Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 916
95 % 35 68 735 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 764
70 % 35 68 817
50 % 35 197 201
40 % 45 583 20
30 % 45 583 35
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63992
95 % 1 1 44588
90 % 1 1 42287
70 % 35 68 808
50 % 35 196 203
40 % 35 196 216
30 % 35 196 227
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 470
95 % 35 74 649 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 675
70 % 35 74 725
50 % 35 74 778
40 % 35 74 817
30 % 44 558 40
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 468
95 % 35 74 647 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 673
70 % 35 74 721
50 % 35 76 755
40 % 35 76 792
30 % 35 79 748
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 542
95 % 35 68 737 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 767
70 % 35 68 820
50 % 35 70 828
40 % 35 70 868
30 % 35 70 853
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2413
95 % 35 68 734 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 763
70 % 35 68 816
50 % 35 68 859
40 % 35 72 838
30 % 35 72 831
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 544
95 % 35 68 739 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 769
70 % 35 68 822
50 % 35 70 829
40 % 35 70 869
30 % 35 71 843
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 556
95 % 35 68 732 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 35 68 761
70 % 35 68 813
50 % 35 68 856
40 % 35 68 895
30 % 35 199 223
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 475
95 % 35 74 653 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 680
70 % 35 74 728
50 % 35 77 749
40 % 35 79 753
30 % 44 449 65
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 474
95 % 35 74 652 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 679
70 % 35 74 727
50 % 35 203 195
40 % 35 204 208
30 % 35 204 218
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 510
95 % 33 70 703 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 730
70 % 33 70 779
50 % 33 70 831
40 % 33 70 871
30 % 33 70 856
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 476
95 % 35 74 654 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 681
70 % 35 74 729
50 % 35 74 782
40 % 44 409 52
30 % 44 435 67
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 540
95 % 35 68 733 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 762
70 % 35 68 814
50 % 35 68 857
40 % 35 70 867
30 % 35 71 840
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 546
95 % 35 68 741 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 771
70 % 35 68 824
50 % 35 68 864
40 % 35 68 898
30 % 35 68 880
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67562
95 % 3 5 15257 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14973
70 % 3 5 14036
50 % 3 5 12446
40 % 3 5 11273
30 % 3 5 9788
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74179
95 % 1 1 51364
90 % 1 1 48669
70 % 3 21 3113
50 % 7 30 2092
40 % 7 146 272
30 % 26 169 249
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 547
95 % 35 68 742 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 772
70 % 35 68 825
50 % 35 69 843
40 % 35 69 883
30 % 35 69 867
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 75659
95 % 35 68 743 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 773
70 % 35 68 826
50 % 35 189 204
40 % 35 189 222
30 % 35 189 233
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 545
95 % 35 68 740 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 770
70 % 35 68 823
50 % 35 68 863
40 % 35 68 897
30 % 35 184 237
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 539
95 % 35 68 731 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 759
70 % 35 68 811
50 % 35 68 855
40 % 35 194 218
30 % 45 573 38
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2395
95 % 35 68 728 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 756
70 % 35 68 805
50 % 35 187 206
40 % 44 560 22
30 % 44 560 39
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56719
95 % 35 74 638 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 667
70 % 35 74 716
50 % 35 74 771
40 % 35 202 210
30 % 35 202 219
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10837
95 % 35 74 641 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 670
