Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 754
95 % 36 68 537
90 % 36 68 564
70 % 36 68 615
50 % 36 145 219
40 % 36 145 247
30 % 44 439 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55066
95 % 1 1 38429
90 % 1 1 36618
70 % 36 68 609
50 % 36 140 231
40 % 36 140 259
30 % 36 140 269
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 318
95 % 36 74 471
90 % 36 74 499
70 % 36 74 544
50 % 36 74 631
40 % 36 74 674
30 % 43 428 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 315
95 % 36 74 468
90 % 36 74 496
70 % 36 74 540
50 % 36 76 609
40 % 36 76 652
30 % 36 78 637
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 361
95 % 36 68 538
90 % 36 68 566
70 % 36 68 617
50 % 36 70 678
40 % 36 70 721
30 % 36 70 727
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1967
95 % 36 68 536
90 % 36 68 563
70 % 36 68 614
50 % 36 68 706
40 % 36 70 719
30 % 36 71 710
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 362
95 % 36 68 539
90 % 36 68 568
70 % 36 68 619
50 % 36 70 680
40 % 36 70 723
30 % 36 71 713
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 371
95 % 36 68 534
90 % 36 68 561
70 % 36 68 612
50 % 36 68 703
40 % 36 68 740
30 % 36 144 257
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 323
95 % 36 74 476
90 % 36 74 505
70 % 36 74 551
50 % 36 76 611
40 % 36 78 628
30 % 43 366 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 474
90 % 36 74 503
70 % 36 74 549
50 % 36 149 215
40 % 36 149 240
30 % 36 149 252
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 345
95 % 34 70 514
90 % 34 70 540
70 % 34 70 590
50 % 34 70 681
40 % 34 70 724
30 % 34 70 728
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 324
95 % 36 74 477
90 % 36 74 506
70 % 36 74 552
50 % 36 74 637
40 % 36 74 679
30 % 36 74 677
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 359
95 % 36 68 535
90 % 36 68 562
70 % 36 68 613
50 % 36 68 704
40 % 36 70 718
30 % 36 71 709
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 364
95 % 36 68 541
90 % 36 68 570
70 % 36 68 621
50 % 36 68 708
40 % 36 68 744
30 % 36 68 747
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58262
95 % 3 5 12992
90 % 3 5 12753
70 % 3 5 12001
50 % 3 5 10746
40 % 3 5 9787
30 % 3 5 8520
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64321
95 % 1 1 44627
90 % 1 1 42509
70 % 3 21 2614
50 % 7 30 1756
40 % 7 98 361
30 % 26 121 312
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 365
95 % 36 68 542
90 % 36 68 571
70 % 36 68 622
50 % 36 69 694
40 % 36 69 735
30 % 36 69 741
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65673
95 % 36 68 544
90 % 36 68 572
70 % 36 68 623
50 % 36 142 226
40 % 36 142 256
30 % 36 142 263
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 363
95 % 36 68 540
90 % 36 68 569
70 % 36 68 620
50 % 36 68 707
40 % 36 68 743
30 % 36 139 271
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 358
95 % 36 68 533
90 % 36 68 560
70 % 36 68 611
50 % 36 68 702
40 % 36 144 248
30 % 44 434 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1945
95 % 36 68 531
90 % 36 68 558
70 % 36 68 608
50 % 36 140 230
40 % 36 142 255
30 % 36 142 261
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48689
95 % 36 74 461
90 % 36 74 490
70 % 36 74 536
50 % 36 74 622
40 % 36 149 235
30 % 36 149 247
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9065
95 % 36 74 464
90 % 36 74 493
70 % 36 74 539
50 % 36 74 625
40 % 36 76 651
30 % 36 77 643
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 317
95 % 36 74 470
90 % 36 74 498
70 % 36 74 542
50 % 36 74 629
40 % 37 150 233
30 % 37 150 246
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1976
95 % 3 21 2571
90 % 36 68 565
