Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 763
95 % 36 68 547
90 % 36 68 577
70 % 36 68 627
50 % 36 146 223
40 % 36 146 249
30 % 44 450 34
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56081
95 % 1 1 39110
90 % 1 1 37261
70 % 36 68 620
50 % 36 142 231
40 % 36 142 260
30 % 36 142 268
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 322
95 % 36 74 477
90 % 36 74 507
70 % 36 74 551
50 % 36 74 638
40 % 36 74 684
30 % 43 439 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 320
95 % 36 74 475
90 % 36 74 505
70 % 36 74 548
50 % 36 76 619
40 % 36 76 659
30 % 36 78 648
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 367
95 % 36 68 549
90 % 36 68 579
70 % 36 68 630
50 % 36 70 691
40 % 36 70 737
30 % 36 70 740
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2010
95 % 36 68 546
90 % 36 68 575
70 % 36 68 626
50 % 36 68 715
40 % 36 70 734
30 % 36 71 723
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 369
95 % 36 68 551
90 % 36 68 581
70 % 36 68 633
50 % 36 70 692
40 % 36 70 738
30 % 36 71 726
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 380
95 % 36 68 544
90 % 36 68 573
70 % 36 68 624
50 % 36 68 713
40 % 36 68 751
30 % 36 145 262
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 328
95 % 36 74 482
90 % 36 74 513
70 % 36 74 558
50 % 36 76 622
40 % 36 78 637
30 % 43 376 55
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 326
95 % 36 74 480
90 % 36 74 511
70 % 36 74 556
50 % 36 150 218
40 % 36 150 240
30 % 36 150 252
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 349
95 % 34 70 521
90 % 34 70 549
70 % 34 70 601
50 % 34 70 693
40 % 34 70 739
30 % 34 70 741
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 329
95 % 36 74 483
90 % 36 74 514
70 % 36 74 559
50 % 36 74 643
40 % 36 74 689
30 % 36 74 692
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 364
95 % 36 68 545
90 % 36 68 574
70 % 36 68 625
50 % 36 68 714
40 % 36 70 732
30 % 36 71 722
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 371
95 % 36 68 553
90 % 36 68 583
70 % 36 68 635
50 % 36 68 719
40 % 36 68 755
30 % 36 68 759
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59312
95 % 3 5 13235
90 % 3 5 12995
70 % 3 5 12228
50 % 3 5 10936
40 % 3 5 9948
30 % 3 5 8649
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65429
95 % 1 1 45371
90 % 1 1 43207
70 % 3 21 2661
50 % 7 30 1792
40 % 7 99 369
30 % 26 122 316
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 372
95 % 36 68 554
90 % 36 68 584
70 % 36 68 636
50 % 36 69 703
40 % 36 69 746
30 % 36 69 752
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66792
95 % 36 68 556
90 % 36 68 586
70 % 36 68 637
50 % 36 143 226
40 % 36 143 254
30 % 36 143 264
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 370
95 % 36 68 552
90 % 36 68 582
70 % 36 68 634
50 % 36 68 718
40 % 36 68 754
30 % 36 140 274
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 363
95 % 36 68 543
90 % 36 68 572
70 % 36 68 623
50 % 36 68 712
40 % 36 145 251
30 % 44 445 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1987
95 % 36 68 541
90 % 36 68 569
70 % 36 68 619
50 % 36 141 230
40 % 36 143 253
30 % 36 143 263
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49593
95 % 36 74 468
90 % 36 74 498
70 % 36 74 544
50 % 36 74 632
40 % 36 150 238
30 % 36 150 251
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9274
95 % 36 74 471
90 % 36 74 501
70 % 36 74 547
50 % 36 74 634
40 % 36 76 658
30 % 36 77 658
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 476
90 % 36 74 506
70 % 36 74 549
50 % 36 74 636
40 % 37 151 237
30 % 37 151 250
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2019
95 % 3 21 2614
90 % 36 68 578
70 % 36 68 628
50 % 51 103 297
40 % 58 117 270
30 % 58 119 282
