Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 751
95 % 36 68 531
90 % 36 68 559
70 % 36 68 612
50 % 36 144 216
40 % 36 144 244
30 % 44 431 32
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54768
95 % 1 1 38234
90 % 1 1 36427
70 % 36 68 606
50 % 36 139 229
40 % 36 139 258
30 % 36 139 268
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 312
95 % 36 74 465
90 % 36 74 492
70 % 36 74 537
50 % 36 74 626
40 % 36 74 669
30 % 43 420 40
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 463
90 % 36 74 490
70 % 36 74 534
50 % 36 76 605
40 % 36 76 647
30 % 36 78 629
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 358
95 % 36 68 533
90 % 36 68 562
70 % 36 68 614
50 % 36 70 677
40 % 36 70 718
30 % 36 70 725
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1955
95 % 36 68 530
90 % 36 68 558
70 % 36 68 611
50 % 36 68 705
40 % 36 70 716
30 % 36 71 708
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 359
95 % 36 68 534
90 % 36 68 564
70 % 36 68 616
50 % 36 70 679
40 % 36 70 720
30 % 36 71 711
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 369
95 % 36 68 528
90 % 36 68 556
70 % 36 68 609
50 % 36 68 702
40 % 36 68 737
30 % 36 143 257
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 317
95 % 36 74 471
90 % 36 74 499
70 % 36 74 544
50 % 36 76 607
40 % 36 78 623
30 % 43 359 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 315
95 % 36 74 469
90 % 36 74 497
70 % 36 74 542
50 % 36 148 213
40 % 36 148 239
30 % 36 148 251
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 345
95 % 34 70 511
90 % 34 70 537
70 % 34 70 588
50 % 34 70 680
40 % 34 70 721
30 % 34 70 726
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 318
95 % 36 74 472
90 % 36 74 500
70 % 36 74 545
50 % 36 74 633
40 % 36 74 674
30 % 36 74 672
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 356
95 % 36 68 529
90 % 36 68 557
70 % 36 68 610
50 % 36 68 703
40 % 36 70 715
30 % 36 71 707
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 361
95 % 36 68 536
90 % 36 68 566
70 % 36 68 618
50 % 36 68 707
40 % 36 68 741
30 % 36 68 745
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57932
95 % 3 5 12932
90 % 3 5 12692
70 % 3 5 11952
50 % 3 5 10709
40 % 3 5 9756
30 % 3 5 8490
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63949
95 % 1 1 44378
90 % 1 1 42283
70 % 3 21 2599
50 % 7 30 1742
40 % 7 97 359
30 % 26 120 315
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 363
95 % 36 68 538
90 % 36 68 568
70 % 36 68 620
50 % 36 69 693
40 % 36 69 731
30 % 36 69 739
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65294
95 % 36 68 540
90 % 36 68 569
70 % 36 68 621
50 % 36 141 224
40 % 36 141 255
30 % 36 141 265
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 360
95 % 36 68 535
90 % 36 68 565
70 % 36 68 617
50 % 36 68 706
40 % 36 68 740
30 % 36 138 270
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 527
90 % 36 68 555
70 % 36 68 608
50 % 36 68 701
40 % 36 143 246
30 % 44 426 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1931
95 % 36 68 525
90 % 36 68 553
70 % 36 68 605
50 % 36 139 228
40 % 36 141 254
30 % 36 141 263
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48444
95 % 36 74 455
90 % 36 74 483
70 % 36 74 529
50 % 36 74 618
40 % 36 148 237
30 % 36 148 249
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9021
95 % 36 74 458
90 % 36 74 486
70 % 36 74 532
50 % 36 74 621
40 % 36 76 646
30 % 36 77 636
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 464
90 % 36 74 491
70 % 36 74 535
50 % 36 74 624
40 % 37 148 238
30 % 37 148 250
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1965
95 % 3 21 2548
90 % 36 68 561
70 % 36 68 613
50 % 51 96 348
40 % 58 110 310
30 % 58 112 323
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56905