70 % 36 68 616
50 % 51 97 347
40 % 58 111 309
30 % 58 113 323
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57223
95 % 1 1 39634
90 % 1 7 9235
70 % 3 27 1917
50 % 36 74 630
40 % 36 79 615
30 % 36 79 625
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 319
95 % 36 74 472
90 % 36 74 501
70 % 36 74 547
50 % 36 74 634
40 % 37 77 640
30 % 37 78 640

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 12 J 50S ribosomal protein L13P 2238
2 1VQO 12 J 50S ribosomal protein L13P 2238
3 1VQ8 12 J 50S ribosomal protein L13P 2238
4 1S72 12 J 50S ribosomal protein L13P 2238
5 1JJ2 11 I RIBOSOMAL PROTEIN L13 2238
6 1YHQ 12 J 50S ribosomal protein L13P 2238
7 1VQP 12 J 50S ribosomal protein L13P 2238
8 1VQM 12 J 50S ribosomal protein L13P 2238
9 3CC2 10 J 50S ribosomal protein L13P 2238
10 1VQL 12 J 50S ribosomal protein L13P 2238
11 1VQK 12 J 50S ribosomal protein L13P 2238
12 1VQN 13 J 50S ribosomal protein L13P 2238
13 1YIJ 12 J 50S ribosomal protein L13P 2238
14 1YI2 12 J 50S ribosomal protein L13P 2238
15 1VQ9 12 J 50S ribosomal protein L13P 2238
16 1VQ7 12 J 50S ribosomal protein L13P 2238
17 3CCM 10 J 50S ribosomal protein L13P 2238
18 1VQ5 12 J 50S ribosomal protein L13P 2238
19 3CCJ 10 J 50S ribosomal protein L13P 2238
20 3CC7 10 J 50S ribosomal protein L13P 2238
21 1YIT 16 J 50S RIBOSOMAL PROTEIN L13P 2238
22 3CCE 10 J 50S ribosomal protein L13P 2238
23 3G6E 11 J 50S ribosomal protein L13P 2238
24 3CPW 11 I 50S ribosomal protein L13P 2238
25 3CCU 10 J 50S ribosomal protein L13P 2238
26 1VQ6 13 J 50S ribosomal protein L13P 2238
27 1M90 12 K RIBOSOMAL PROTEIN L13 2238
28 3CCL 10 J 50S ribosomal protein L13P 2238
29 1YJW 16 J 50S RIBOSOMAL PROTEIN L13P 2238
30 1YJ9 12 J 50S ribosomal protein L13P 2238
31 3CD6 10 J 50S ribosomal protein L13P 2238
32 3CCV 10 J 50S ribosomal protein L13P 2238
33 3CC4 10 J 50S ribosomal protein L13P 2238
34 2OTL 11 J 50S ribosomal protein L13P 2238
35 3G71 11 J 50S ribosomal protein L13P 2238
36 1FFK 9 G RIBOSOMAL PROTEIN L13 2238
37 1VQ4 12 J 50S ribosomal protein L13P 2238
38 1YJN 12 J 50S ribosomal protein L13P 2238
39 3CMA 10 J 50S ribosomal protein L13P 2238
40 3CCS 10 J 50S ribosomal protein L13P 2238
41 3CCQ 10 J 50S ribosomal protein L13P 2238
42 3I56 10 J 50S ribosomal protein L13P 2238
43 3CCR 10 J 50S ribosomal protein L13P 2238
44 2OTJ 11 J 50S ribosomal protein L13P 2238
45 1KQS 13 I RIBOSOMAL PROTEIN L13 2238
46 3OW2 11 I 50S ribosomal protein L13P 2238
47 3CXC 12 I RIBOSOMAL PROTEIN L13 2238
48 1QVG 12 I 50S ribosomal protein L13P 2238
49 3CME 10 J 50S ribosomal protein L13P 2238
50 2QEX 11 J 50S ribosomal protein L13P 2238
51 1KC8 11 K RIBOSOMAL PROTEIN L13 2238
52 1N8R 11 K 50S ribosomal protein L13P 2238
53 1Q81 12 K 50S ribosomal protein L13P 2238
54 1Q82 12 K 50S ribosomal protein L13P 2238
55 1QVF 12 I 50S ribosomal protein L13P 2238
56 1NJI 11 K 50S ribosomal protein L13P 2238
57 1K73 11 K RIBOSOMAL PROTEIN L13 2238
58 1K9M 11 K RIBOSOMAL PROTEIN L13 2238
59 1KD1 11 K RIBOSOMAL PROTEIN L13 2238
60 3I55 11 J 50S ribosomal protein L13P 2238
61 1K8A 11 K RIBOSOMAL PROTEIN L13 2238
62 1Q86 12 K 50S ribosomal protein L13P 2238
63 1M1K 11 K RIBOSOMAL PROTEIN L13 2238
64 3G4S 11 J 50S ribosomal protein L13P 2238
65 1W2B 14 I 50S RIBOSOMAL PROTEIN L13P 2238
66 2QA4 12 J 50S ribosomal protein L13P 2238
67 1Q7Y 12 K 50S ribosomal protein L13P 2238
68 4V4P 12 AM 50S ribosomal protein L13 274
69 4V4R 34 BN 50S ribosomal protein L13 274
70 4V4S 34 BN 50S ribosomal protein L13 274
71 4V4T 33 BN 50S ribosomal protein L13 274
72 4ADX 20 J RPL13 145262
73 1ML5 34 m 50S RIBOSOMAL PROTEIN L13 562
74 4V42 36 BM 50S RIBOSOMAL PROTEIN L13 274