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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 523 Members. Sequence cutoff: 40% Cluster size: 77 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1J3A 1 A 50S ribosomal protein L13P 53953  
2 4V9F 12 J 50S ribosomal protein L13P 272569  
3 1VQO 12 J 50S ribosomal protein L13P 2238  
4 1VQ8 12 J 50S ribosomal protein L13P 2238  
5 1S72 12 J 50S ribosomal protein L13P 2238  
6 1JJ2 11 I RIBOSOMAL PROTEIN L13 2238  
7 1YHQ 12 J 50S ribosomal protein L13P 2238  
8 1VQP 12 J 50S ribosomal protein L13P 2238  
9 1VQM 12 J 50S ribosomal protein L13P 2238  
10 3CC2 10 J 50S ribosomal protein L13P 2238  
11 1VQL 12 J 50S ribosomal protein L13P 2238  
12 1VQK 12 J 50S ribosomal protein L13P 2238  
13 1VQN 13 J 50S ribosomal protein L13P 2238  
14 1YIJ 12 J 50S ribosomal protein L13P 2238  
15 1YI2 12 J 50S ribosomal protein L13P 2238  
16 1VQ9 12 J 50S ribosomal protein L13P 2238  
17 1VQ7 12 J 50S ribosomal protein L13P 2238  
18 3CCM 10 J 50S ribosomal protein L13P 272569  
19 1VQ5 12 J 50S ribosomal protein L13P 2238  
20 3CCJ 10 J 50S ribosomal protein L13P 272569  
21 3CC7 10 J 50S ribosomal protein L13P 2238  
22 1YIT 16 J 50S RIBOSOMAL PROTEIN L13P 2238  
23 3CCE 10 J 50S ribosomal protein L13P 272569  
24 3G6E 11 J 50S ribosomal protein L13P 2238  
25 3CPW 11 I 50S ribosomal protein L13P 2238  
26 3CCU 10 J 50S ribosomal protein L13P 272569  
27 1VQ6 13 J 50S ribosomal protein L13P 2238  
28 1M90 12 K RIBOSOMAL PROTEIN L13 2238  
29 3CCL 10 J 50S ribosomal protein L13P 272569  
30 1YJW 16 J 50S RIBOSOMAL PROTEIN L13P 2238  
31 1YJ9 12 J 50S ribosomal protein L13P 2238  
32 3CD6 10 J 50S ribosomal protein L13P 272569  
33 3CCV 10 J 50S ribosomal protein L13P 272569  
34 3CC4 10 J 50S ribosomal protein L13P 272569  
35 2OTL 11 J 50S ribosomal protein L13P 2238  
36 3G71 11 J 50S ribosomal protein L13P 2238  
37 1FFK 9 G RIBOSOMAL PROTEIN L13 2238  
38 1VQ4 12 J 50S ribosomal protein L13P 2238  
39 1YJN 12 J 50S ribosomal protein L13P 2238  
40 3CMA 10 J 50S ribosomal protein L13P 2238  
41 3CCS 10 J 50S ribosomal protein L13P 272569  
42 3CCQ 10 J 50S ribosomal protein L13P 272569  
43 3I56 10 J 50S ribosomal protein L13P 2238  
44 3CCR 10 J 50S ribosomal protein L13P 272569  
45 2OTJ 11 J 50S ribosomal protein L13P 2238  
46 1KQS 13 I RIBOSOMAL PROTEIN L13 2238  
47 3OW2 11 I 50S ribosomal protein L13P 2238  
48 3CXC 12 I RIBOSOMAL PROTEIN L13 2238  
49 1QVG 12 I 50S ribosomal protein L13P 2238  
50 3CME 10 J 50S ribosomal protein L13P 2238  
51 2QEX 11 J 50S ribosomal protein L13P 2238  
52 1KC8 11 K RIBOSOMAL PROTEIN L13 2238  
53 1N8R 11 K 50S ribosomal protein L13P 2238  
54 1Q81 12 K 50S ribosomal protein L13P 2238  
55 1Q82 12 K 50S ribosomal protein L13P 2238  
56 1QVF 12 I 50S ribosomal protein L13P 2238  
57 1NJI 11 K 50S ribosomal protein L13P 2238  
58 1K73 11 K RIBOSOMAL PROTEIN L13 2238  
59 1K9M 11 K RIBOSOMAL PROTEIN L13 2238  
60 1KD1 11 K RIBOSOMAL PROTEIN L13 2238  
61 3I55 11 J 50S ribosomal protein L13P 2238  
62 1K8A 11 K RIBOSOMAL PROTEIN L13 2238  
63 1Q86 12 K 50S ribosomal protein L13P 2238  
64 1M1K 11 K RIBOSOMAL PROTEIN L13 2238  
65 3G4S 11 J 50S ribosomal protein L13P 2238  
66 1W2B 14 I 50S RIBOSOMAL PROTEIN L13P 2238  
67 2QA4 12 J 50S ribosomal protein L13P 2238  
68 1Q7Y 12 K 50S ribosomal protein L13P 2238  
69 4V4P 12 AM 50S ribosomal protein L13 300852  
70 4V4R 34 BN 50S ribosomal protein L13 274  
71 4V4S 34 BN 50S ribosomal protein L13 274  
72 4V4T 33 BN 50S ribosomal protein L13 274  
73 4V4N 54 AI 50S ribosomal protein L13P SEE REMARK 999 2190  
74 4V6U 47 BI 50S ribosomal protein L13P 186497  
75 4ADX 20 J RPL13 187420  
76 1ML5 34 m 50S RIBOSOMAL PROTEIN L13 562  
