Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 903
95 % 35 68 724 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 756
70 % 35 68 803
50 % 35 190 200
40 % 43 564 20
30 % 43 564 37
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63150
95 % 1 1 44019
90 % 1 1 41769
70 % 35 68 794
50 % 35 187 202
40 % 35 187 222
30 % 35 187 232
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 465
95 % 35 74 643 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 670
70 % 35 74 716
50 % 35 74 767
40 % 35 74 806
30 % 42 541 41
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 463
95 % 35 74 641 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 668
70 % 35 74 713
50 % 35 76 743
40 % 35 76 780
30 % 35 79 740
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 532
95 % 35 68 726 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 759
70 % 35 68 806
50 % 35 70 815
40 % 35 70 857
30 % 35 70 842
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2387
95 % 35 68 722 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 755
70 % 35 68 802
50 % 35 68 849
40 % 35 72 827
30 % 35 72 817
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 534
95 % 35 68 728 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 761
70 % 35 68 808
50 % 35 70 816
40 % 35 70 858
30 % 35 71 830
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 546
95 % 35 68 720 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 35 68 753
70 % 35 68 799
50 % 35 68 846
40 % 35 68 885
30 % 35 190 227
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 470
95 % 35 74 648 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 675
70 % 35 74 719
50 % 35 76 748
40 % 35 78 759
30 % 42 437 63
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 469
95 % 35 74 646 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 674
70 % 35 74 718
50 % 35 194 198
40 % 35 195 210
30 % 35 195 222
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 502
95 % 33 70 697 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 725
70 % 33 70 768
50 % 33 70 817
40 % 33 70 859
30 % 33 70 844
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 471
95 % 35 74 649 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 676
70 % 35 74 720
50 % 35 74 771
40 % 42 398 53
30 % 42 424 66
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 530
95 % 35 68 721 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 754
70 % 35 68 800
50 % 35 68 847
40 % 35 70 856
30 % 35 71 827
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 536
95 % 35 68 730 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 763
70 % 35 68 810
50 % 35 68 854
40 % 35 68 888
30 % 35 68 870
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66696
95 % 3 5 15026 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14753
70 % 3 5 13841
50 % 3 5 12286
40 % 3 5 11138
30 % 3 5 9670
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73264
95 % 1 1 50743
90 % 1 1 48101
70 % 3 21 3082
50 % 7 30 2060
40 % 7 140 283
30 % 26 163 257
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 537
95 % 35 68 731 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 764
70 % 35 68 811
50 % 35 69 832
40 % 35 69 872
30 % 35 69 857
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 74733
95 % 35 68 732 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 765
70 % 35 68 812
50 % 35 183 205
40 % 35 183 224
30 % 35 183 238
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 535
95 % 35 68 729 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 762
70 % 35 68 809
50 % 35 68 853
40 % 35 68 887
30 % 35 179 241
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 529
95 % 35 68 719 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 751
70 % 35 68 797
50 % 35 68 845
40 % 35 187 221
30 % 43 554 39
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2369
95 % 35 68 717 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 749
70 % 35 68 793
50 % 35 181 206
40 % 35 183 223
30 % 35 183 236
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55988
95 % 35 74 632 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 662
70 % 35 74 708
50 % 35 74 759
40 % 35 194 211
30 % 35 194 223
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10641
95 % 35 74 635 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 665
70 % 35 74 710
50 % 35 74 761
40 % 35 76 775
30 % 36 78 755
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 464
95 % 35 74 642 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 669
70 % 35 74 714
50 % 35 74 765
40 % 36 190 216
30 % 36 190 228
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2400
95 % 3 21 3055 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 758
70 % 35 68 805
50 % 51 107 375
40 % 58 128 282
30 % 58 130 289
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65523
95 % 1 1 45341
90 % 1 7 10715
70 % 3 27 2302
50 % 35 74 766
40 % 35 79 745
30 % 35 79 743
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 467
95 % 35 74 644
90 % 35 74 671
70 % 35 74 717
50 % 35 74 770
40 % 36 77 769
30 % 36 78 760

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1JJ2 10 H RIBOSOMAL PROTEIN L10E 2238
2 1M90 11 J RIBOSOMAL PROTEIN L10E 2238
3 1FFK 8 F RIBOSOMAL PROTEIN L10E 2238
4 1KQS 12 H RIBOSOMAL PROTEIN L10E 2238
5 3OW2 10 H 50S ribosomal protein L10e 2238
6 3CXC 11 H RIBOSOMAL PROTEIN L10E 2238
7 1QVG 11 H L10 Ribosomal Protein 2238
8 1KC8 10 J RIBOSOMAL PROTEIN L10E 2238
9 1N8R 10 J 50S ribosomal protein L10e 2238
10 1Q81 11 J L10 Ribosomal Protein 2238
11 1Q82 11 J L10 Ribosomal Protein 2238
12 1QVF 11 H L10 Ribosomal Protein 2238
13 1NJI 10 J 50S ribosomal protein L10e 2238
14 1K73 10 J RIBOSOMAL PROTEIN L10E 2238
15 1K9M 10 J RIBOSOMAL PROTEIN L10E 2238
16 1KD1 10 J RIBOSOMAL PROTEIN L10E 2238
17 1K8A 10 J RIBOSOMAL PROTEIN L10E 2238
18 1Q86 11 J L10 Ribosomal Protein 2238
19 1M1K 10 J RIBOSOMAL PROTEIN L10E 2238
20 1W2B 13 H 50S RIBOSOMAL PROTEIN L10E 2238
21 1Q7Y 11 J L10 Ribosomal Protein 2238
22 4V4P 15 AP 50S ribosomal protein L16 274
23 4V4R 37 BQ 50S ribosomal protein L16 274
24 4V4S 37 BQ 50S ribosomal protein L16 274
25 4V4T 36 BQ 50S ribosomal protein L16 274
26 1ML5 37 p 50S RIBOSOMAL PROTEIN L16 562
27 4V42 39 BP 50S RIBOSOMAL PROTEIN L16 274