Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 742
95 % 36 68 527
90 % 36 68 555
70 % 36 68 609
50 % 36 141 223
40 % 36 141 254
30 % 44 428 34
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54386
95 % 1 1 37981
90 % 1 1 36183
70 % 36 68 603
50 % 36 136 236
40 % 36 136 263
30 % 36 136 275
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 462
90 % 36 74 489
70 % 36 74 534
50 % 36 74 621
40 % 36 74 664
30 % 43 417 41
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 460
90 % 36 74 487
70 % 36 74 531
50 % 36 76 590
40 % 36 76 640
30 % 36 78 615
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 529
90 % 36 68 558
70 % 36 68 611
50 % 36 70 673
40 % 36 70 715
30 % 36 70 717
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1928
95 % 36 68 526
90 % 36 68 554
70 % 36 68 608
50 % 36 68 702
40 % 36 70 712
30 % 36 71 699
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 356
95 % 36 68 530
90 % 36 68 559
70 % 36 68 612
50 % 36 70 675
40 % 36 70 717
30 % 36 71 702
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 365
95 % 36 68 524
90 % 36 68 552
70 % 36 68 606
50 % 36 68 699
40 % 36 68 733
30 % 36 140 266
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 316
95 % 36 74 468
90 % 36 74 496
70 % 36 74 541
50 % 36 76 592
40 % 36 78 613
30 % 43 359 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 314
95 % 36 74 466
90 % 36 74 494
70 % 36 74 539
50 % 36 145 214
40 % 36 145 245
30 % 36 145 256
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 341
95 % 34 70 507
90 % 34 70 532
70 % 34 70 583
50 % 34 70 676
40 % 34 70 718
30 % 34 70 719
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 317
95 % 36 74 469
90 % 36 74 497
70 % 36 74 542
50 % 36 74 627
40 % 36 74 670
30 % 36 74 664
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 352
95 % 36 68 525
90 % 36 68 553
70 % 36 68 607
50 % 36 68 700
40 % 36 70 711
30 % 36 71 698
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 358
95 % 36 68 532
90 % 36 68 561
70 % 36 68 614
50 % 36 68 704
40 % 36 68 736
30 % 36 68 736
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57530
95 % 3 5 12801
90 % 3 5 12559
70 % 3 5 11819
50 % 3 5 10592
40 % 3 5 9666
30 % 3 5 8412
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63523
95 % 1 1 44095
90 % 1 1 42013
70 % 3 21 2574
50 % 7 30 1732
40 % 7 94 377
30 % 26 117 327
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 360
95 % 36 68 534
90 % 36 68 563
70 % 36 68 616
50 % 36 69 690
40 % 36 69 728
30 % 36 69 731
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64867
95 % 36 68 536
90 % 36 68 564
70 % 36 68 617
50 % 36 138 228
40 % 36 138 261
30 % 36 138 272
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 357
95 % 36 68 531
90 % 36 68 560
70 % 36 68 613
50 % 36 68 703
40 % 36 68 735
30 % 36 136 276
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 351
95 % 36 68 523
90 % 36 68 551
70 % 36 68 605
50 % 36 68 698
40 % 36 140 256
30 % 44 423 38
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1904
95 % 36 68 521
90 % 36 68 549
70 % 36 68 602
50 % 36 136 235
40 % 36 138 259
30 % 36 138 271
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48090
95 % 36 74 452
90 % 36 74 480
70 % 36 74 526
50 % 36 74 614
40 % 36 145 242
30 % 36 145 252
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8939
95 % 36 74 455
90 % 36 74 483
70 % 36 74 529
50 % 36 74 616
40 % 36 76 639
30 % 36 77 624
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 461
90 % 36 74 488
70 % 36 74 532
50 % 36 74 619
40 % 37 145 244
30 % 37 145 255
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1939
95 % 3 21 2519
90 % 36 68 557
70 % 36 68 610
50 % 51 96 345
40 % 58 110 307
30 % 58 112 322
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56508
