Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 799
95 % 36 68 632
90 % 36 68 659
70 % 36 68 700
50 % 36 168 203
40 % 36 168 224
30 % 44 495 30
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57535
95 % 1 1 40079
90 % 1 1 38166
70 % 36 68 691
50 % 36 164 212
40 % 36 164 234
30 % 36 164 239
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 391
95 % 36 74 551
90 % 36 74 584
70 % 36 74 617
50 % 36 74 666
40 % 36 74 708
30 % 43 481 35
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 389
95 % 36 74 549
90 % 36 74 582
70 % 36 74 614
50 % 36 76 645
40 % 36 76 689
30 % 36 79 663
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 448
95 % 36 68 633
90 % 36 68 661
70 % 36 68 702
50 % 36 70 720
40 % 36 70 760
30 % 36 70 760
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2115
95 % 36 68 631
90 % 36 68 657
70 % 36 68 698
50 % 36 68 750
40 % 36 72 729
30 % 36 72 727
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 450
95 % 36 68 636
90 % 36 68 663
70 % 36 68 707
50 % 36 70 721
40 % 36 70 761
30 % 36 71 742
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 458
95 % 36 68 628
90 % 36 68 654
70 % 36 68 694
50 % 36 68 747
40 % 36 68 780
30 % 36 167 234
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 398
95 % 36 74 558
90 % 36 74 589
70 % 36 74 623
50 % 36 76 647
40 % 36 78 666
30 % 43 396 56
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 397
95 % 36 74 557
90 % 36 74 588
70 % 36 74 622
50 % 36 172 198
40 % 36 172 219
30 % 36 172 227
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 430
95 % 34 70 609
90 % 34 70 636
70 % 34 70 670
50 % 34 70 722
40 % 34 70 763
30 % 34 70 762
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 399
95 % 36 74 559
90 % 36 74 590
70 % 36 74 624
50 % 36 74 671
40 % 36 74 712
30 % 36 74 711
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 446
95 % 36 68 630
90 % 36 68 656
70 % 36 68 696
50 % 36 68 748
40 % 36 70 757
30 % 36 71 740
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 452
95 % 36 68 638
90 % 36 68 665
70 % 36 68 709
50 % 36 68 754
40 % 36 68 784
30 % 36 68 785
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60821
95 % 3 5 13606
90 % 3 5 13361
70 % 3 5 12538
50 % 3 5 11209
40 % 3 5 10174
30 % 3 5 8829
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67053
95 % 1 1 46457
90 % 1 1 44199
70 % 3 21 2783
50 % 7 30 1856
40 % 7 121 306
30 % 26 144 268
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 453
95 % 36 68 639
90 % 36 68 666
70 % 36 68 711
50 % 36 69 733
40 % 36 69 774
30 % 36 69 776
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68440
95 % 36 68 640
90 % 36 68 667
70 % 36 68 712
50 % 36 165 205
40 % 36 165 229
30 % 36 165 236
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 451
95 % 36 68 637
90 % 36 68 664
70 % 36 68 708
50 % 36 68 753
40 % 36 68 783
30 % 36 161 243
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 444
95 % 36 68 627
90 % 36 68 653
70 % 36 68 693
50 % 36 68 746
40 % 36 166 227
30 % 44 486 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2095
95 % 36 68 624
90 % 36 68 651
70 % 36 68 690
50 % 36 163 211
40 % 36 165 228
30 % 36 165 235
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50907
95 % 36 74 543
90 % 36 74 578
70 % 36 74 609
50 % 36 74 659
40 % 36 172 217
30 % 36 172 225
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9604
95 % 36 74 545
90 % 36 74 580
70 % 36 74 613
50 % 36 74 662
40 % 36 76 687
30 % 36 77 681
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 390
95 % 36 74 550
90 % 36 74 583
70 % 36 74 615
50 % 36 74 664
40 % 37 172 218
30 % 37 172 226
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2125
95 % 3 21 2752
90 % 36 68 660
70 % 36 68 701
50 % 51 105 307
40 % 58 120 278
30 % 58 122 277
