Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 755
95 % 36 68 537
90 % 36 68 565
70 % 36 68 616
50 % 36 145 221
40 % 36 145 247
30 % 44 442 34
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55176
95 % 1 1 38507
90 % 1 1 36690
70 % 36 68 610
50 % 36 140 232
40 % 36 140 260
30 % 36 140 270
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 318
95 % 36 74 471
90 % 36 74 499
70 % 36 74 544
50 % 36 74 631
40 % 36 74 676
30 % 43 431 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 315
95 % 36 74 468
90 % 36 74 496
70 % 36 74 540
50 % 36 76 609
40 % 36 76 652
30 % 36 78 637
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 362
95 % 36 68 538
90 % 36 68 567
70 % 36 68 618
50 % 36 70 679
40 % 36 70 724
30 % 36 70 729
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1967
95 % 36 68 536
90 % 36 68 564
70 % 36 68 615
50 % 36 68 706
40 % 36 70 721
30 % 36 71 711
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 363
95 % 36 68 540
90 % 36 68 570
70 % 36 68 621
50 % 36 70 681
40 % 36 70 726
30 % 36 71 715
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 372
95 % 36 68 534
90 % 36 68 562
70 % 36 68 613
50 % 36 68 703
40 % 36 68 743
30 % 36 144 257
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 323
95 % 36 74 476
90 % 36 74 505
70 % 36 74 551
50 % 36 76 611
40 % 36 78 628
30 % 43 369 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 474
90 % 36 74 503
70 % 36 74 549
50 % 36 149 215
40 % 36 149 240
30 % 36 149 252
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 346
95 % 34 70 515
90 % 34 70 542
70 % 34 70 591
50 % 34 70 682
40 % 34 70 727
30 % 34 70 730
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 324
95 % 36 74 477
90 % 36 74 506
70 % 36 74 552
50 % 36 74 637
40 % 36 74 681
30 % 36 74 679
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 360
95 % 36 68 535
90 % 36 68 563
70 % 36 68 614
50 % 36 68 704
40 % 36 70 720
30 % 36 71 710
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 365
95 % 36 68 542
90 % 36 68 572
70 % 36 68 623
50 % 36 68 709
40 % 36 68 748
30 % 36 68 751
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58375
95 % 3 5 13020
90 % 3 5 12780
70 % 3 5 12026
50 % 3 5 10766
40 % 3 5 9805
30 % 3 5 8536
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64443
95 % 1 1 44713
90 % 1 1 42589
70 % 3 21 2619
50 % 7 30 1757
40 % 7 98 363
30 % 26 121 316
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 366
95 % 36 68 543
90 % 36 68 573
70 % 36 68 624
50 % 36 69 694
40 % 36 69 737
30 % 36 69 743
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65795
95 % 36 68 545
90 % 36 68 574
70 % 36 68 625
50 % 36 142 226
40 % 36 142 256
30 % 36 142 263
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 364
95 % 36 68 541
90 % 36 68 571
70 % 36 68 622
50 % 36 68 708
40 % 36 68 747
30 % 36 139 272
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 359
95 % 36 68 533
90 % 36 68 561
70 % 36 68 612
50 % 36 68 702
40 % 36 144 248
30 % 44 437 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1945
95 % 36 68 531
90 % 36 68 559
70 % 36 68 609
50 % 36 140 231
40 % 36 142 255
30 % 36 142 261
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48790
95 % 36 74 461
90 % 36 74 490
70 % 36 74 536
50 % 36 74 622
40 % 36 149 235
30 % 36 149 247
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9103
95 % 36 74 464
90 % 36 74 493
70 % 36 74 539
50 % 36 74 625
40 % 36 76 651
30 % 36 77 644
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 317
95 % 36 74 470
90 % 36 74 498
70 % 36 74 542
50 % 36 74 629
40 % 37 150 233
30 % 37 150 246
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1976
95 % 3 21 2573
90 % 36 68 566
70 % 36 68 617
50 % 51 98 342
40 % 58 112 311
30 % 58 114 321
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57335
