Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 44 828
95 % 35 68 664
90 % 35 68 692
70 % 35 68 743
50 % 35 176 200
40 % 35 176 221
30 % 43 511 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59155
95 % 1 1 41219
90 % 1 1 39227
70 % 35 68 735
50 % 35 172 209
40 % 35 172 233
30 % 35 172 237
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 417
95 % 35 74 587
90 % 35 74 618
70 % 35 74 650
50 % 35 74 695
40 % 35 74 734
30 % 42 493 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 415
95 % 35 74 585
90 % 35 74 616
70 % 35 74 647
50 % 35 76 665
40 % 35 76 708
30 % 35 79 677
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 474
95 % 35 68 665
90 % 35 68 694
70 % 35 68 745
50 % 35 70 763
40 % 35 70 798
30 % 35 70 788
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2178
95 % 35 68 663
90 % 35 68 690
70 % 35 68 741
50 % 35 68 793
40 % 35 72 762
30 % 35 72 754
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 475
95 % 35 68 668
90 % 35 68 696
70 % 35 68 748
50 % 35 70 765
40 % 35 70 800
30 % 35 71 770
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 67 488
95 % 35 68 661
90 % 35 68 688
70 % 35 68 738
50 % 35 68 790
40 % 35 68 822
30 % 35 175 231
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 422
95 % 35 74 591
90 % 35 74 622
70 % 35 74 656
50 % 35 76 669
40 % 35 78 691
30 % 42 400 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 421
95 % 35 74 590
90 % 35 74 621
70 % 35 74 655
50 % 35 180 197
40 % 35 180 216
30 % 35 180 225
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 70 451
95 % 33 70 635
90 % 33 70 663
70 % 33 70 717
50 % 33 70 766
40 % 33 70 803
30 % 33 70 792
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 423
95 % 35 74 592
90 % 35 74 623
70 % 35 74 657
50 % 35 74 700
40 % 35 74 737
30 % 35 74 729
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 472
95 % 35 68 662
90 % 35 68 689
70 % 35 68 739
50 % 35 68 791
40 % 35 70 795
30 % 35 71 767
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 477
95 % 35 68 670
90 % 35 68 698
70 % 35 68 750
50 % 35 68 796
40 % 35 68 826
30 % 35 68 813
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62504
95 % 3 5 14013
90 % 3 5 13756
70 % 3 5 12900
50 % 3 5 11510
40 % 3 5 10440
30 % 3 5 9050
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68812
95 % 1 1 47669
90 % 1 1 45311
70 % 3 21 2859
50 % 7 30 1914
40 % 7 129 302
30 % 26 152 267
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 479
95 % 35 68 673
90 % 35 68 701
70 % 35 68 754
50 % 35 69 778
40 % 35 69 814
30 % 35 69 804
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70221
95 % 35 68 674
90 % 35 68 702
70 % 35 68 755
50 % 35 173 205
40 % 35 173 228
30 % 35 173 234
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 476
95 % 35 68 669
90 % 35 68 697
70 % 35 68 749
50 % 35 68 795
40 % 35 68 825
30 % 35 169 241
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 471
95 % 35 68 660
90 % 35 68 687
70 % 35 68 737
50 % 35 68 789
40 % 35 174 226
30 % 43 502 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2162
95 % 35 68 657
90 % 35 68 684
70 % 35 68 733
50 % 35 171 208
40 % 35 173 227
30 % 35 173 233
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52389
95 % 35 74 575
90 % 35 74 607
70 % 35 74 642
50 % 35 74 688
40 % 35 180 214
30 % 35 180 223
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9863
95 % 35 74 581
90 % 35 74 614
70 % 35 74 645
50 % 35 74 690
40 % 35 76 706
30 % 36 78 685
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 416
95 % 35 74 586
90 % 35 74 617
70 % 35 74 648
50 % 35 74 693
40 % 36 180 215
30 % 36 180 224
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2190
95 % 3 21 2831
90 % 35 68 693
70 % 35 68 744
50 % 50 105 322
40 % 57 122 279
30 % 57 124 282
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61408
95 % 1 1 42472
90 % 1 7 9964
70 % 3 27 2129
50 % 35 74 694
40 % 35 79 678
30 % 35 79 679
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 418
95 % 35 74 588
90 % 35 74 619
70 % 35 74 653
50 % 35 74 699
40 % 36 77 701
30 % 36 78 688

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1JJ2 10 H RIBOSOMAL PROTEIN L10E 2238
2 1M90 11 J RIBOSOMAL PROTEIN L10E 2238
3 1FFK 8 F RIBOSOMAL PROTEIN L10E 2238
4 1KQS 12 H RIBOSOMAL PROTEIN L10E 2238
5 3OW2 10 H 50S ribosomal protein L10e 2238
6 3CXC 11 H RIBOSOMAL PROTEIN L10E 2238
7 1QVG 11 H L10 Ribosomal Protein 2238
8 1KC8 10 J RIBOSOMAL PROTEIN L10E 2238
9 1N8R 10 J 50S ribosomal protein L10e 2238
10 1Q81 11 J L10 Ribosomal Protein 2238
11 1Q82 11 J L10 Ribosomal Protein 2238
12 1QVF 11 H L10 Ribosomal Protein 2238
13 1NJI 10 J 50S ribosomal protein L10e 2238
14 1K73 10 J RIBOSOMAL PROTEIN L10E 2238
15 1K9M 10 J RIBOSOMAL PROTEIN L10E 2238
16 1KD1 10 J RIBOSOMAL PROTEIN L10E 2238
17 1K8A 10 J RIBOSOMAL PROTEIN L10E 2238
18 1Q86 11 J L10 Ribosomal Protein 2238
19 1M1K 10 J RIBOSOMAL PROTEIN L10E 2238
20 1W2B 13 H 50S RIBOSOMAL PROTEIN L10E 2238
21 1Q7Y 11 J L10 Ribosomal Protein 2238
22 4V4P 15 AP 50S ribosomal protein L16 274
23 4V4R 37 BQ 50S ribosomal protein L16 274
24 4V4S 37 BQ 50S ribosomal protein L16 274
25 4V4T 36 BQ 50S ribosomal protein L16 274
26 1ML5 37 p 50S RIBOSOMAL PROTEIN L16 562
27 4V42 39 BP 50S RIBOSOMAL PROTEIN L16 274