Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 615
95 % 35 68 751 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 779
70 % 35 68 830
50 % 35 202 204
40 % 45 609 22
30 % 45 609 38
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48591
95 % 1 1 40279
90 % 1 1 38361
70 % 35 68 831
50 % 35 201 206
40 % 35 201 224
30 % 35 201 240
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 545
95 % 35 74 680 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 702
70 % 35 74 749
50 % 35 74 802
40 % 35 199 226
30 % 35 199 242
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 537
95 % 35 74 666 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 690
70 % 35 74 737
50 % 35 76 775
40 % 35 76 807
30 % 35 79 778
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 627
95 % 35 68 768 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 796
70 % 35 68 849
50 % 35 70 854
40 % 35 70 885
30 % 35 70 874
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2861
95 % 35 68 771 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 799
70 % 35 68 850
50 % 35 68 897
40 % 35 72 851
30 % 35 72 857
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 616
95 % 35 68 752 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 780
70 % 35 68 832
50 % 35 70 864
40 % 35 70 895
30 % 35 71 869
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 639
95 % 35 68 759 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 787
70 % 35 68 839
50 % 35 68 887
40 % 35 68 911
30 % 35 199 243
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 549
95 % 35 74 681 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 705
70 % 35 74 754
50 % 35 77 763
40 % 44 470 45
30 % 44 470 62
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 541
95 % 35 74 673 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 695
70 % 35 74 743
50 % 35 208 197
40 % 35 209 215
30 % 35 209 233
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 588
95 % 33 70 728 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 756
70 % 33 70 799
50 % 33 70 855
40 % 33 70 878
30 % 33 70 876
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 542
95 % 35 74 674 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 696
70 % 35 74 744
50 % 35 74 798
40 % 44 430 52
30 % 44 456 67
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 621
95 % 35 68 760 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 788
70 % 35 68 840
50 % 35 68 888
40 % 35 70 883
30 % 35 71 868
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 620
95 % 35 68 758 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 786
70 % 35 68 838
50 % 35 68 884
40 % 35 68 909
30 % 35 70 878
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58869
95 % 3 5 15226 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14908
70 % 3 5 13940
50 % 3 5 12340
40 % 3 5 11065
30 % 3 5 9405
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2766
95 % 3 21 3101
90 % 3 21 3152
70 % 3 21 3093
50 % 7 30 2115
40 % 7 151 284
30 % 9 155 287
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 628
95 % 35 68 753 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 781
70 % 35 68 833
50 % 35 69 866
40 % 35 69 897
30 % 35 69 885
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58868
95 % 35 68 762 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 790
70 % 35 68 843
50 % 35 194 210
40 % 35 194 231
30 % 35 194 246
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 614
95 % 35 68 750 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 778
70 % 35 68 829
50 % 35 68 880
40 % 35 189 238
30 % 35 189 254
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 625
95 % 35 68 766 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 793
70 % 35 68 826
50 % 35 68 893
40 % 35 199 227
30 % 45 598 40
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 25 2225
95 % 35 68 767 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 794
70 % 35 68 847
50 % 35 192 212
40 % 35 192 234
30 % 35 192 248
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61213
95 % 35 74 678 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 700
70 % 35 74 747
50 % 35 74 801
40 % 35 207 216
30 % 35 207 234
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 876
95 % 35 74 670 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 693
