Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 641
95 % 35 68 781 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 812
70 % 35 68 862
50 % 35 215 204
40 % 45 647 23
30 % 45 647 40
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50309
95 % 1 1 41664
90 % 1 1 39661
70 % 35 68 863
50 % 35 214 205
40 % 35 214 224
30 % 35 214 241
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 581
95 % 35 74 717 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 741
70 % 35 74 785
50 % 35 74 838
40 % 35 212 225
30 % 35 212 243
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 572
95 % 35 74 703 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 728
70 % 35 74 774
50 % 35 76 805
40 % 35 76 836
30 % 35 79 805
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 654
95 % 35 68 797 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 829
70 % 35 68 880
50 % 35 70 886
40 % 35 70 915
30 % 35 70 906
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2980
95 % 35 68 802 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 834
70 % 35 68 883
50 % 35 68 931
40 % 35 72 887
30 % 35 72 889
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 642
95 % 35 68 782 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 813
70 % 35 68 864
50 % 35 70 896
40 % 35 70 929
30 % 35 71 901
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 669
95 % 35 68 787 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 819
70 % 35 68 869
50 % 35 68 921
40 % 35 68 949
30 % 35 212 242
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 584
95 % 35 74 718 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 744
70 % 35 74 790
50 % 35 77 796
40 % 44 496 40
30 % 44 496 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 577
95 % 35 74 710 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 734
70 % 35 74 779
50 % 35 221 203
40 % 35 222 218
30 % 35 222 235
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 615
95 % 33 70 755 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 787
70 % 33 70 829
50 % 33 70 887
40 % 33 70 916
30 % 33 70 907
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 578
95 % 35 74 711 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 735
70 % 35 74 780
50 % 35 74 830
40 % 44 451 51
30 % 44 477 65
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 647
95 % 35 68 788 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 820
70 % 35 68 870
50 % 35 68 922
40 % 35 70 919
30 % 35 71 900
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 643
95 % 35 68 798 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 830
70 % 35 68 881
50 % 35 68 929
40 % 35 68 956
30 % 35 70 913
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60829
95 % 3 5 15894 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 15549
70 % 3 5 14477
50 % 3 5 12780
40 % 3 5 11446
30 % 3 5 9741
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2887
95 % 3 21 3227 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 3 21 3288
70 % 3 21 3234
50 % 7 30 2201
40 % 7 164 283
30 % 9 168 289
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 655
95 % 35 68 783 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 814
70 % 35 68 865
50 % 35 69 899
40 % 35 69 933
30 % 35 69 918
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57257
95 % 35 68 791 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 823
70 % 35 68 874
50 % 35 207 209
40 % 35 207 229
30 % 35 207 246
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 640
95 % 35 68 780 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 811
70 % 35 68 861
50 % 35 68 915
40 % 35 202 234
30 % 35 202 250
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 652
95 % 35 68 795 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 827
70 % 35 68 858
50 % 35 68 927
40 % 35 212 226
30 % 45 636 41
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 25 2333
95 % 35 68 796 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 828
70 % 35 68 878
50 % 35 205 210
40 % 35 205 230
30 % 35 205 248
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63257
95 % 35 74 715 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 739
70 % 35 74 783
50 % 35 74 837
40 % 35 220 219
30 % 35 220 237
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 926
95 % 35 74 702 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 727
