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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 507 Members. Sequence cutoff: 40% Cluster size: 77 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1J3A 1 A 50S ribosomal protein L13P 53953  
2 4V9F 12 J 50S ribosomal protein L13P 272569  
3 1VQO 12 J 50S ribosomal protein L13P 2238  
4 1VQ8 12 J 50S ribosomal protein L13P 2238  
5 1S72 12 J 50S ribosomal protein L13P 2238  
6 1JJ2 11 I RIBOSOMAL PROTEIN L13 2238  
7 1YHQ 12 J 50S ribosomal protein L13P 2238  
8 1VQP 12 J 50S ribosomal protein L13P 2238  
9 1VQM 12 J 50S ribosomal protein L13P 2238  
10 3CC2 10 J 50S ribosomal protein L13P 2238  
11 1VQL 12 J 50S ribosomal protein L13P 2238  
12 1VQK 12 J 50S ribosomal protein L13P 2238  
13 1VQN 13 J 50S ribosomal protein L13P 2238  
14 1YIJ 12 J 50S ribosomal protein L13P 2238  
15 1YI2 12 J 50S ribosomal protein L13P 2238  
16 1VQ9 12 J 50S ribosomal protein L13P 2238  
17 1VQ7 12 J 50S ribosomal protein L13P 2238  
18 3CCM 10 J 50S ribosomal protein L13P 272569  
19 1VQ5 12 J 50S ribosomal protein L13P 2238  
20 3CCJ 10 J 50S ribosomal protein L13P 272569  
21 3CC7 10 J 50S ribosomal protein L13P 2238  
22 1YIT 16 J 50S RIBOSOMAL PROTEIN L13P 2238  
23 3CCE 10 J 50S ribosomal protein L13P 272569  
24 3G6E 11 J 50S ribosomal protein L13P 2238  
25 3CPW 11 I 50S ribosomal protein L13P 272569  
26 3CCU 10 J 50S ribosomal protein L13P 272569  
27 1VQ6 13 J 50S ribosomal protein L13P 2238  
28 1M90 12 K RIBOSOMAL PROTEIN L13 2238  
29 3CCL 10 J 50S ribosomal protein L13P 272569  
30 1YJW 16 J 50S RIBOSOMAL PROTEIN L13P 2238  
31 1YJ9 12 J 50S ribosomal protein L13P 2238  
32 3CD6 10 J 50S ribosomal protein L13P 272569  
33 3CCV 10 J 50S ribosomal protein L13P 272569  
34 3CC4 10 J 50S ribosomal protein L13P 272569  
35 2OTL 11 J 50S ribosomal protein L13P 2238  
36 3G71 11 J 50S ribosomal protein L13P 2238  
37 1FFK 9 G RIBOSOMAL PROTEIN L13 2238  
38 1VQ4 12 J 50S ribosomal protein L13P 2238  
39 1YJN 12 J 50S ribosomal protein L13P 2238  
40 3CMA 10 J 50S ribosomal protein L13P 2238  
41 3CCS 10 J 50S ribosomal protein L13P 272569  
42 3CCQ 10 J 50S ribosomal protein L13P 272569  
43 3I56 10 J 50S ribosomal protein L13P 2238  
44 3CCR 10 J 50S ribosomal protein L13P 272569  
45 2OTJ 11 J 50S ribosomal protein L13P 2238  
46 1KQS 13 I RIBOSOMAL PROTEIN L13 2238  
47 3OW2 11 I 50S ribosomal protein L13P 2238  
48 3CXC 12 I RIBOSOMAL PROTEIN L13 2238  
49 1QVG 12 I 50S ribosomal protein L13P 2238  
50 3CME 10 J 50S ribosomal protein L13P 2238  
51 2QEX 11 J 50S ribosomal protein L13P 2238  
52 1KC8 11 K RIBOSOMAL PROTEIN L13 2238  
53 1N8R 11 K 50S ribosomal protein L13P 2238  
54 1Q81 12 K 50S ribosomal protein L13P 2238  
55 1Q82 12 K 50S ribosomal protein L13P 2238  
56 1QVF 12 I 50S ribosomal protein L13P 2238  
57 1NJI 11 K 50S ribosomal protein L13P 2238  
58 1K73 11 K RIBOSOMAL PROTEIN L13 2238  
59 1K9M 11 K RIBOSOMAL PROTEIN L13 2238  
60 1KD1 11 K RIBOSOMAL PROTEIN L13 2238  
61 3I55 11 J 50S ribosomal protein L13P 2238  
62 1K8A 11 K RIBOSOMAL PROTEIN L13 2238  
63 1Q86 12 K 50S ribosomal protein L13P 2238  
64 1M1K 11 K RIBOSOMAL PROTEIN L13 2238  
65 3G4S 11 J 50S ribosomal protein L13P 2238  
66 1W2B 14 I 50S RIBOSOMAL PROTEIN L13P 2238  
67 2QA4 12 J 50S ribosomal protein L13P 2238  
68 1Q7Y 12 K 50S ribosomal protein L13P 2238  
69 4V4P 12 AM 50S ribosomal protein L13 300852  
70 4V4R 34 BN 50S ribosomal protein L13 274  
71 4V4S 34 BN 50S ribosomal protein L13 274  
72 4V4T 33 BN 50S ribosomal protein L13 274  
73 4V4N 54 AI 50S ribosomal protein L13P SEE REMARK 999 2190  
74 4V6U 47 BI 50S ribosomal protein L13P 186497  
75 4ADX 20 J RPL13 187420  
76 1ML5 34 m 50S RIBOSOMAL PROTEIN L13 562  
