 629
90 % 35 74 658
70 % 35 74 703
50 % 35 74 758
40 % 36 77 752
30 % 36 78 744

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 12 J 50S ribosomal protein L13P 2238
2 1VQO 12 J 50S ribosomal protein L13P 2238
3 1VQ8 12 J 50S ribosomal protein L13P 2238
4 1S72 12 J 50S ribosomal protein L13P 2238
5 1JJ2 11 I RIBOSOMAL PROTEIN L13 2238
6 1YHQ 12 J 50S ribosomal protein L13P 2238
7 1VQP 12 J 50S ribosomal protein L13P 2238
8 1VQM 12 J 50S ribosomal protein L13P 2238
9 3CC2 10 J 50S ribosomal protein L13P 2238
10 1VQL 12 J 50S ribosomal protein L13P 2238
11 1VQK 12 J 50S ribosomal protein L13P 2238
12 1VQN 13 J 50S ribosomal protein L13P 2238
13 1YIJ 12 J 50S ribosomal protein L13P 2238
14 1YI2 12 J 50S ribosomal protein L13P 2238
15 1VQ9 12 J 50S ribosomal protein L13P 2238
16 1VQ7 12 J 50S ribosomal protein L13P 2238
17 3CCM 10 J 50S ribosomal protein L13P 2238
18 1VQ5 12 J 50S ribosomal protein L13P 2238
19 3CC7 10 J 50S ribosomal protein L13P 2238
20 1YIT 16 J 50S RIBOSOMAL PROTEIN L13P 2238
21 3CCE 10 J 50S ribosomal protein L13P 2238
22 3G6E 11 J 50S ribosomal protein L13P 2238
23 3CPW 11 I 50S ribosomal protein L13P 2238
24 3CCU 10 J 50S ribosomal protein L13P 2238
25 1VQ6 13 J 50S ribosomal protein L13P 2238
26 1M90 12 K RIBOSOMAL PROTEIN L13 2238
27 3CCL 10 J 50S ribosomal protein L13P 2238
28 1YJW 16 J 50S RIBOSOMAL PROTEIN L13P 2238
29 1YJ9 12 J 50S ribosomal protein L13P 2238
30 3CD6 10 J 50S ribosomal protein L13P 2238
31 3CCV 10 J 50S ribosomal protein L13P 2238
32 3CC4 10 J 50S ribosomal protein L13P 2238
33 2OTL 11 J 50S ribosomal protein L13P 2238
34 3G71 11 J 50S ribosomal protein L13P 2238
35 1FFK 9 G RIBOSOMAL PROTEIN L13 2238
36 1VQ4 12 J 50S ribosomal protein L13P 2238
37 1YJN 12 J 50S ribosomal protein L13P 2238
38 3CMA 10 J 50S ribosomal protein L13P 2238
39 3CCS 10 J 50S ribosomal protein L13P 2238
40 3CCQ 10 J 50S ribosomal protein L13P 2238
41 3I56 10 J 50S ribosomal protein L13P 2238
42 3CCR 10 J 50S ribosomal protein L13P 2238
43 2OTJ 11 J 50S ribosomal protein L13P 2238
44 1KQS 13 I RIBOSOMAL PROTEIN L13 2238
45 3OW2 11 I 50S ribosomal protein L13P 2238
46 3CXC 12 I RIBOSOMAL PROTEIN L13 2238
47 1QVG 12 I 50S ribosomal protein L13P 2238
48 3CME 10 J 50S ribosomal protein L13P 2238
49 2QEX 11 J 50S ribosomal protein L13P 2238
50 1KC8 11 K RIBOSOMAL PROTEIN L13 2238
51 1N8R 11 K 50S ribosomal protein L13P 2238
52 1Q81 12 K 50S ribosomal protein L13P 2238
53 1Q82 12 K 50S ribosomal protein L13P 2238
54 1QVF 12 I 50S ribosomal protein L13P 2238
55 1NJI 11 K 50S ribosomal protein L13P 2238
56 1K73 11 K RIBOSOMAL PROTEIN L13 2238
57 1K9M 11 K RIBOSOMAL PROTEIN L13 2238
58 1KD1 11 K RIBOSOMAL PROTEIN L13 2238
59 3I55 11 J 50S ribosomal protein L13P 2238
60 1K8A 11 K RIBOSOMAL PROTEIN L13 2238
61 1Q86 12 K 50S ribosomal protein L13P 2238
62 1M1K 11 K RIBOSOMAL PROTEIN L13 2238
63 3G4S 11 J 50S ribosomal protein L13P 2238
64 3CCJ 10 J 50S ribosomal protein L13P 2238
65 1W2B 14 I 50S RIBOSOMAL PROTEIN L13P 2238
66 2QA4 12 J 50S ribosomal protein L13P 2238
67 1Q7Y 12 K 50S ribosomal protein L13P 2238
68 4V4P 12 AM 50S ribosomal protein L13 274
69 4V4R 34 BN 50S ribosomal protein L13 274
70 4V4S 34 BN 50S ribosomal protein L13 274
71 4V4T 33 BN 50S ribosomal protein L13 274
72 4ADX 20 J RPL13 145262
73 1ML5 34 m 50S RIBOSOMAL PROTEIN L13 562
74 4V42 36 BM 50S RIBOSOMAL PROTEIN L13 274