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59753
95 % 1 1 41317
90 % 1 7 9702
70 % 3 27 2056
50 % 36 74 665
40 % 36 79 654
30 % 36 79 666
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 392
95 % 36 74 552
90 % 36 74 585
70 % 36 74 620
50 % 36 74 669
40 % 37 77 679
30 % 37 78 673

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1J3A 1 A 50S ribosomal protein L13P 53953
2 4V9F 12 J 50S ribosomal protein L13P 2238
3 1VQO 12 J 50S ribosomal protein L13P 2238
4 1VQ8 12 J 50S ribosomal protein L13P 2238
5 1S72 12 J 50S ribosomal protein L13P 2238
6 1JJ2 11 I RIBOSOMAL PROTEIN L13 2238
7 1YHQ 12 J 50S ribosomal protein L13P 2238
8 1VQP 12 J 50S ribosomal protein L13P 2238
9 1VQM 12 J 50S ribosomal protein L13P 2238
10 3CC2 10 J 50S ribosomal protein L13P 2238
11 1VQL 12 J 50S ribosomal protein L13P 2238
12 1VQK 12 J 50S ribosomal protein L13P 2238
13 1VQN 13 J 50S ribosomal protein L13P 2238
14 1YIJ 12 J 50S ribosomal protein L13P 2238
15 1YI2 12 J 50S ribosomal protein L13P 2238
16 1VQ9 12 J 50S ribosomal protein L13P 2238
17 1VQ7 12 J 50S ribosomal protein L13P 2238
18 3CCM 10 J 50S ribosomal protein L13P 2238
19 1VQ5 12 J 50S ribosomal protein L13P 2238
20 3CCJ 10 J 50S ribosomal protein L13P 2238
21 3CC7 10 J 50S ribosomal protein L13P 2238
22 1YIT 16 J 50S RIBOSOMAL PROTEIN L13P 2238
23 3CCE 10 J 50S ribosomal protein L13P 2238
24 3G6E 11 J 50S ribosomal protein L13P 2238
25 3CPW 11 I 50S ribosomal protein L13P 2238
26 3CCU 10 J 50S ribosomal protein L13P 2238
27 1VQ6 13 J 50S ribosomal protein L13P 2238
28 1M90 12 K RIBOSOMAL PROTEIN L13 2238
29 3CCL 10 J 50S ribosomal protein L13P 2238
30 1YJW 16 J 50S RIBOSOMAL PROTEIN L13P 2238
31 1YJ9 12 J 50S ribosomal protein L13P 2238
32 3CD6 10 J 50S ribosomal protein L13P 2238
33 3CCV 10 J 50S ribosomal protein L13P 2238
34 3CC4 10 J 50S ribosomal protein L13P 2238
35 2OTL 11 J 50S ribosomal protein L13P 2238
36 3G71 11 J 50S ribosomal protein L13P 2238
37 1FFK 9 G RIBOSOMAL PROTEIN L13 2238
38 1VQ4 12 J 50S ribosomal protein L13P 2238
39 1YJN 12 J 50S ribosomal protein L13P 2238
40 3CMA 10 J 50S ribosomal protein L13P 2238
41 3CCS 10 J 50S ribosomal protein L13P 2238
42 3CCQ 10 J 50S ribosomal protein L13P 2238
43 3I56 10 J 50S ribosomal protein L13P 2238
44 3CCR 10 J 50S ribosomal protein L13P 2238
45 2OTJ 11 J 50S ribosomal protein L13P 2238
46 1KQS 13 I RIBOSOMAL PROTEIN L13 2238
47 3OW2 11 I 50S ribosomal protein L13P 2238
48 3CXC 12 I RIBOSOMAL PROTEIN L13 2238
49 1QVG 12 I 50S ribosomal protein L13P 2238
50 3CME 10 J 50S ribosomal protein L13P 2238
51 2QEX 11 J 50S ribosomal protein L13P 2238
52 1KC8 11 K RIBOSOMAL PROTEIN L13 2238
53 1N8R 11 K 50S ribosomal protein L13P 2238
54 1Q81 12 K 50S ribosomal protein L13P 2238
55 1Q82 12 K 50S ribosomal protein L13P 2238
56 1QVF 12 I 50S ribosomal protein L13P 2238
57 1NJI 11 K 50S ribosomal protein L13P 2238
58 1K73 11 K RIBOSOMAL PROTEIN L13 2238
59 1K9M 11 K RIBOSOMAL PROTEIN L13 2238
60 1KD1 11 K RIBOSOMAL PROTEIN L13 2238
61 3I55 11 J 50S ribosomal protein L13P 2238
62 1K8A 11 K RIBOSOMAL PROTEIN L13 2238
63 1Q86 12 K 50S ribosomal protein L13P 2238
64 1M1K 11 K RIBOSOMAL PROTEIN L13 2238
65 3G4S 11 J 50S ribosomal protein L13P 2238
66 1W2B 14 I 50S RIBOSOMAL PROTEIN L13P 2238
67 2QA4 12 J 50S ribosomal protein L13P 2238
68 1Q7Y 12 K 50S ribosomal protein L13P 2238
69 4V4P 12 AM 50S ribosomal protein L13 274
70 4V4R 34 BN 50S ribosomal protein L13 274
71 4V4S 34 BN 50S ribosomal protein L13 274
72 4V4T 33 BN 50S ribosomal protein L13 274
73 4V4N 54 AI 50S ribosomal protein L13P SEE REMARK 999 2190
74 4V6U 47 BI 50S ribosomal protein L13P 2261
75 4ADX 20 J RPL13 145262
76 1ML5 34 m 50S RIBOSOMAL PROTEIN L13 562
77 4V42 36 BM 50S RIBOSOMAL PROTEIN L13 274