77 4V42 36 BM 50S RIBOSOMAL PROTEIN L13 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 623
95% 36 68 459
90% 36 68 483
70% 36 68 517
50% 36 117 234
40% 36 117 264
30% 38 317 47
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47737
95% 1 1 33521
90% 1 1 32049
70% 36 68 510
50% 36 115 238
40% 36 115 274
30% 36 115 294
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 284
95% 36 74 405
90% 36 74 430
70% 36 74 458
50% 36 74 501
40% 36 74 538
30% 37 309 55
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 282
95% 36 74 403
90% 36 74 428
70% 36 74 456
50% 36 76 482
40% 36 76 516
30% 36 78 508
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 461
90% 36 68 486
70% 36 68 520
50% 36 70 545
40% 36 70 578
30% 36 70 579
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1647
95% 36 68 457
90% 36 68 481
70% 36 68 515
50% 36 68 574
40% 36 70 577
30% 36 71 560
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 463
90% 36 68 488
70% 36 68 522
50% 36 70 548
40% 36 70 582
30% 36 71 563
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 333
95% 36 68 455
90% 36 68 479
70% 36 68 513
50% 36 68 571
40% 36 68 609
30% 36 118 281
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 408
90% 36 74 433
70% 36 74 462
50% 36 76 484
40% 36 78 499
30% 37 272 70
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 407
90% 36 74 432
70% 36 74 461
50% 36 124 220
40% 36 124 247
30% 36 124 265
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 307
95% 34 70 440
90% 34 70 462
70% 34 70 496
50% 34 70 549
40% 34 70 583
30% 34 70 581
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 409
90% 36 74 434
70% 36 74 463
50% 36 74 505
40% 36 74 541
30% 36 74 540
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 456
90% 36 68 480
70% 36 68 514
50% 36 68 572
40% 36 70 576
30% 36 71 559
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 465
90% 36 68 490
70% 36 68 524
50% 36 68 579
40% 36 68 616
30% 36 68 609
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50679
95% 3 5 11214
90% 3 5 11033
70% 3 5 10428
50% 3 5 9377
40% 3 5 8553
30% 3 5 7507
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56257
95% 1 1 39269
90% 1 1 37554
70% 3 21 2232
50% 7 30 1515
40% 7 73 412
30% 26 96 334
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 467
90% 36 68 492
70% 36 68 526
50% 36 69 562
40% 36 69 601
30% 36 69 598
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57525
95% 36 68 468
90% 36 68 493
70% 36 68 527
50% 36 117 236
40% 36 117 266
30% 36 117 284
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 464
90% 36 68 489
70% 36 68 523
50% 36 68 578
40% 36 68 615
30% 36 116 290
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 318
95% 36 68 454
90% 36 68 478
70% 36 68 512
50% 36 68 569
40% 36 116 268
30% 38 312 54
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1630
95% 35 67 471
90% 35 67 496
70% 35 67 533
50% 35 114 242
40% 35 116 267
30% 35 116 289
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42086
95% 36 74 397
90% 36 74 423
70% 36 74 452
50% 36 74 495
40% 36 121 252
30% 36 121 268
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7689
95% 36 74 401
90% 36 74 426
70% 36 74 455
50% 36 74 498
40% 36 76 515
30% 36 77 514
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 283
95% 36 74 404
90% 36 74 429
70% 36 74 457
50% 36 74 499
40% 36 121 253
30% 36 121 269
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1657
95% 3 21 2177
90% 36 68 485
70% 36 68 519
50% 51 95 298
40% 58 105 287
30% 58 107 303
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49706
95% 1 1 34625
90% 1 7 7970
70% 3 27 1648
50% 36 74 500
40% 36 78 496
30% 36 78 510
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 285
95% 36 74 406
90% 36 74 431
70% 36 74 459
50% 36 74 502
40% 37 77 507
30% 37 78 511
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.