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58257
95 % 1 1 40327
90 % 1 7 9427
70 % 3 27 1962
50 % 36 74 637
40 % 36 79 629
30 % 36 79 641
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 323
95 % 36 74 478
90 % 36 74 509
70 % 36 74 554
50 % 36 74 641
40 % 37 77 649
30 % 37 78 651

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1J3A 1 A 50S ribosomal protein L13P 53953
2 4V9F 12 J 50S ribosomal protein L13P 2238
3 1VQO 12 J 50S ribosomal protein L13P 2238
4 1VQ8 12 J 50S ribosomal protein L13P 2238
5 1S72 12 J 50S ribosomal protein L13P 2238
6 1JJ2 11 I RIBOSOMAL PROTEIN L13 2238
7 1YHQ 12 J 50S ribosomal protein L13P 2238
8 1VQP 12 J 50S ribosomal protein L13P 2238
9 1VQM 12 J 50S ribosomal protein L13P 2238
10 3CC2 10 J 50S ribosomal protein L13P 2238
11 1VQL 12 J 50S ribosomal protein L13P 2238
12 1VQK 12 J 50S ribosomal protein L13P 2238
13 1VQN 13 J 50S ribosomal protein L13P 2238
14 1YIJ 12 J 50S ribosomal protein L13P 2238
15 1YI2 12 J 50S ribosomal protein L13P 2238
16 1VQ9 12 J 50S ribosomal protein L13P 2238
17 1VQ7 12 J 50S ribosomal protein L13P 2238
18 3CCM 10 J 50S ribosomal protein L13P 2238
19 1VQ5 12 J 50S ribosomal protein L13P 2238
20 3CCJ 10 J 50S ribosomal protein L13P 2238
21 3CC7 10 J 50S ribosomal protein L13P 2238
22 1YIT 16 J 50S RIBOSOMAL PROTEIN L13P 2238
23 3CCE 10 J 50S ribosomal protein L13P 2238
24 3G6E 11 J 50S ribosomal protein L13P 2238
25 3CPW 11 I 50S ribosomal protein L13P 2238
26 3CCU 10 J 50S ribosomal protein L13P 2238
27 1VQ6 13 J 50S ribosomal protein L13P 2238
28 1M90 12 K RIBOSOMAL PROTEIN L13 2238
29 3CCL 10 J 50S ribosomal protein L13P 2238
30 1YJW 16 J 50S RIBOSOMAL PROTEIN L13P 2238
31 1YJ9 12 J 50S ribosomal protein L13P 2238
32 3CD6 10 J 50S ribosomal protein L13P 2238
33 3CCV 10 J 50S ribosomal protein L13P 2238
34 3CC4 10 J 50S ribosomal protein L13P 2238
35 2OTL 11 J 50S ribosomal protein L13P 2238
36 3G71 11 J 50S ribosomal protein L13P 2238
37 1FFK 9 G RIBOSOMAL PROTEIN L13 2238
38 1VQ4 12 J 50S ribosomal protein L13P 2238
39 1YJN 12 J 50S ribosomal protein L13P 2238
40 3CMA 10 J 50S ribosomal protein L13P 2238
41 3CCS 10 J 50S ribosomal protein L13P 2238
42 3CCQ 10 J 50S ribosomal protein L13P 2238
43 3I56 10 J 50S ribosomal protein L13P 2238
44 3CCR 10 J 50S ribosomal protein L13P 2238
45 2OTJ 11 J 50S ribosomal protein L13P 2238
46 1KQS 13 I RIBOSOMAL PROTEIN L13 2238
47 3OW2 11 I 50S ribosomal protein L13P 2238
48 3CXC 12 I RIBOSOMAL PROTEIN L13 2238
49 1QVG 12 I 50S ribosomal protein L13P 2238
50 3CME 10 J 50S ribosomal protein L13P 2238
51 2QEX 11 J 50S ribosomal protein L13P 2238
52 1KC8 11 K RIBOSOMAL PROTEIN L13 2238
53 1N8R 11 K 50S ribosomal protein L13P 2238
54 1Q81 12 K 50S ribosomal protein L13P 2238
55 1Q82 12 K 50S ribosomal protein L13P 2238
56 1QVF 12 I 50S ribosomal protein L13P 2238
57 1NJI 11 K 50S ribosomal protein L13P 2238
58 1K73 11 K RIBOSOMAL PROTEIN L13 2238
59 1K9M 11 K RIBOSOMAL PROTEIN L13 2238
60 1KD1 11 K RIBOSOMAL PROTEIN L13 2238
61 3I55 11 J 50S ribosomal protein L13P 2238
62 1K8A 11 K RIBOSOMAL PROTEIN L13 2238
63 1Q86 12 K 50S ribosomal protein L13P 2238
64 1M1K 11 K RIBOSOMAL PROTEIN L13 2238
65 3G4S 11 J 50S ribosomal protein L13P 2238
66 1W2B 14 I 50S RIBOSOMAL PROTEIN L13P 2238
67 2QA4 12 J 50S ribosomal protein L13P 2238
68 1Q7Y 12 K 50S ribosomal protein L13P 2238
69 4V4P 12 AM 50S ribosomal protein L13 274
70 4V4R 34 BN 50S ribosomal protein L13 274
71 4V4S 34 BN 50S ribosomal protein L13 274
72 4V4T 33 BN 50S ribosomal protein L13 274
73 4V4N 54 AI 50S ribosomal protein L13P SEE REMARK 999 2190
74 4V6U 47 BI 50S ribosomal protein L13P 2261
75 4ADX 20 J RPL13 145262
76 1ML5 34 m 50S RIBOSOMAL PROTEIN L13 562
77 4V42 36 BM 50S RIBOSOMAL PROTEIN L13 274