95 % 1 1 39423
90 % 1 7 9186
70 % 3 27 1906
50 % 36 74 625
40 % 36 79 609
30 % 36 79 617
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 313
95 % 36 74 466
90 % 36 74 494
70 % 36 74 539
50 % 36 74 629
40 % 37 77 633
30 % 37 78 632

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 10 H 50S ribosomal protein L10e 2238
2 1VQO 11 H 50S RIBOSOMAL PROTEIN L10E 2238
3 1VQ8 11 H 50S RIBOSOMAL PROTEIN L10E 2238
4 1S72 10 H 50S ribosomal protein L10e 2238
5 1JJ2 10 H RIBOSOMAL PROTEIN L10E 2238
6 1YHQ 10 H 50S RIBOSOMAL PROTEIN L10E 2238
7 1VQP 11 H 50S RIBOSOMAL PROTEIN L10E 2238
8 1VQM 11 H 50S RIBOSOMAL PROTEIN L10E 2238
9 3CC2 8 H 50S ribosomal protein L10e 2238
10 1VQL 11 H 50S RIBOSOMAL PROTEIN L10E 2238
11 1VQK 11 H 50S RIBOSOMAL PROTEIN L10E 2238
12 1VQN 12 H 50S RIBOSOMAL PROTEIN L10E 2238
13 1YIJ 10 H 50S RIBOSOMAL PROTEIN L10E 2238
14 1YI2 10 H 50S RIBOSOMAL PROTEIN L10E 2238
15 1VQ9 11 H 50S RIBOSOMAL PROTEIN L10E 2238
16 1VQ7 11 H 50S RIBOSOMAL PROTEIN L10E 2238
17 3CCM 8 H 50S ribosomal protein L10e 2238
18 1VQ5 11 H 50S RIBOSOMAL PROTEIN L10E 2238
19 3CCJ 8 H 50S ribosomal protein L10e 2238
20 3CC7 8 H 50S ribosomal protein L10e 2238
21 1YIT 14 H 50S RIBOSOMAL PROTEIN L10E 2238
22 3CCE 8 H 50S ribosomal protein L10e 2238
23 3G6E 9 H 50S ribosomal protein L10e 2238
24 3CPW 10 H 50S ribosomal protein L10e 2238
25 3CCU 8 H 50S ribosomal protein L10e 2238
26 1VQ6 12 H 50S RIBOSOMAL PROTEIN L10E 2238
27 1M90 11 J RIBOSOMAL PROTEIN L10E 2238
28 3CCL 8 H 50S ribosomal protein L10e 2238
29 1YJW 14 H 50S RIBOSOMAL PROTEIN L10E 2238
30 1YJ9 10 H 50S RIBOSOMAL PROTEIN L10E 2238
31 3CD6 8 H 50S ribosomal protein L10e 2238
32 3CCV 8 H 50S ribosomal protein L10e 2238
33 3CC4 8 H 50S ribosomal protein L10e 2238
34 2OTL 10 H 50S ribosomal protein L10e 2238
35 3G71 9 H 50S ribosomal protein L10e 2238
36 1FFK 8 F RIBOSOMAL PROTEIN L10E 2238
37 1VQ4 11 H 50S RIBOSOMAL PROTEIN L10E 2238
38 1YJN 10 H 50S RIBOSOMAL PROTEIN L10E 2238
39 3CMA 8 H 50S ribosomal protein L10e 2238
40 3CCS 8 H 50S ribosomal protein L10e 2238
41 3CCQ 8 H 50S ribosomal protein L10e 2238
42 3I56 8 H 50S ribosomal protein L10e 2238
43 3CCR 8 H 50S ribosomal protein L10e 2238
44 2OTJ 10 H 50S ribosomal protein L10e 2238
45 1KQS 12 H RIBOSOMAL PROTEIN L10E 2238
46 3OW2 10 H 50S ribosomal protein L10e 2238
47 3CXC 11 H RIBOSOMAL PROTEIN L10E 2238
48 1QVG 11 H L10 Ribosomal Protein 2238
49 3CME 8 H 50S ribosomal protein L10e 2238
50 2QEX 10 H 50S ribosomal protein L10e 2238
51 1KC8 10 J RIBOSOMAL PROTEIN L10E 2238
52 1N8R 10 J 50S ribosomal protein L10e 2238
53 1Q81 11 J L10 Ribosomal Protein 2238
54 1Q82 11 J L10 Ribosomal Protein 2238
55 1QVF 11 H L10 Ribosomal Protein 2238
56 1NJI 10 J 50S ribosomal protein L10e 2238
57 1K73 10 J RIBOSOMAL PROTEIN L10E 2238
58 1K9M 10 J RIBOSOMAL PROTEIN L10E 2238
59 1KD1 10 J RIBOSOMAL PROTEIN L10E 2238
60 3I55 9 H 50S ribosomal protein L10e 2238
61 1K8A 10 J RIBOSOMAL PROTEIN L10E 2238
62 1Q86 11 J L10 Ribosomal Protein 2238
63 1M1K 10 J RIBOSOMAL PROTEIN L10E 2238
64 3G4S 9 H 50S ribosomal protein L10e 2238
65 1W2B 13 H 50S RIBOSOMAL PROTEIN L10E 2238
66 2QA4 10 H 50S ribosomal protein L10e 2238
67 1Q7Y 11 J L10 Ribosomal Protein 2238
68 4V4P 15 AP 50S ribosomal protein L16 274
69 4V4R 37 BQ 50S ribosomal protein L16 274
70 4V4S 37 BQ 50S ribosomal protein L16 274
71 4V4T 36 BQ 50S ribosomal protein L16 274
72 4V3P 84 LI 60S ribosomal protein L10-1 4565
73 4V4N 61 AN 50S ribosomal protein L10E/L16 SEE REMARK 999 2190
74 4V6U 62 BN 50S ribosomal protein L10e 2261
75 4ADX 18 H RPL10E 145262
76 4V7H 33 BI 60S ribosomal protein L10 5541
77 4V4B 28 BI 60S ribosomal protein L10 4932
78 1ML5 37 p 50S RIBOSOMAL PROTEIN L16 562
79 4V42 39 BP 50S RIBOSOMAL PROTEIN L16 274