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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 541 Members. Sequence cutoff: 50% Cluster size: 74 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 10 H 50S ribosomal protein L10e 272569  
2 1VQO 11 H 50S RIBOSOMAL PROTEIN L10E 2238  
3 1VQ8 11 H 50S RIBOSOMAL PROTEIN L10E 2238  
4 1S72 10 H 50S ribosomal protein L10e 2238  
5 1JJ2 10 H RIBOSOMAL PROTEIN L10E 2238  
6 1YHQ 10 H 50S RIBOSOMAL PROTEIN L10E 2238  
7 1VQP 11 H 50S RIBOSOMAL PROTEIN L10E 2238  
8 1VQM 11 H 50S RIBOSOMAL PROTEIN L10E 2238  
9 3CC2 8 H 50S ribosomal protein L10e 2238  
10 1VQL 11 H 50S RIBOSOMAL PROTEIN L10E 2238  
11 1VQK 11 H 50S RIBOSOMAL PROTEIN L10E 2238  
12 1VQN 12 H 50S RIBOSOMAL PROTEIN L10E 2238  
13 1YIJ 10 H 50S RIBOSOMAL PROTEIN L10E 2238  
14 1YI2 10 H 50S RIBOSOMAL PROTEIN L10E 2238  
15 1VQ9 11 H 50S RIBOSOMAL PROTEIN L10E 2238  
16 1VQ7 11 H 50S RIBOSOMAL PROTEIN L10E 2238  
17 3CCM 8 H 50S ribosomal protein L10e 2238  
18 1VQ5 11 H 50S RIBOSOMAL PROTEIN L10E 2238  
19 3CCJ 8 H 50S ribosomal protein L10e 2238  
20 3CC7 8 H 50S ribosomal protein L10e 2238  
21 1YIT 14 H 50S RIBOSOMAL PROTEIN L10E 2238  
22 3CCE 8 H 50S ribosomal protein L10e 2238  
23 3G6E 9 H 50S ribosomal protein L10e 2238  
24 3CPW 10 H 50S ribosomal protein L10e 2238  
25 3CCU 8 H 50S ribosomal protein L10e 2238  
26 1VQ6 12 H 50S RIBOSOMAL PROTEIN L10E 2238  
27 1M90 11 J RIBOSOMAL PROTEIN L10E 2238  
28 3CCL 8 H 50S ribosomal protein L10e 2238  
29 1YJW 14 H 50S RIBOSOMAL PROTEIN L10E 2238  
30 1YJ9 10 H 50S RIBOSOMAL PROTEIN L10E 2238  
31 3CD6 8 H 50S ribosomal protein L10e 2238  
32 3CCV 8 H 50S ribosomal protein L10e 2238  
33 3CC4 8 H 50S ribosomal protein L10e 2238  
34 2OTL 10 H 50S ribosomal protein L10e 2238  
35 3G71 9 H 50S ribosomal protein L10e 2238  
36 1FFK 8 F RIBOSOMAL PROTEIN L10E 2238  
37 1VQ4 11 H 50S RIBOSOMAL PROTEIN L10E 2238  
38 1YJN 10 H 50S RIBOSOMAL PROTEIN L10E 2238  
39 3CMA 8 H 50S ribosomal protein L10e 2238  
40 3CCS 8 H 50S ribosomal protein L10e 2238  
41 3CCQ 8 H 50S ribosomal protein L10e 2238  
42 3I56 8 H 50S ribosomal protein L10e 2238  
43 3CCR 8 H 50S ribosomal protein L10e 2238  
44 2OTJ 10 H 50S ribosomal protein L10e 2238  
45 1KQS 12 H RIBOSOMAL PROTEIN L10E 2238  
46 3OW2 10 H 50S ribosomal protein L10e 2238  
47 3CXC 11 H RIBOSOMAL PROTEIN L10E 2238  
48 1QVG 11 H L10 Ribosomal Protein 2238  
49 3CME 8 H 50S ribosomal protein L10e 2238  
50 2QEX 10 H 50S ribosomal protein L10e 2238  
51 1KC8 10 J RIBOSOMAL PROTEIN L10E 2238  
52 1N8R 10 J 50S ribosomal protein L10e 2238  
53 1Q81 11 J L10 Ribosomal Protein 2238  
54 1Q82 11 J L10 Ribosomal Protein 2238  
55 1QVF 11 H L10 Ribosomal Protein 2238  
56 1NJI 10 J 50S ribosomal protein L10e 2238  
57 1K73 10 J RIBOSOMAL PROTEIN L10E 2238  
58 1K9M 10 J RIBOSOMAL PROTEIN L10E 2238  
59 1KD1 10 J RIBOSOMAL PROTEIN L10E 2238  
60 3I55 9 H 50S ribosomal protein L10e 2238  
61 1K8A 10 J RIBOSOMAL PROTEIN L10E 2238  
62 1Q86 11 J L10 Ribosomal Protein 2238  
63 1M1K 10 J RIBOSOMAL PROTEIN L10E 2238  
64 3G4S 9 H 50S ribosomal protein L10e 2238  
65 1W2B 13 H 50S RIBOSOMAL PROTEIN L10E 2238  
66 2QA4 10 H 50S ribosomal protein L10e 2238  
67 1Q7Y 11 J L10 Ribosomal Protein 2238  
68 4V4P 15 AP 50S ribosomal protein L16 300852  
69 4V4R 37 BQ 50S ribosomal protein L16 274  
70 4V4S 37 BQ 50S ribosomal protein L16 274  
71 4V4T 36 BQ 50S ribosomal protein L16 274  
72 4ADX 18 H RPL10E 187420  
73 1ML5 37 p 50S RIBOSOMAL PROTEIN L16 562  
74 4V42 39 BP 50S RIBOSOMAL PROTEIN L16 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 682
95% 36 68 486
90% 36 68 509
70% 36 68 555
50% 36 125 235
