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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 531 Members. Sequence cutoff: 40% Cluster size: 77 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1J3A 1 A 50S ribosomal protein L13P 53953  
2 4V9F 12 J 50S ribosomal protein L13P 272569  
3 1VQO 12 J 50S ribosomal protein L13P 2238  
4 1VQ8 12 J 50S ribosomal protein L13P 2238  
5 1S72 12 J 50S ribosomal protein L13P 2238  
6 1JJ2 11 I RIBOSOMAL PROTEIN L13 2238  
7 1YHQ 12 J 50S ribosomal protein L13P 2238  
8 1VQP 12 J 50S ribosomal protein L13P 2238  
9 1VQM 12 J 50S ribosomal protein L13P 2238  
10 3CC2 10 J 50S ribosomal protein L13P 2238  
11 1VQL 12 J 50S ribosomal protein L13P 2238  
12 1VQK 12 J 50S ribosomal protein L13P 2238  
13 1VQN 13 J 50S ribosomal protein L13P 2238  
14 1YIJ 12 J 50S ribosomal protein L13P 2238  
15 1YI2 12 J 50S ribosomal protein L13P 2238  
16 1VQ9 12 J 50S ribosomal protein L13P 2238  
17 1VQ7 12 J 50S ribosomal protein L13P 2238  
18 3CCM 10 J 50S ribosomal protein L13P 2238  
19 1VQ5 12 J 50S ribosomal protein L13P 2238  
20 3CCJ 10 J 50S ribosomal protein L13P 2238  
21 3CC7 10 J 50S ribosomal protein L13P 2238  
22 1YIT 16 J 50S RIBOSOMAL PROTEIN L13P 2238  
23 3CCE 10 J 50S ribosomal protein L13P 2238  
24 3G6E 11 J 50S ribosomal protein L13P 2238  
25 3CPW 11 I 50S ribosomal protein L13P 2238  
26 3CCU 10 J 50S ribosomal protein L13P 2238  
27 1VQ6 13 J 50S ribosomal protein L13P 2238  
28 1M90 12 K RIBOSOMAL PROTEIN L13 2238  
29 3CCL 10 J 50S ribosomal protein L13P 2238  
30 1YJW 16 J 50S RIBOSOMAL PROTEIN L13P 2238  
31 1YJ9 12 J 50S ribosomal protein L13P 2238  
32 3CD6 10 J 50S ribosomal protein L13P 2238  
33 3CCV 10 J 50S ribosomal protein L13P 2238  
34 3CC4 10 J 50S ribosomal protein L13P 2238  
35 2OTL 11 J 50S ribosomal protein L13P 2238  
36 3G71 11 J 50S ribosomal protein L13P 2238  
37 1FFK 9 G RIBOSOMAL PROTEIN L13 2238  
38 1VQ4 12 J 50S ribosomal protein L13P 2238  
39 1YJN 12 J 50S ribosomal protein L13P 2238  
40 3CMA 10 J 50S ribosomal protein L13P 2238  
41 3CCS 10 J 50S ribosomal protein L13P 2238  
42 3CCQ 10 J 50S ribosomal protein L13P 2238  
43 3I56 10 J 50S ribosomal protein L13P 2238  
44 3CCR 10 J 50S ribosomal protein L13P 2238  
45 2OTJ 11 J 50S ribosomal protein L13P 2238  
46 1KQS 13 I RIBOSOMAL PROTEIN L13 2238  
47 3OW2 11 I 50S ribosomal protein L13P 2238  
48 3CXC 12 I RIBOSOMAL PROTEIN L13 2238  
49 1QVG 12 I 50S ribosomal protein L13P 2238  
50 3CME 10 J 50S ribosomal protein L13P 2238  
51 2QEX 11 J 50S ribosomal protein L13P 2238  
52 1KC8 11 K RIBOSOMAL PROTEIN L13 2238  
53 1N8R 11 K 50S ribosomal protein L13P 2238  
54 1Q81 12 K 50S ribosomal protein L13P 2238  
55 1Q82 12 K 50S ribosomal protein L13P 2238  
56 1QVF 12 I 50S ribosomal protein L13P 2238  
57 1NJI 11 K 50S ribosomal protein L13P 2238  
58 1K73 11 K RIBOSOMAL PROTEIN L13 2238  
59 1K9M 11 K RIBOSOMAL PROTEIN L13 2238  
60 1KD1 11 K RIBOSOMAL PROTEIN L13 2238  
61 3I55 11 J 50S ribosomal protein L13P 2238  
62 1K8A 11 K RIBOSOMAL PROTEIN L13 2238  
63 1Q86 12 K 50S ribosomal protein L13P 2238  
64 1M1K 11 K RIBOSOMAL PROTEIN L13 2238  
65 3G4S 11 J 50S ribosomal protein L13P 2238  
66 1W2B 14 I 50S RIBOSOMAL PROTEIN L13P 2238  
67 2QA4 12 J 50S ribosomal protein L13P 2238  
68 1Q7Y 12 K 50S ribosomal protein L13P 2238  
69 4V4P 12 AM 50S ribosomal protein L13 300852  
70 4V4R 34 BN 50S ribosomal protein L13 274  
71 4V4S 34 BN 50S ribosomal protein L13 274  
72 4V4T 33 BN 50S ribosomal protein L13 274  
73 4V4N 54 AI 50S ribosomal protein L13P SEE REMARK 999 2190  
74 4V6U 47 BI 50S ribosomal protein L13P 186497  
75 4ADX 20 J RPL13 187420  
76 1ML5 34 m 50S RIBOSOMAL PROTEIN L13 562  
