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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 517 Members. Sequence cutoff: 40% Cluster size: 77 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1J3A 1 A 50S ribosomal protein L13P 53953  
2 4V9F 12 J 50S ribosomal protein L13P 272569  
3 1VQO 12 J 50S ribosomal protein L13P 2238  
4 1VQ8 12 J 50S ribosomal protein L13P 2238  
5 1S72 12 J 50S ribosomal protein L13P 2238  
6 1JJ2 11 I RIBOSOMAL PROTEIN L13 2238  
7 1YHQ 12 J 50S ribosomal protein L13P 2238  
8 1VQP 12 J 50S ribosomal protein L13P 2238  
9 1VQM 12 J 50S ribosomal protein L13P 2238  
10 3CC2 10 J 50S ribosomal protein L13P 2238  
11 1VQL 12 J 50S ribosomal protein L13P 2238  
12 1VQK 12 J 50S ribosomal protein L13P 2238  
13 1VQN 13 J 50S ribosomal protein L13P 2238  
14 1YIJ 12 J 50S ribosomal protein L13P 2238  
15 1YI2 12 J 50S ribosomal protein L13P 2238  
16 1VQ9 12 J 50S ribosomal protein L13P 2238  
17 1VQ7 12 J 50S ribosomal protein L13P 2238  
18 3CCM 10 J 50S ribosomal protein L13P 272569  
19 1VQ5 12 J 50S ribosomal protein L13P 2238  
20 3CCJ 10 J 50S ribosomal protein L13P 272569  
21 3CC7 10 J 50S ribosomal protein L13P 2238  
22 1YIT 16 J 50S RIBOSOMAL PROTEIN L13P 2238  
23 3CCE 10 J 50S ribosomal protein L13P 272569  
24 3G6E 11 J 50S ribosomal protein L13P 2238  
25 3CPW 11 I 50S ribosomal protein L13P 272569  
26 3CCU 10 J 50S ribosomal protein L13P 272569  
27 1VQ6 13 J 50S ribosomal protein L13P 2238  
28 1M90 12 K RIBOSOMAL PROTEIN L13 2238  
29 3CCL 10 J 50S ribosomal protein L13P 272569  
30 1YJW 16 J 50S RIBOSOMAL PROTEIN L13P 2238  
31 1YJ9 12 J 50S ribosomal protein L13P 2238  
32 3CD6 10 J 50S ribosomal protein L13P 272569  
33 3CCV 10 J 50S ribosomal protein L13P 272569  
34 3CC4 10 J 50S ribosomal protein L13P 272569  
35 2OTL 11 J 50S ribosomal protein L13P 2238  
36 3G71 11 J 50S ribosomal protein L13P 2238  
37 1FFK 9 G RIBOSOMAL PROTEIN L13 2238  
38 1VQ4 12 J 50S ribosomal protein L13P 2238  
39 1YJN 12 J 50S ribosomal protein L13P 2238  
40 3CMA 10 J 50S ribosomal protein L13P 2238  
41 3CCS 10 J 50S ribosomal protein L13P 272569  
42 3CCQ 10 J 50S ribosomal protein L13P 272569  
43 3I56 10 J 50S ribosomal protein L13P 2238  
44 3CCR 10 J 50S ribosomal protein L13P 272569  
45 2OTJ 11 J 50S ribosomal protein L13P 2238  
46 1KQS 13 I RIBOSOMAL PROTEIN L13 2238  
47 3OW2 11 I 50S ribosomal protein L13P 2238  
48 3CXC 12 I RIBOSOMAL PROTEIN L13 2238  
49 1QVG 12 I 50S ribosomal protein L13P 2238  
50 3CME 10 J 50S ribosomal protein L13P 2238  
51 2QEX 11 J 50S ribosomal protein L13P 2238  
52 1KC8 11 K RIBOSOMAL PROTEIN L13 2238  
53 1N8R 11 K 50S ribosomal protein L13P 2238  
54 1Q81 12 K 50S ribosomal protein L13P 2238  
55 1Q82 12 K 50S ribosomal protein L13P 2238  
56 1QVF 12 I 50S ribosomal protein L13P 2238  
57 1NJI 11 K 50S ribosomal protein L13P 2238  
58 1K73 11 K RIBOSOMAL PROTEIN L13 2238  
59 1K9M 11 K RIBOSOMAL PROTEIN L13 2238  
60 1KD1 11 K RIBOSOMAL PROTEIN L13 2238  
61 3I55 11 J 50S ribosomal protein L13P 2238  
62 1K8A 11 K RIBOSOMAL PROTEIN L13 2238  
63 1Q86 12 K 50S ribosomal protein L13P 2238  
64 1M1K 11 K RIBOSOMAL PROTEIN L13 2238  
65 3G4S 11 J 50S ribosomal protein L13P 2238  
66 1W2B 14 I 50S RIBOSOMAL PROTEIN L13P 2238  
67 2QA4 12 J 50S ribosomal protein L13P 2238  
68 1Q7Y 12 K 50S ribosomal protein L13P 2238  
69 4V4P 12 AM 50S ribosomal protein L13 300852  
70 4V4R 34 BN 50S ribosomal protein L13 274  
71 4V4S 34 BN 50S ribosomal protein L13 274  
72 4V4T 33 BN 50S ribosomal protein L13 274  
73 4V4N 54 AI 50S ribosomal protein L13P SEE REMARK 999 2190  
74 4V6U 47 BI 50S ribosomal protein L13P 186497  
75 4ADX 20 J RPL13 187420  
76 1ML5 34 m 50S RIBOSOMAL PROTEIN L13 562  
