Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 827
95 % 36 68 653
90 % 36 68 682
70 % 36 68 727
50 % 36 175 201
40 % 36 175 222
30 % 44 509 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58549
95 % 1 1 40812
90 % 1 1 38857
70 % 36 68 719
50 % 36 171 206
40 % 36 171 230
30 % 36 171 236
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 416
95 % 36 74 577
90 % 36 74 608
70 % 36 74 639
50 % 36 74 688
40 % 36 74 727
30 % 43 491 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 414
95 % 36 74 575
90 % 36 74 606
70 % 36 74 636
50 % 36 76 661
40 % 36 76 702
30 % 36 79 674
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 465
95 % 36 68 654
90 % 36 68 684
70 % 36 68 729
50 % 36 70 751
40 % 36 70 788
30 % 36 70 781
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2158
95 % 36 68 652
90 % 36 68 680
70 % 36 68 725
50 % 36 68 779
40 % 36 72 754
30 % 36 72 749
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 467
95 % 36 68 657
90 % 36 68 686
70 % 36 68 732
50 % 36 70 754
40 % 36 70 791
30 % 36 71 762
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 482
95 % 36 68 650
90 % 36 68 678
70 % 36 68 722
50 % 36 68 776
40 % 36 68 813
30 % 36 174 230
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 422
95 % 36 74 582
90 % 36 74 612
70 % 36 74 645
50 % 36 76 665
40 % 36 78 681
30 % 43 399 58
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 420
95 % 36 74 580
90 % 36 74 611
70 % 36 74 644
50 % 36 179 195
40 % 36 179 213
30 % 36 179 225
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 447
95 % 34 70 628
90 % 34 70 656
70 % 34 70 703
50 % 34 70 756
40 % 34 70 795
30 % 34 70 787
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 423
95 % 36 74 583
90 % 36 74 613
70 % 36 74 646
50 % 36 74 693
40 % 36 74 730
30 % 36 74 726
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 463
95 % 36 68 651
90 % 36 68 679
70 % 36 68 723
50 % 36 68 777
40 % 36 70 785
30 % 36 71 759
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 469
95 % 36 68 659
90 % 36 68 688
70 % 36 68 734
50 % 36 68 782
40 % 36 68 817
30 % 36 68 808
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61882
95 % 3 5 13836
90 % 3 5 13582
70 % 3 5 12745
50 % 3 5 11385
40 % 3 5 10328
30 % 3 5 8968
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68168
95 % 1 1 47244
90 % 1 1 44917
70 % 3 21 2827
50 % 7 30 1894
40 % 7 128 298
30 % 26 151 269
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 470
95 % 36 68 660
90 % 36 68 689
70 % 36 68 736
50 % 36 69 766
40 % 36 69 807
30 % 36 69 800
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69569
95 % 36 68 661
90 % 36 68 690
70 % 36 68 737
50 % 36 172 203
40 % 36 172 228
30 % 36 172 234
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 468
95 % 36 68 658
90 % 36 68 687
70 % 36 68 733
50 % 36 68 781
40 % 36 68 816
30 % 36 168 242
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 462
95 % 36 68 649
90 % 36 68 677
70 % 36 68 721
50 % 36 68 775
40 % 36 173 224
30 % 44 500 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2141
95 % 36 68 647
90 % 36 68 675
70 % 36 68 718
50 % 36 170 205
40 % 36 172 227
30 % 36 172 232
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51833
95 % 36 74 567
90 % 36 74 599
70 % 36 74 631
50 % 36 74 682
40 % 36 179 211
30 % 36 179 222
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9754
95 % 36 74 571
90 % 36 74 604
70 % 36 74 635
50 % 36 74 684
40 % 36 76 700
30 % 37 78 682
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 415
95 % 36 74 576
90 % 36 74 607
70 % 36 74 637
50 % 36 74 686
40 % 37 179 212
30 % 37 179 224
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2169
95 % 3 21 2798
90 % 36 68 683
70 % 36 68 728
50 % 51 105 319
40 % 58 122 276
30 % 58 124 277