95 % 1 1 39714
90 % 1 7 9264
70 % 3 27 1918
50 % 36 74 630
40 % 36 79 616
30 % 36 79 626
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 319
95 % 36 74 472
90 % 36 74 501
70 % 36 74 547
50 % 36 74 634
40 % 37 77 640
30 % 37 78 640

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 10 H 50S ribosomal protein L10e 2238
2 1VQO 11 H 50S RIBOSOMAL PROTEIN L10E 2238
3 1VQ8 11 H 50S RIBOSOMAL PROTEIN L10E 2238
4 1S72 10 H 50S ribosomal protein L10e 2238
5 1JJ2 10 H RIBOSOMAL PROTEIN L10E 2238
6 1YHQ 10 H 50S RIBOSOMAL PROTEIN L10E 2238
7 1VQP 11 H 50S RIBOSOMAL PROTEIN L10E 2238
8 1VQM 11 H 50S RIBOSOMAL PROTEIN L10E 2238
9 3CC2 8 H 50S ribosomal protein L10e 2238
10 1VQL 11 H 50S RIBOSOMAL PROTEIN L10E 2238
11 1VQK 11 H 50S RIBOSOMAL PROTEIN L10E 2238
12 1VQN 12 H 50S RIBOSOMAL PROTEIN L10E 2238
13 1YIJ 10 H 50S RIBOSOMAL PROTEIN L10E 2238
14 1YI2 10 H 50S RIBOSOMAL PROTEIN L10E 2238
15 1VQ9 11 H 50S RIBOSOMAL PROTEIN L10E 2238
16 1VQ7 11 H 50S RIBOSOMAL PROTEIN L10E 2238
17 3CCM 8 H 50S ribosomal protein L10e 2238
18 1VQ5 11 H 50S RIBOSOMAL PROTEIN L10E 2238
19 3CCJ 8 H 50S ribosomal protein L10e 2238
20 3CC7 8 H 50S ribosomal protein L10e 2238
21 1YIT 14 H 50S RIBOSOMAL PROTEIN L10E 2238
22 3CCE 8 H 50S ribosomal protein L10e 2238
23 3G6E 9 H 50S ribosomal protein L10e 2238
24 3CPW 10 H 50S ribosomal protein L10e 2238
25 3CCU 8 H 50S ribosomal protein L10e 2238
26 1VQ6 12 H 50S RIBOSOMAL PROTEIN L10E 2238
27 1M90 11 J RIBOSOMAL PROTEIN L10E 2238
28 3CCL 8 H 50S ribosomal protein L10e 2238
29 1YJW 14 H 50S RIBOSOMAL PROTEIN L10E 2238
30 1YJ9 10 H 50S RIBOSOMAL PROTEIN L10E 2238
31 3CD6 8 H 50S ribosomal protein L10e 2238
32 3CCV 8 H 50S ribosomal protein L10e 2238
33 3CC4 8 H 50S ribosomal protein L10e 2238
34 2OTL 10 H 50S ribosomal protein L10e 2238
35 3G71 9 H 50S ribosomal protein L10e 2238
36 1FFK 8 F RIBOSOMAL PROTEIN L10E 2238
37 1VQ4 11 H 50S RIBOSOMAL PROTEIN L10E 2238
38 1YJN 10 H 50S RIBOSOMAL PROTEIN L10E 2238
39 3CMA 8 H 50S ribosomal protein L10e 2238
40 3CCS 8 H 50S ribosomal protein L10e 2238
41 3CCQ 8 H 50S ribosomal protein L10e 2238
42 3I56 8 H 50S ribosomal protein L10e 2238
43 3CCR 8 H 50S ribosomal protein L10e 2238
44 2OTJ 10 H 50S ribosomal protein L10e 2238
45 1KQS 12 H RIBOSOMAL PROTEIN L10E 2238
46 3OW2 10 H 50S ribosomal protein L10e 2238
47 3CXC 11 H RIBOSOMAL PROTEIN L10E 2238
48 1QVG 11 H L10 Ribosomal Protein 2238
49 3CME 8 H 50S ribosomal protein L10e 2238
50 2QEX 10 H 50S ribosomal protein L10e 2238
51 1KC8 10 J RIBOSOMAL PROTEIN L10E 2238
52 1N8R 10 J 50S ribosomal protein L10e 2238
53 1Q81 11 J L10 Ribosomal Protein 2238
54 1Q82 11 J L10 Ribosomal Protein 2238
55 1QVF 11 H L10 Ribosomal Protein 2238
56 1NJI 10 J 50S ribosomal protein L10e 2238
57 1K73 10 J RIBOSOMAL PROTEIN L10E 2238
58 1K9M 10 J RIBOSOMAL PROTEIN L10E 2238
59 1KD1 10 J RIBOSOMAL PROTEIN L10E 2238
60 3I55 9 H 50S ribosomal protein L10e 2238
61 1K8A 10 J RIBOSOMAL PROTEIN L10E 2238
62 1Q86 11 J L10 Ribosomal Protein 2238
63 1M1K 10 J RIBOSOMAL PROTEIN L10E 2238
64 3G4S 9 H 50S ribosomal protein L10e 2238
65 1W2B 13 H 50S RIBOSOMAL PROTEIN L10E 2238
66 2QA4 10 H 50S ribosomal protein L10e 2238
67 1Q7Y 11 J L10 Ribosomal Protein 2238
68 4V4P 15 AP 50S ribosomal protein L16 274
69 4V4R 37 BQ 50S ribosomal protein L16 274
70 4V4S 37 BQ 50S ribosomal protein L16 274
71 4V4T 36 BQ 50S ribosomal protein L16 274
72 4V3P 84 LI 60S ribosomal protein L10-1 4565
73 4V4N 61 AN 50S ribosomal protein L10E/L16 SEE REMARK 999 2190
74 4V6U 62 BN 50S ribosomal protein L10e 2261
75 4ADX 18 H RPL10E 145262
76 4V7H 33 BI 60S ribosomal protein L10 5541
77 4V4B 28 BI 60S ribosomal protein L10 4932
78 1ML5 37 p 50S RIBOSOMAL PROTEIN L16 562
79 4V42 39 BP 50S RIBOSOMAL PROTEIN L16 274