77 4V42 36 BM 50S RIBOSOMAL PROTEIN L13 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 649
95% 36 68 467
90% 36 68 488
70% 36 68 525
50% 36 118 239
40% 36 118 265
30% 38 325 49
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48618
95% 1 1 34064
90% 1 1 32571
70% 36 68 518
50% 36 116 246
40% 36 116 273
30% 36 116 294
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 411
90% 36 74 434
70% 36 74 464
50% 36 74 509
40% 36 74 549
30% 37 317 53
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 285
95% 36 74 409
90% 36 74 432
70% 36 74 462
50% 36 76 489
40% 36 76 528
30% 36 78 513
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 469
90% 36 68 491
70% 36 68 528
50% 36 70 558
40% 36 70 592
30% 36 70 593
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1685
95% 36 68 465
90% 36 68 486
70% 36 68 523
50% 36 68 591
40% 36 70 590
30% 36 71 574
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 471
90% 36 68 493
70% 36 68 530
50% 36 70 561
40% 36 70 596
30% 36 71 576
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 334
95% 36 68 463
90% 36 68 484
70% 36 68 521
50% 36 68 588
40% 36 68 621
30% 36 119 283
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 414
90% 36 74 437
70% 36 74 467
50% 36 76 490
40% 36 78 507
30% 37 279 70
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 413
90% 36 74 436
70% 36 74 466
50% 36 125 225
40% 36 125 250
30% 36 125 265
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 311
95% 34 70 448
90% 34 70 468
70% 34 70 503
50% 34 70 562
40% 34 70 597
30% 34 70 595
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 415
90% 36 74 438
70% 36 74 468
50% 36 74 511
40% 36 74 551
30% 36 74 546
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 320
95% 36 68 464
90% 36 68 485
70% 36 68 522
50% 36 68 589
40% 36 70 589
30% 36 71 573
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 473
90% 36 68 495
70% 36 68 532
50% 36 68 596
40% 36 68 627
30% 36 68 619
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51587
95% 3 5 11415
90% 3 5 11228
70% 3 5 10606
50% 3 5 9527
40% 3 5 8694
30% 3 5 7615
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57230
95% 1 1 39876
90% 1 1 38130
70% 3 21 2272
50% 7 30 1549
40% 7 74 418
30% 26 97 336
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 329
95% 36 68 475
90% 36 68 497
70% 36 68 534
50% 36 69 577
40% 36 69 614
30% 36 69 610
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58512
95% 36 68 476
90% 36 68 498
70% 36 68 535
50% 36 118 240
40% 36 118 266
30% 36 118 286
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 472
90% 36 68 494
70% 36 68 531
50% 36 68 595
40% 36 68 626
30% 36 117 290
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 462
90% 36 68 483
70% 36 68 520
50% 36 68 587
40% 36 117 270
30% 38 320 51
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1667
95% 35 67 479
90% 35 67 501
70% 35 67 541
50% 35 115 249
40% 35 117 268
30% 35 117 287
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42865
95% 36 74 404
90% 36 74 427
70% 36 74 458
50% 36 74 502
40% 36 122 257
30% 36 122 274
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7876
95% 36 74 407
90% 36 74 430
70% 36 74 461
50% 36 74 504
40% 36 76 526
30% 36 77 519
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 410
90% 36 74 433
70% 36 74 463
50% 36 74 507
40% 36 122 260
30% 36 122 276
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1697
95% 3 21 2218
90% 36 68 490
70% 36 68 527
50% 51 95 303
40% 58 105 291
30% 58 107 307
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50604
95% 1 1 35177
90% 1 7 8099
70% 3 27 1670
50% 36 74 508
40% 36 78 504
30% 36 78 514
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 412
90% 36 74 435
70% 36 74 465
50% 36 74 510
40% 37 77 517
30% 37 78 515
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.