77 4V42 36 BM 50S RIBOSOMAL PROTEIN L13 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 670
95% 36 68 475
90% 36 68 498
70% 36 68 538
50% 36 122 239
40% 36 122 263
30% 41 343 47
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49590
95% 1 1 34765
90% 1 1 33215
70% 36 68 531
50% 36 120 245
40% 36 120 269
30% 36 120 287
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 417
90% 36 74 442
70% 36 74 473
50% 36 74 523
40% 36 74 565
30% 40 335 51
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 415
90% 36 74 440
70% 36 74 470
50% 36 76 499
40% 36 76 540
30% 36 78 524
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 477
90% 36 68 501
70% 36 68 541
50% 36 70 581
40% 36 70 617
30% 36 70 618
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1720
95% 36 68 473
90% 36 68 496
70% 36 68 536
50% 36 68 616
40% 36 70 616
30% 36 71 595
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 479
90% 36 68 503
70% 36 68 543
50% 36 70 584
40% 36 70 621
30% 36 71 598
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 339
95% 36 68 471
90% 36 68 494
70% 36 68 534
50% 36 68 613
40% 36 68 648
30% 36 123 280
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 420
90% 36 74 445
70% 36 74 477
50% 36 76 500
40% 36 78 521
30% 40 293 68
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 419
90% 36 74 444
70% 36 74 476
50% 36 129 222
40% 36 129 248
30% 36 129 264
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 315
95% 34 70 456
90% 34 70 477
70% 34 70 513
50% 34 70 585
40% 34 70 622
30% 34 70 620
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 295
95% 36 74 421
90% 36 74 446
70% 36 74 478
50% 36 74 526
40% 36 74 567
30% 36 74 561
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 472
90% 36 68 495
70% 36 68 535
50% 36 68 614
40% 36 70 615
30% 36 71 594
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 481
90% 36 68 505
70% 36 68 545
50% 36 68 620
40% 36 68 653
30% 36 68 648
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52588
95% 3 5 11595
90% 3 5 11406
70% 3 5 10789
50% 3 5 9686
40% 3 5 8843
30% 3 5 7734
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58302
95% 1 1 40634
90% 1 1 38822
70% 3 21 2323
50% 7 30 1581
40% 7 78 410
30% 26 101 335
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 334
95% 36 68 483
90% 36 68 507
70% 36 68 547
50% 36 69 603
40% 36 69 640
30% 36 69 635
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59601
95% 36 68 484
90% 36 68 508
70% 36 68 549
50% 36 122 240
40% 36 122 264
30% 36 122 282
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 480
90% 36 68 504
70% 36 68 544
50% 36 68 619
40% 36 68 652
30% 36 121 284
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 470
90% 36 68 493
70% 36 68 533
50% 36 68 611
40% 36 121 267
30% 41 338 50
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1703
95% 36 68 468
90% 36 68 491
70% 36 68 530
50% 36 120 244
40% 36 122 262
30% 36 122 281
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43763
95% 36 74 409
90% 36 74 434
70% 36 74 466
50% 36 74 516
40% 36 126 254
30% 36 126 270
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8042
95% 36 74 413
90% 36 74 438
70% 36 74 469
50% 36 74 518
40% 36 76 537
30% 36 77 531
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 416
90% 36 74 441
70% 36 74 471
50% 36 74 521
40% 36 127 253
30% 36 127 269
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1731
95% 3 21 2270
90% 36 68 500
70% 36 68 540
50% 51 95 311
40% 58 105 292
30% 58 107 308
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51602
95% 1 1 35892
90% 1 7 8253
70% 3 27 1707
50% 36 74 522
40% 36 79 508
30% 36 79 516
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 418
90% 36 74 443
70% 36 74 474
50% 36 74 525
40% 37 77 531
30% 37 78 526
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.