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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 1696 Members. Sequence cutoff: 70% Cluster size: 27 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1JJ2 10 H RIBOSOMAL PROTEIN L10E 2238  
2 1M90 11 J RIBOSOMAL PROTEIN L10E 2238  
3 1FFK 8 F RIBOSOMAL PROTEIN L10E 2238  
4 1KQS 12 H RIBOSOMAL PROTEIN L10E 2238  
5 3OW2 10 H 50S ribosomal protein L10e 2238  
6 3CXC 11 H RIBOSOMAL PROTEIN L10E 2238  
7 1QVG 11 H L10 Ribosomal Protein 2238  
8 1KC8 10 J RIBOSOMAL PROTEIN L10E 2238  
9 1N8R 10 J 50S ribosomal protein L10e 2238  
10 1Q81 11 J L10 Ribosomal Protein 2238  
11 1Q82 11 J L10 Ribosomal Protein 2238  
12 1QVF 11 H L10 Ribosomal Protein 2238  
13 1NJI 10 J 50S ribosomal protein L10e 2238  
14 1K73 10 J RIBOSOMAL PROTEIN L10E 2238  
15 1K9M 10 J RIBOSOMAL PROTEIN L10E 2238  
16 1KD1 10 J RIBOSOMAL PROTEIN L10E 2238  
17 1K8A 10 J RIBOSOMAL PROTEIN L10E 2238  
18 1Q86 11 J L10 Ribosomal Protein 2238  
19 1M1K 10 J RIBOSOMAL PROTEIN L10E 2238  
20 1W2B 13 H 50S RIBOSOMAL PROTEIN L10E 2238  
21 1Q7Y 11 J L10 Ribosomal Protein 2238  
22 4V4P 15 AP 50S ribosomal protein L16 300852  
23 4V4R 37 BQ 50S ribosomal protein L16 274  
24 4V4S 37 BQ 50S ribosomal protein L16 274  
25 4V4T 36 BQ 50S ribosomal protein L16 274  
26 1ML5 37 p 50S RIBOSOMAL PROTEIN L16 562  
27 4V42 39 BP 50S RIBOSOMAL PROTEIN L16 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 661
95% 36 68 472
90% 36 68 494
70% 36 68 534
50% 36 121 237
40% 36 121 263
30% 41 334 48
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49266
95% 1 1 34547
90% 1 1 33021
70% 36 68 526
50% 36 119 242
40% 36 119 270
30% 36 119 287
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 415
90% 36 74 439
70% 36 74 468
50% 36 74 515
40% 36 74 556
30% 40 326 52
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 413
90% 36 74 437
70% 36 74 466
50% 36 76 494
40% 36 76 532
30% 36 78 517
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 474
90% 36 68 497
70% 36 68 537
50% 36 70 573
40% 36 70 606
30% 36 70 607
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1711
95% 36 68 470
90% 36 68 492
70% 36 68 532
50% 36 68 607
40% 36 70 604
30% 36 71 587
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 476
90% 36 68 499
70% 36 68 539
50% 36 70 577
40% 36 70 611
30% 36 71 590
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 335
95% 36 68 468
90% 36 68 490
70% 36 68 530
50% 36 68 604
40% 36 68 638
30% 36 122 278
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 418
90% 36 74 442
70% 36 74 472
50% 36 76 495
40% 36 78 514
30% 40 285 71
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 417
90% 36 74 441
70% 36 74 471
50% 36 128 220
40% 36 128 247
30% 36 128 261
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 313
95% 34 70 452
90% 34 70 473
70% 34 70 509
50% 34 70 578
40% 34 70 612
30% 34 70 610
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 419
90% 36 74 443
70% 36 74 473
50% 36 74 519
40% 36 74 558
30% 36 74 554
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 469
90% 36 68 491
70% 36 68 531
50% 36 68 605
40% 36 70 603
30% 36 71 586
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 478
90% 36 68 501
70% 36 68 541
50% 36 68 611
40% 36 68 643
30% 36 68 637
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52248
95% 3 5 11516
90% 3 5 11330
70% 3 5 10718
50% 3 5 9629
40% 3 5 8789
30% 3 5 7691
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57922
95% 1 1 40373
90% 1 1 38587
70% 3 21 2305
50% 7 30 1572
40% 7 77 413
30% 26 100 333
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 480
90% 36 68 503
70% 36 68 543
50% 36 69 595
40% 36 69 628
30% 36 69 625
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59211
95% 36 68 481
90% 36 68 504
70% 36 68 544
50% 36 121 238
40% 36 121 264
30% 36 121 281
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 477
90% 36 68 500
70% 36 68 540
50% 36 68 610
40% 36 68 642
30% 36 120 286
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 467
90% 36 68 489
70% 36 68 529
50% 36 68 603
40% 36 120 267
30% 41 329 51
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1694
95% 36 68 464
90% 36 68 487
70% 36 68 525
50% 36 119 241
40% 36 121 262
30% 36 121 279
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43475
95% 36 74 407
90% 36 74 431
70% 36 74 462
50% 36 74 509
40% 36 125 252
30% 36 125 270
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7974
95% 36 74 411
90% 36 74 435
70% 36 74 465
50% 36 74 511
40% 36 76 530
30% 36 77 524
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 414
90% 36 74 438
70% 36 74 467
50% 36 74 513
40% 36 126 251
30% 36 126 268
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1722
95% 3 21 2254
90% 36 68 496
70% 36 68 536
50% 51 95 309
40% 58 105 292
30% 58 107 308
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51264
95% 1 1 35664
90% 1 7 8187
70% 3 27 1696
50% 36 74 514
40% 36 79 502
30% 36 79 510
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 416
90% 36 74 440
70% 36 74 469
50% 36 74 518
40% 37 77 523
30% 37 78 519
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.