40% 36 125 262
30% 41 364 44
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50499
95% 1 1 35383
90% 1 1 33795
70% 36 68 547
50% 36 123 242
40% 36 123 271
30% 36 123 286
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 421
90% 36 74 448
70% 36 74 480
50% 36 74 542
40% 36 74 582
30% 40 356 50
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 419
90% 36 74 446
70% 36 74 477
50% 36 76 515
40% 36 76 559
30% 36 78 538
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 488
90% 36 68 512
70% 36 68 558
50% 36 70 599
40% 36 70 636
30% 36 70 635
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1764
95% 36 68 484
90% 36 68 507
70% 36 68 553
50% 36 68 630
40% 36 70 635
30% 36 71 618
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 489
90% 36 68 513
70% 36 68 559
50% 36 70 601
40% 36 70 639
30% 36 71 620
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 342
95% 36 68 482
90% 36 68 505
70% 36 68 550
50% 36 68 627
40% 36 68 660
30% 36 126 275
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 298
95% 36 74 425
90% 36 74 452
70% 36 74 485
50% 36 76 522
40% 36 78 534
30% 40 311 59
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 294
95% 36 74 423
90% 36 74 450
70% 36 74 483
50% 36 132 223
40% 36 132 248
30% 36 132 261
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 318
95% 34 70 464
90% 34 70 486
70% 34 70 526
50% 34 70 602
40% 34 70 640
30% 34 70 637
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 300
95% 36 74 426
90% 36 74 453
70% 36 74 486
50% 36 74 550
40% 36 74 588
30% 36 74 582
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 483
90% 36 68 506
70% 36 68 551
50% 36 68 628
40% 36 70 634
30% 36 71 617
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 333
95% 36 68 491
90% 36 68 515
70% 36 68 561
50% 36 68 637
40% 36 68 666
30% 36 68 663
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53528
95% 3 5 11834
90% 3 5 11637
70% 3 5 10981
50% 3 5 9860
40% 3 5 9005
30% 3 5 7868
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59287
95% 1 1 41282
90% 1 1 39432
70% 3 21 2373
50% 7 30 1605
40% 7 81 405
30% 26 104 332
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 335
95% 36 68 493
90% 36 68 517
70% 36 68 564
50% 36 69 619
40% 36 69 654
30% 36 69 650
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 60594
95% 36 68 494
90% 36 68 518
70% 36 68 565
50% 36 125 236
40% 36 125 263
30% 36 125 278
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 490
90% 36 68 514
70% 36 68 560
50% 36 68 636
40% 36 68 665
30% 36 124 282
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 481
90% 36 68 504
70% 36 68 549
50% 36 68 626
40% 36 124 268
30% 41 359 49
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1743
95% 36 68 478
90% 36 68 501
70% 36 68 546
50% 36 123 241
40% 36 125 260
30% 36 125 277
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44590
95% 36 74 413
90% 36 74 440
70% 36 74 473
50% 36 74 536
40% 36 129 252
30% 36 129 267
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8230
95% 36 74 416
90% 36 74 443
70% 36 74 476
50% 36 74 538
40% 36 76 555
30% 36 77 549
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 420
90% 36 74 447
70% 36 74 478
50% 36 74 540
40% 36 130 250
30% 36 130 264
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1775
95% 3 21 2320
90% 36 68 511
70% 36 68 557
50% 51 95 321
40% 58 105 298
30% 58 107 309
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52538
95% 1 1 36518
90% 1 7 8412
70% 3 27 1744
50% 36 74 541
40% 36 79 520
30% 36 79 529
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 422
90% 36 74 449
70% 36 74 482
50% 36 74 544
40% 37 77 547
30% 37 78 541
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.