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60793
95 % 1 1 42063
90 % 1 7 9846
70 % 3 27 2105
50 % 36 74 687
40 % 36 79 670
30 % 36 79 676
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 417
95 % 36 74 578
90 % 36 74 609
70 % 36 74 642
50 % 36 74 692
40 % 37 77 693
30 % 37 78 685

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1J3A 1 A 50S ribosomal protein L13P 53953
2 4V9F 12 J 50S ribosomal protein L13P 2238
3 1VQO 12 J 50S ribosomal protein L13P 2238
4 1VQ8 12 J 50S ribosomal protein L13P 2238
5 1S72 12 J 50S ribosomal protein L13P 2238
6 1JJ2 11 I RIBOSOMAL PROTEIN L13 2238
7 1YHQ 12 J 50S ribosomal protein L13P 2238
8 1VQP 12 J 50S ribosomal protein L13P 2238
9 1VQM 12 J 50S ribosomal protein L13P 2238
10 3CC2 10 J 50S ribosomal protein L13P 2238
11 1VQL 12 J 50S ribosomal protein L13P 2238
12 1VQK 12 J 50S ribosomal protein L13P 2238
13 1VQN 13 J 50S ribosomal protein L13P 2238
14 1YIJ 12 J 50S ribosomal protein L13P 2238
15 1YI2 12 J 50S ribosomal protein L13P 2238
16 1VQ9 12 J 50S ribosomal protein L13P 2238
17 1VQ7 12 J 50S ribosomal protein L13P 2238
18 3CCM 10 J 50S ribosomal protein L13P 2238
19 1VQ5 12 J 50S ribosomal protein L13P 2238
20 3CCJ 10 J 50S ribosomal protein L13P 2238
21 3CC7 10 J 50S ribosomal protein L13P 2238
22 1YIT 16 J 50S RIBOSOMAL PROTEIN L13P 2238
23 3CCE 10 J 50S ribosomal protein L13P 2238
24 3G6E 11 J 50S ribosomal protein L13P 2238
25 3CPW 11 I 50S ribosomal protein L13P 2238
26 3CCU 10 J 50S ribosomal protein L13P 2238
27 1VQ6 13 J 50S ribosomal protein L13P 2238
28 1M90 12 K RIBOSOMAL PROTEIN L13 2238
29 3CCL 10 J 50S ribosomal protein L13P 2238
30 1YJW 16 J 50S RIBOSOMAL PROTEIN L13P 2238
31 1YJ9 12 J 50S ribosomal protein L13P 2238
32 3CD6 10 J 50S ribosomal protein L13P 2238
33 3CCV 10 J 50S ribosomal protein L13P 2238
34 3CC4 10 J 50S ribosomal protein L13P 2238
35 2OTL 11 J 50S ribosomal protein L13P 2238
36 3G71 11 J 50S ribosomal protein L13P 2238
37 1FFK 9 G RIBOSOMAL PROTEIN L13 2238
38 1VQ4 12 J 50S ribosomal protein L13P 2238
39 1YJN 12 J 50S ribosomal protein L13P 2238
40 3CMA 10 J 50S ribosomal protein L13P 2238
41 3CCS 10 J 50S ribosomal protein L13P 2238
42 3CCQ 10 J 50S ribosomal protein L13P 2238
43 3I56 10 J 50S ribosomal protein L13P 2238
44 3CCR 10 J 50S ribosomal protein L13P 2238
45 2OTJ 11 J 50S ribosomal protein L13P 2238
46 1KQS 13 I RIBOSOMAL PROTEIN L13 2238
47 3OW2 11 I 50S ribosomal protein L13P 2238
48 3CXC 12 I RIBOSOMAL PROTEIN L13 2238
49 1QVG 12 I 50S ribosomal protein L13P 2238
50 3CME 10 J 50S ribosomal protein L13P 2238
51 2QEX 11 J 50S ribosomal protein L13P 2238
52 1KC8 11 K RIBOSOMAL PROTEIN L13 2238
53 1N8R 11 K 50S ribosomal protein L13P 2238
54 1Q81 12 K 50S ribosomal protein L13P 2238
55 1Q82 12 K 50S ribosomal protein L13P 2238
56 1QVF 12 I 50S ribosomal protein L13P 2238
57 1NJI 11 K 50S ribosomal protein L13P 2238
58 1K73 11 K RIBOSOMAL PROTEIN L13 2238
59 1K9M 11 K RIBOSOMAL PROTEIN L13 2238
60 1KD1 11 K RIBOSOMAL PROTEIN L13 2238
61 3I55 11 J 50S ribosomal protein L13P 2238
62 1K8A 11 K RIBOSOMAL PROTEIN L13 2238
63 1Q86 12 K 50S ribosomal protein L13P 2238
64 1M1K 11 K RIBOSOMAL PROTEIN L13 2238
65 3G4S 11 J 50S ribosomal protein L13P 2238
66 1W2B 14 I 50S RIBOSOMAL PROTEIN L13P 2238
67 2QA4 12 J 50S ribosomal protein L13P 2238
68 1Q7Y 12 K 50S ribosomal protein L13P 2238
69 4V4P 12 AM 50S ribosomal protein L13 274
70 4V4R 34 BN 50S ribosomal protein L13 274
71 4V4S 34 BN 50S ribosomal protein L13 274
72 4V4T 33 BN 50S ribosomal protein L13 274
73 4V4N 54 AI 50S ribosomal protein L13P SEE REMARK 999 2190
74 4V6U 47 BI 50S ribosomal protein L13P 2261
75 4ADX 20 J RPL13 145262
76 1ML5 34 m 50S RIBOSOMAL PROTEIN L13 562
77 4V42 36 BM 50S RIBOSOMAL PROTEIN L13 274