70 % 35 74 739
50 % 35 74 793
40 % 35 76 809
30 % 36 78 790
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 543
95 % 35 74 676 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 699
70 % 35 74 746
50 % 35 74 800
40 % 36 201 223
30 % 36 201 238
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2783
95 % 3 21 3115 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 776
70 % 35 68 827
50 % 51 107 401
40 % 58 128 321
30 % 72 274 155
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61210
95 % 1 1 49896
90 % 1 7 11300
70 % 3 27 2427
50 % 35 74 795
40 % 35 79 769
30 % 35 79 783
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 540
95 % 35 74 671 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 687
70 % 35 74 733
50 % 35 74 794
40 % 36 78 791
30 % 36 78 791

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1J3A 1 A 50S ribosomal protein L13P 53953
2 4V9F 12 J 50S ribosomal protein L13P 2238
3 1VQO 12 J 50S ribosomal protein L13P 2238
4 1VQ8 12 J 50S ribosomal protein L13P 2238
5 1S72 12 J 50S ribosomal protein L13P 2238
6 1JJ2 11 I RIBOSOMAL PROTEIN L13 2238
7 1YHQ 12 J 50S ribosomal protein L13P 2238
8 1VQP 12 J 50S ribosomal protein L13P 2238
9 1VQM 12 J 50S ribosomal protein L13P 2238
10 3CC2 10 J 50S ribosomal protein L13P 2238
11 1VQL 12 J 50S ribosomal protein L13P 2238
12 1VQK 12 J 50S ribosomal protein L13P 2238
13 1VQN 13 J 50S ribosomal protein L13P 2238
14 1YIJ 12 J 50S ribosomal protein L13P 2238
15 1YI2 12 J 50S ribosomal protein L13P 2238
16 1VQ9 12 J 50S ribosomal protein L13P 2238
17 1VQ7 12 J 50S ribosomal protein L13P 2238
18 3CCM 10 J 50S ribosomal protein L13P 2238
19 1VQ5 12 J 50S ribosomal protein L13P 2238
20 3CC7 10 J 50S ribosomal protein L13P 2238
21 1YIT 16 J 50S RIBOSOMAL PROTEIN L13P 2238
22 3CCE 10 J 50S ribosomal protein L13P 2238
23 3G6E 11 J 50S ribosomal protein L13P 2238
24 3CPW 11 I 50S ribosomal protein L13P 2238
25 3CCU 10 J 50S ribosomal protein L13P 2238
26 1VQ6 13 J 50S ribosomal protein L13P 2238
27 1M90 12 K RIBOSOMAL PROTEIN L13 2238
28 3CCL 10 J 50S ribosomal protein L13P 2238
29 1YJW 16 J 50S RIBOSOMAL PROTEIN L13P 2238
30 1YJ9 12 J 50S ribosomal protein L13P 2238
31 3CD6 10 J 50S ribosomal protein L13P 2238
32 3CCV 10 J 50S ribosomal protein L13P 2238
33 3CC4 10 J 50S ribosomal protein L13P 2238
34 2OTL 11 J 50S ribosomal protein L13P 2238
35 3G71 11 J 50S ribosomal protein L13P 2238
36 1FFK 9 G RIBOSOMAL PROTEIN L13 2238
37 1VQ4 12 J 50S ribosomal protein L13P 2238
38 1YJN 12 J 50S ribosomal protein L13P 2238
39 3CMA 10 J 50S ribosomal protein L13P 2238
40 3CCS 10 J 50S ribosomal protein L13P 2238
41 3CCQ 10 J 50S ribosomal protein L13P 2238
42 3I56 10 J 50S ribosomal protein L13P 2238
43 3CCR 10 J 50S ribosomal protein L13P 2238
44 2OTJ 11 J 50S ribosomal protein L13P 2238
45 1KQS 13 I RIBOSOMAL PROTEIN L13 2238
46 3OW2 11 I 50S ribosomal protein L13P 2238
47 3CXC 12 I RIBOSOMAL PROTEIN L13 2238
48 1QVG 12 I 50S ribosomal protein L13P 2238
49 3CME 10 J 50S ribosomal protein L13P 2238
50 2QEX 11 J 50S ribosomal protein L13P 2238
51 1KC8 11 K RIBOSOMAL PROTEIN L13 2238
52 1N8R 11 K 50S ribosomal protein L13P 2238
53 1Q81 12 K 50S ribosomal protein L13P 2238
54 1Q82 12 K 50S ribosomal protein L13P 2238
55 1QVF 12 I 50S ribosomal protein L13P 2238
56 1NJI 11 K 50S ribosomal protein L13P 2238
57 1K73 11 K RIBOSOMAL PROTEIN L13 2238
58 1K9M 11 K RIBOSOMAL PROTEIN L13 2238
59 1KD1 11 K RIBOSOMAL PROTEIN L13 2238
60 3I55 11 J 50S ribosomal protein L13P 2238
61 1K8A 11 K RIBOSOMAL PROTEIN L13 2238
62 1Q86 12 K 50S ribosomal protein L13P 2238
63 1M1K 11 K RIBOSOMAL PROTEIN L13 2238
64 3G4S 11 J 50S ribosomal protein L13P 2238
65 3CCJ 10 J 50S ribosomal protein L13P 2238
66 1W2B 14 I 50S RIBOSOMAL PROTEIN L13P 2238
67 2QA4 12 J 50S ribosomal protein L13P 2238
68 1Q7Y 12 K 50S ribosomal protein L13P 2238
69 4V4P 12 AM 50S ribosomal protein L13 274
70 4V4R 34 BN 50S ribosomal protein L13 274
71 4V4S 34 BN 50S ribosomal protein L13 274
72 4V4T 33 BN 50S ribosomal protein L13 274
73 4V4N 54 AI 50S ribosomal protein L13P SEE REMARK 999 2190
74 4V6U 47 BI 50S ribosomal protein L13P 2261
75 4ADX 20 J RPL13 145262
76 4V4B 32 BM 60S ribosomal protein L16-A 4932
77 1ML5 34 m 50S RIBOSOMAL PROTEIN L13 562
78 4V42 36 BM 50S RIBOSOMAL PROTEIN L13 274