70 % 35 74 718
50 % 35 74 773
40 % 35 76 788
30 % 36 78 762
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 469
95 % 35 74 648 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 674
70 % 35 74 722
50 % 35 74 775
40 % 36 196 215
30 % 36 196 225
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2425
95 % 3 21 3095 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 766
70 % 35 68 819
50 % 51 107 388
40 % 58 128 286
30 % 58 130 293
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66381
95 % 1 1 45916
90 % 1 7 10900
70 % 3 27 2342
50 % 35 74 776
40 % 35 79 752
30 % 35 79 750
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 472
95 % 35 74 650
90 % 35 74 676
70 % 35 74 726
50 % 35 74 781
40 % 36 77 780
30 % 36 78 768

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1J3A 1 A 50S ribosomal protein L13P 53953
2 4V9F 12 J 50S ribosomal protein L13P 2238
3 1VQO 12 J 50S ribosomal protein L13P 2238
4 1VQ8 12 J 50S ribosomal protein L13P 2238
5 1S72 12 J 50S ribosomal protein L13P 2238
6 1JJ2 11 I RIBOSOMAL PROTEIN L13 2238
7 1YHQ 12 J 50S ribosomal protein L13P 2238
8 1VQP 12 J 50S ribosomal protein L13P 2238
9 1VQM 12 J 50S ribosomal protein L13P 2238
10 3CC2 10 J 50S ribosomal protein L13P 2238
11 1VQL 12 J 50S ribosomal protein L13P 2238
12 1VQK 12 J 50S ribosomal protein L13P 2238
13 1VQN 13 J 50S ribosomal protein L13P 2238
14 1YIJ 12 J 50S ribosomal protein L13P 2238
15 1YI2 12 J 50S ribosomal protein L13P 2238
16 1VQ9 12 J 50S ribosomal protein L13P 2238
17 1VQ7 12 J 50S ribosomal protein L13P 2238
18 3CCM 10 J 50S ribosomal protein L13P 2238
19 1VQ5 12 J 50S ribosomal protein L13P 2238
20 3CC7 10 J 50S ribosomal protein L13P 2238
21 1YIT 16 J 50S RIBOSOMAL PROTEIN L13P 2238
22 3CCE 10 J 50S ribosomal protein L13P 2238
23 3G6E 11 J 50S ribosomal protein L13P 2238
24 3CPW 11 I 50S ribosomal protein L13P 2238
25 3CCU 10 J 50S ribosomal protein L13P 2238
26 1VQ6 13 J 50S ribosomal protein L13P 2238
27 1M90 12 K RIBOSOMAL PROTEIN L13 2238
28 3CCL 10 J 50S ribosomal protein L13P 2238
29 1YJW 16 J 50S RIBOSOMAL PROTEIN L13P 2238
30 1YJ9 12 J 50S ribosomal protein L13P 2238
31 3CD6 10 J 50S ribosomal protein L13P 2238
32 3CCV 10 J 50S ribosomal protein L13P 2238
33 3CC4 10 J 50S ribosomal protein L13P 2238
34 2OTL 11 J 50S ribosomal protein L13P 2238
35 3G71 11 J 50S ribosomal protein L13P 2238
36 1FFK 9 G RIBOSOMAL PROTEIN L13 2238
37 1VQ4 12 J 50S ribosomal protein L13P 2238
38 1YJN 12 J 50S ribosomal protein L13P 2238
39 3CMA 10 J 50S ribosomal protein L13P 2238
40 3CCS 10 J 50S ribosomal protein L13P 2238
41 3CCQ 10 J 50S ribosomal protein L13P 2238
42 3I56 10 J 50S ribosomal protein L13P 2238
43 3CCR 10 J 50S ribosomal protein L13P 2238
44 2OTJ 11 J 50S ribosomal protein L13P 2238
45 1KQS 13 I RIBOSOMAL PROTEIN L13 2238
46 3OW2 11 I 50S ribosomal protein L13P 2238
47 3CXC 12 I RIBOSOMAL PROTEIN L13 2238
48 1QVG 12 I 50S ribosomal protein L13P 2238
49 3CME 10 J 50S ribosomal protein L13P 2238
50 2QEX 11 J 50S ribosomal protein L13P 2238
51 1KC8 11 K RIBOSOMAL PROTEIN L13 2238
52 1N8R 11 K 50S ribosomal protein L13P 2238
53 1Q81 12 K 50S ribosomal protein L13P 2238
54 1Q82 12 K 50S ribosomal protein L13P 2238
55 1QVF 12 I 50S ribosomal protein L13P 2238
56 1NJI 11 K 50S ribosomal protein L13P 2238
57 1K73 11 K RIBOSOMAL PROTEIN L13 2238
58 1K9M 11 K RIBOSOMAL PROTEIN L13 2238
59 1KD1 11 K RIBOSOMAL PROTEIN L13 2238
60 3I55 11 J 50S ribosomal protein L13P 2238
61 1K8A 11 K RIBOSOMAL PROTEIN L13 2238
62 1Q86 12 K 50S ribosomal protein L13P 2238
63 1M1K 11 K RIBOSOMAL PROTEIN L13 2238
64 3G4S 11 J 50S ribosomal protein L13P 2238
65 3CCJ 10 J 50S ribosomal protein L13P 2238
66 1W2B 14 I 50S RIBOSOMAL PROTEIN L13P 2238
67 2QA4 12 J 50S ribosomal protein L13P 2238
68 1Q7Y 12 K 50S ribosomal protein L13P 2238
69 4V4P 12 AM 50S ribosomal protein L13 274
70 4V4R 34 BN 50S ribosomal protein L13 274
71 4V4S 34 BN 50S ribosomal protein L13 274
72 4V4T 33 BN 50S ribosomal protein L13 274
73 4V4N 54 AI 50S ribosomal protein L13P SEE REMARK 999 2190
74 4V6U 47 BI 50S ribosomal protein L13P 2261
75 4ADX 20 J RPL13 145262
76 4V4B 32 BM 60S ribosomal protein L16-A 4932
77 1ML5 34 m 50S RIBOSOMAL PROTEIN L13 562
78 4V42 36 BM 50S RIBOSOMAL PROTEIN L13 274