Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 915
95 % 35 68 732 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 762
70 % 35 68 814
50 % 35 197 200
40 % 45 580 20
30 % 45 580 35
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63891
95 % 1 1 44514
90 % 1 1 42220
70 % 35 68 805
50 % 35 196 202
40 % 35 196 215
30 % 35 196 226
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 468
95 % 35 74 646 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 672
70 % 35 74 723
50 % 35 74 775
40 % 35 74 814
30 % 44 555 41
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 466
95 % 35 74 644 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 670
70 % 35 74 719
50 % 35 76 752
40 % 35 76 788
30 % 35 79 747
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 541
95 % 35 68 734 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 765
70 % 35 68 817
50 % 35 70 825
40 % 35 70 865
30 % 35 70 850
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2412
95 % 35 68 731 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 761
70 % 35 68 813
50 % 35 68 856
40 % 35 72 835
30 % 35 72 828
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 543
95 % 35 68 736 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 767
70 % 35 68 819
50 % 35 70 826
40 % 35 70 866
30 % 35 71 840
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 554
95 % 35 68 729 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 35 68 759
70 % 35 68 810
50 % 35 68 853
40 % 35 68 893
30 % 35 199 223
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 473
95 % 35 74 650 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 677
70 % 35 74 726
50 % 35 77 745
40 % 35 79 751
30 % 44 446 65
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 472
95 % 35 74 649 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 676
70 % 35 74 725
50 % 35 203 194
40 % 35 204 207
30 % 35 204 217
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 509
95 % 33 70 700 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 727
70 % 33 70 776
50 % 33 70 828
40 % 33 70 868
30 % 33 70 853
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 474
95 % 35 74 651 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 678
70 % 35 74 727
50 % 35 74 779
40 % 44 406 53
30 % 44 432 67
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 539
95 % 35 68 730 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 760
70 % 35 68 811
50 % 35 68 854
40 % 35 70 864
30 % 35 71 837
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 545
95 % 35 68 738 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 769
70 % 35 68 821
50 % 35 68 861
40 % 35 68 896
30 % 35 68 878
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67463
95 % 3 5 15238 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14956
70 % 3 5 14022
50 % 3 5 12437
40 % 3 5 11264
30 % 3 5 9782
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74078
95 % 1 1 51292
90 % 1 1 48604
70 % 3 21 3109
50 % 7 30 2090
40 % 7 146 270
30 % 26 169 249
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 546
95 % 35 68 739 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 770
70 % 35 68 822
50 % 35 69 840
40 % 35 69 881
30 % 35 69 865
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 75558
95 % 35 68 740 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 771
70 % 35 68 823
50 % 35 189 203
40 % 35 189 221
30 % 35 189 232
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 544
95 % 35 68 737 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 768
70 % 35 68 820
50 % 35 68 860
40 % 35 68 895
30 % 35 184 236
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 538
95 % 35 68 728 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 757
70 % 35 68 808
50 % 35 68 852
40 % 35 194 217
30 % 45 570 38
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2394
95 % 35 68 725 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 754
70 % 35 68 803
50 % 35 187 205
40 % 44 557 22
30 % 44 557 39
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56633
95 % 35 74 635 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 664
70 % 35 74 714
50 % 35 74 767
40 % 35 202 209
30 % 35 202 218
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10819
95 % 35 74 638 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 667
70 % 35 74 716
50 % 35 74 769
40 % 35 76 783
30 % 36 78 760
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 467
95 % 35 74 645 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 671
70 % 35 74 720
50 % 35 74 772
40 % 36 196 214
30 % 36 196 224
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2424
95 % 3 21 3091 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 764
70 % 35 68 816
50 % 51 107 387
40 % 58 128 284
30 % 58 130 291
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66283
95 % 1 1 45845
90 % 1 7 10883
70 % 3 27 2339
50 % 35 74 773
40 % 35 79 750
30 % 35 79 749
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 470
95 % 35 74 647
90 % 35 74 673
70 % 35 74 724
50 % 35 74 778
40 % 36 77 775
30 % 36 78 766

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1JJ2 10 H RIBOSOMAL PROTEIN L10E 2238
2 1M90 11 J RIBOSOMAL PROTEIN L10E 2238
3 1FFK 8 F RIBOSOMAL PROTEIN L10E 2238
4 1KQS 12 H RIBOSOMAL PROTEIN L10E 2238
5 3OW2 10 H 50S ribosomal protein L10e 2238
6 3CXC 11 H RIBOSOMAL PROTEIN L10E 2238
7 1QVG 11 H L10 Ribosomal Protein 2238
8 1KC8 10 J RIBOSOMAL PROTEIN L10E 2238
9 1N8R 10 J 50S ribosomal protein L10e 2238
10 1Q81 11 J L10 Ribosomal Protein 2238
11 1Q82 11 J L10 Ribosomal Protein 2238
12 1QVF 11 H L10 Ribosomal Protein 2238
13 1NJI 10 J 50S ribosomal protein L10e 2238
14 1K73 10 J RIBOSOMAL PROTEIN L10E 2238
15 1K9M 10 J RIBOSOMAL PROTEIN L10E 2238
16 1KD1 10 J RIBOSOMAL PROTEIN L10E 2238
17 1K8A 10 J RIBOSOMAL PROTEIN L10E 2238
18 1Q86 11 J L10 Ribosomal Protein 2238
19 1M1K 10 J RIBOSOMAL PROTEIN L10E 2238
20 1W2B 13 H 50S RIBOSOMAL PROTEIN L10E 2238
21 1Q7Y 11 J L10 Ribosomal Protein 2238
22 4V4P 15 AP 50S ribosomal protein L16 274
23 4V4R 37 BQ 50S ribosomal protein L16 274
24 4V4S 37 BQ 50S ribosomal protein L16 274
25 4V4T 36 BQ 50S ribosomal protein L16 274
26 1ML5 37 p 50S RIBOSOMAL PROTEIN L16 562
27 4V42 39 BP 50S RIBOSOMAL PROTEIN L16 274