70 % 35 74 773
50 % 35 74 823
40 % 35 76 835
30 % 36 78 815
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 580
95 % 35 74 713 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 738
70 % 35 74 782
50 % 35 74 835
40 % 36 214 221
30 % 36 214 239
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2902
95 % 3 21 3240 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 810
70 % 35 68 859
50 % 51 108 412
40 % 58 133 331
30 % 72 292 155
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63255
95 % 1 1 51510
90 % 1 7 11754
70 % 3 27 2526
50 % 35 74 824
40 % 35 79 801
30 % 35 79 804
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 576
95 % 35 74 708 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 724
70 % 35 74 770
50 % 35 74 827
40 % 36 78 823
30 % 36 78 819

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1J3A 1 A 50S ribosomal protein L13P 53953
2 4V9F 12 J 50S ribosomal protein L13P 2238
3 1VQO 12 J 50S ribosomal protein L13P 2238
4 1VQ8 12 J 50S ribosomal protein L13P 2238
5 1S72 12 J 50S ribosomal protein L13P 2238
6 1JJ2 11 I RIBOSOMAL PROTEIN L13 2238
7 1YHQ 12 J 50S ribosomal protein L13P 2238
8 1VQP 12 J 50S ribosomal protein L13P 2238
9 1VQM 12 J 50S ribosomal protein L13P 2238
10 3CC2 10 J 50S ribosomal protein L13P 2238
11 1VQL 12 J 50S ribosomal protein L13P 2238
12 1VQK 12 J 50S ribosomal protein L13P 2238
13 1VQN 13 J 50S ribosomal protein L13P 2238
14 1YIJ 12 J 50S ribosomal protein L13P 2238
15 1YI2 12 J 50S ribosomal protein L13P 2238
16 1VQ9 12 J 50S ribosomal protein L13P 2238
17 1VQ7 12 J 50S ribosomal protein L13P 2238
18 3CCM 10 J 50S ribosomal protein L13P 2238
19 1VQ5 12 J 50S ribosomal protein L13P 2238
20 3CC7 10 J 50S ribosomal protein L13P 2238
21 1YIT 16 J 50S RIBOSOMAL PROTEIN L13P 2238
22 3CCE 10 J 50S ribosomal protein L13P 2238
23 3G6E 11 J 50S ribosomal protein L13P 2238
24 3CPW 11 I 50S ribosomal protein L13P 2238
25 3CCU 10 J 50S ribosomal protein L13P 2238
26 1VQ6 13 J 50S ribosomal protein L13P 2238
27 1M90 12 K RIBOSOMAL PROTEIN L13 2238
28 3CCL 10 J 50S ribosomal protein L13P 2238
29 1YJW 16 J 50S RIBOSOMAL PROTEIN L13P 2238
30 1YJ9 12 J 50S ribosomal protein L13P 2238
31 3CD6 10 J 50S ribosomal protein L13P 2238
32 3CCV 10 J 50S ribosomal protein L13P 2238
33 3CC4 10 J 50S ribosomal protein L13P 2238
34 2OTL 11 J 50S ribosomal protein L13P 2238
35 3G71 11 J 50S ribosomal protein L13P 2238
36 1FFK 9 G RIBOSOMAL PROTEIN L13 2238
37 1VQ4 12 J 50S ribosomal protein L13P 2238
38 1YJN 12 J 50S ribosomal protein L13P 2238
39 3CMA 10 J 50S ribosomal protein L13P 2238
40 3CCS 10 J 50S ribosomal protein L13P 2238
41 3CCQ 10 J 50S ribosomal protein L13P 2238
42 3I56 10 J 50S ribosomal protein L13P 2238
43 3CCR 10 J 50S ribosomal protein L13P 2238
44 2OTJ 11 J 50S ribosomal protein L13P 2238
45 1KQS 13 I RIBOSOMAL PROTEIN L13 2238
46 3OW2 11 I 50S ribosomal protein L13P 2238
47 3CXC 12 I RIBOSOMAL PROTEIN L13 2238
48 1QVG 12 I 50S ribosomal protein L13P 2238
49 3CME 10 J 50S ribosomal protein L13P 2238
50 2QEX 11 J 50S ribosomal protein L13P 2238
51 1KC8 11 K RIBOSOMAL PROTEIN L13 2238
52 1N8R 11 K 50S ribosomal protein L13P 2238
53 1Q81 12 K 50S ribosomal protein L13P 2238
54 1Q82 12 K 50S ribosomal protein L13P 2238
55 1QVF 12 I 50S ribosomal protein L13P 2238
56 1NJI 11 K 50S ribosomal protein L13P 2238
57 1K73 11 K RIBOSOMAL PROTEIN L13 2238
58 1K9M 11 K RIBOSOMAL PROTEIN L13 2238
59 1KD1 11 K RIBOSOMAL PROTEIN L13 2238
60 3I55 11 J 50S ribosomal protein L13P 2238
61 1K8A 11 K RIBOSOMAL PROTEIN L13 2238
62 1Q86 12 K 50S ribosomal protein L13P 2238
63 1M1K 11 K RIBOSOMAL PROTEIN L13 2238
64 3G4S 11 J 50S ribosomal protein L13P 2238
65 3CCJ 10 J 50S ribosomal protein L13P 2238
66 1W2B 14 I 50S RIBOSOMAL PROTEIN L13P 2238
67 2QA4 12 J 50S ribosomal protein L13P 2238
68 1Q7Y 12 K 50S ribosomal protein L13P 2238
69 4V4P 12 AM 50S ribosomal protein L13 274
70 4V4R 34 BN 50S ribosomal protein L13 274
71 4V4S 34 BN 50S ribosomal protein L13 274
72 4V4T 33 BN 50S ribosomal protein L13 274
73 4V4N 54 AI 50S ribosomal protein L13P SEE REMARK 999 2190
74 4V6U 47 BI 50S ribosomal protein L13P 2261
75 4ADX 20 J RPL13 145262
76 4V4B 32 BM 60S ribosomal protein L16-A 4932
77 1ML5 34 m 50S RIBOSOMAL PROTEIN L13 562
78 4V42 36 BM 50S RIBOSOMAL PROTEIN L13 274