95 % 1 1 39163
90 % 1 7 9098
70 % 3 27 1891
50 % 36 74 620
40 % 36 79 601
30 % 36 79 605
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 312
95 % 36 74 463
90 % 36 74 491
70 % 36 74 536
50 % 36 74 624
40 % 37 77 624
30 % 37 78 618

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1J3A 1 A 50S ribosomal protein L13P 53953
2 4V9F 12 J 50S ribosomal protein L13P 2238
3 1VQO 12 J 50S ribosomal protein L13P 2238
4 1VQ8 12 J 50S ribosomal protein L13P 2238
5 1S72 12 J 50S ribosomal protein L13P 2238
6 1JJ2 11 I RIBOSOMAL PROTEIN L13 2238
7 1YHQ 12 J 50S ribosomal protein L13P 2238
8 1VQP 12 J 50S ribosomal protein L13P 2238
9 1VQM 12 J 50S ribosomal protein L13P 2238
10 3CC2 10 J 50S ribosomal protein L13P 2238
11 1VQL 12 J 50S ribosomal protein L13P 2238
12 1VQK 12 J 50S ribosomal protein L13P 2238
13 1VQN 13 J 50S ribosomal protein L13P 2238
14 1YIJ 12 J 50S ribosomal protein L13P 2238
15 1YI2 12 J 50S ribosomal protein L13P 2238
16 1VQ9 12 J 50S ribosomal protein L13P 2238
17 1VQ7 12 J 50S ribosomal protein L13P 2238
18 3CCM 10 J 50S ribosomal protein L13P 2238
19 1VQ5 12 J 50S ribosomal protein L13P 2238
20 3CCJ 10 J 50S ribosomal protein L13P 2238
21 3CC7 10 J 50S ribosomal protein L13P 2238
22 1YIT 16 J 50S RIBOSOMAL PROTEIN L13P 2238
23 3CCE 10 J 50S ribosomal protein L13P 2238
24 3G6E 11 J 50S ribosomal protein L13P 2238
25 3CPW 11 I 50S ribosomal protein L13P 2238
26 3CCU 10 J 50S ribosomal protein L13P 2238
27 1VQ6 13 J 50S ribosomal protein L13P 2238
28 1M90 12 K RIBOSOMAL PROTEIN L13 2238
29 3CCL 10 J 50S ribosomal protein L13P 2238
30 1YJW 16 J 50S RIBOSOMAL PROTEIN L13P 2238
31 1YJ9 12 J 50S ribosomal protein L13P 2238
32 3CD6 10 J 50S ribosomal protein L13P 2238
33 3CCV 10 J 50S ribosomal protein L13P 2238
34 3CC4 10 J 50S ribosomal protein L13P 2238
35 2OTL 11 J 50S ribosomal protein L13P 2238
36 3G71 11 J 50S ribosomal protein L13P 2238
37 1FFK 9 G RIBOSOMAL PROTEIN L13 2238
38 1VQ4 12 J 50S ribosomal protein L13P 2238
39 1YJN 12 J 50S ribosomal protein L13P 2238
40 3CMA 10 J 50S ribosomal protein L13P 2238
41 3CCS 10 J 50S ribosomal protein L13P 2238
42 3CCQ 10 J 50S ribosomal protein L13P 2238
43 3I56 10 J 50S ribosomal protein L13P 2238
44 3CCR 10 J 50S ribosomal protein L13P 2238
45 2OTJ 11 J 50S ribosomal protein L13P 2238
46 1KQS 13 I RIBOSOMAL PROTEIN L13 2238
47 3OW2 11 I 50S ribosomal protein L13P 2238
48 3CXC 12 I RIBOSOMAL PROTEIN L13 2238
49 1QVG 12 I 50S ribosomal protein L13P 2238
50 3CME 10 J 50S ribosomal protein L13P 2238
51 2QEX 11 J 50S ribosomal protein L13P 2238
52 1KC8 11 K RIBOSOMAL PROTEIN L13 2238
53 1N8R 11 K 50S ribosomal protein L13P 2238
54 1Q81 12 K 50S ribosomal protein L13P 2238
55 1Q82 12 K 50S ribosomal protein L13P 2238
56 1QVF 12 I 50S ribosomal protein L13P 2238
57 1NJI 11 K 50S ribosomal protein L13P 2238
58 1K73 11 K RIBOSOMAL PROTEIN L13 2238
59 1K9M 11 K RIBOSOMAL PROTEIN L13 2238
60 1KD1 11 K RIBOSOMAL PROTEIN L13 2238
61 3I55 11 J 50S ribosomal protein L13P 2238
62 1K8A 11 K RIBOSOMAL PROTEIN L13 2238
63 1Q86 12 K 50S ribosomal protein L13P 2238
64 1M1K 11 K RIBOSOMAL PROTEIN L13 2238
65 3G4S 11 J 50S ribosomal protein L13P 2238
66 1W2B 14 I 50S RIBOSOMAL PROTEIN L13P 2238
67 2QA4 12 J 50S ribosomal protein L13P 2238
68 1Q7Y 12 K 50S ribosomal protein L13P 2238
69 4V4P 12 AM 50S ribosomal protein L13 274
70 4V4R 34 BN 50S ribosomal protein L13 274
71 4V4S 34 BN 50S ribosomal protein L13 274
72 4V4T 33 BN 50S ribosomal protein L13 274
73 4V4N 54 AI 50S ribosomal protein L13P SEE REMARK 999 2190
74 4V6U 47 BI 50S ribosomal protein L13P 2261
75 4ADX 20 J RPL13 145262
76 1ML5 34 m 50S RIBOSOMAL PROTEIN L13 562
77 4V42 36 BM 50S RIBOSOMAL PROTEIN L13 274