77 4V42 36 BM 50S RIBOSOMAL PROTEIN L13 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 661
95% 36 68 472
90% 36 68 494
70% 36 68 534
50% 36 121 237
40% 36 121 263
30% 41 334 48
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49266
95% 1 1 34547
90% 1 1 33021
70% 36 68 526
50% 36 119 242
40% 36 119 270
30% 36 119 287
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 415
90% 36 74 439
70% 36 74 468
50% 36 74 515
40% 36 74 556
30% 40 326 52
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 413
90% 36 74 437
70% 36 74 466
50% 36 76 494
40% 36 76 532
30% 36 78 517
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 474
90% 36 68 497
70% 36 68 537
50% 36 70 573
40% 36 70 606
30% 36 70 607
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1711
95% 36 68 470
90% 36 68 492
70% 36 68 532
50% 36 68 607
40% 36 70 604
30% 36 71 587
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 476
90% 36 68 499
70% 36 68 539
50% 36 70 577
40% 36 70 611
30% 36 71 590
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 335
95% 36 68 468
90% 36 68 490
70% 36 68 530
50% 36 68 604
40% 36 68 638
30% 36 122 278
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 418
90% 36 74 442
70% 36 74 472
50% 36 76 495
40% 36 78 514
30% 40 285 71
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 417
90% 36 74 441
70% 36 74 471
50% 36 128 220
40% 36 128 247
30% 36 128 261
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 313
95% 34 70 452
90% 34 70 473
70% 34 70 509
50% 34 70 578
40% 34 70 612
30% 34 70 610
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 419
90% 36 74 443
70% 36 74 473
50% 36 74 519
40% 36 74 558
30% 36 74 554
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 469
90% 36 68 491
70% 36 68 531
50% 36 68 605
40% 36 70 603
30% 36 71 586
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 478
90% 36 68 501
70% 36 68 541
50% 36 68 611
40% 36 68 643
30% 36 68 637
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52248
95% 3 5 11516
90% 3 5 11330
70% 3 5 10718
50% 3 5 9629
40% 3 5 8789
30% 3 5 7691
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57922
95% 1 1 40373
90% 1 1 38587
70% 3 21 2305
50% 7 30 1572
40% 7 77 413
30% 26 100 333
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 480
90% 36 68 503
70% 36 68 543
50% 36 69 595
40% 36 69 628
30% 36 69 625
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59211
95% 36 68 481
90% 36 68 504
70% 36 68 544
50% 36 121 238
40% 36 121 264
30% 36 121 281
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 477
90% 36 68 500
70% 36 68 540
50% 36 68 610
40% 36 68 642
30% 36 120 286
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 467
90% 36 68 489
70% 36 68 529
50% 36 68 603
40% 36 120 267
30% 41 329 51
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1694
95% 36 68 464
90% 36 68 487
70% 36 68 525
50% 36 119 241
40% 36 121 262
30% 36 121 279
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43475
95% 36 74 407
90% 36 74 431
70% 36 74 462
50% 36 74 509
40% 36 125 252
30% 36 125 270
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7974
95% 36 74 411
90% 36 74 435
70% 36 74 465
50% 36 74 511
40% 36 76 530
30% 36 77 524
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 414
90% 36 74 438
70% 36 74 467
50% 36 74 513
40% 36 126 251
30% 36 126 268
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1722
95% 3 21 2254
90% 36 68 496
70% 36 68 536
50% 51 95 309
40% 58 105 292
30% 58 107 308
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51264
95% 1 1 35664
90% 1 7 8187
70% 3 27 1696
50% 36 74 514
40% 36 79 502
30% 36 79 510
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 416
90% 36 74 440
70% 36 74 469
50% 36 74 518
40% 37 77 523
30% 37 78 519
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.