Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 869
95 % 35 68 701 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 731
70 % 35 68 784
50 % 35 180 201
40 % 43 543 20
30 % 43 543 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61399
95 % 1 1 42847
90 % 1 1 40717
70 % 35 68 776
50 % 35 176 205
40 % 35 176 230
30 % 35 176 242
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 447
95 % 35 74 621 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 650
70 % 35 74 693
50 % 35 74 744
40 % 35 74 780
30 % 42 523 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 445
95 % 35 74 619 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 648
70 % 35 74 690
50 % 35 76 719
40 % 35 76 755
30 % 35 79 719
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 516
95 % 35 68 703 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 734
70 % 35 68 787
50 % 35 70 797
40 % 35 70 833
30 % 35 70 820
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2279
95 % 35 68 700 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 730
70 % 35 68 783
50 % 35 68 829
40 % 35 72 808
30 % 35 72 799
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 517
95 % 35 68 705 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 736
70 % 35 68 789
50 % 35 70 798
40 % 35 70 834
30 % 35 71 809
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 526
95 % 35 68 698 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 35 68 728
70 % 35 68 780
50 % 35 68 826
40 % 35 68 861
30 % 35 179 233
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 452
95 % 35 74 625 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 654
70 % 35 74 700
50 % 35 76 724
40 % 35 78 736
30 % 42 426 59
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 451
95 % 35 74 624 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 653
70 % 35 74 698
50 % 35 183 199
40 % 35 184 218
30 % 35 184 228
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 485
95 % 33 70 674 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 700
70 % 33 70 753
50 % 33 70 799
40 % 33 70 835
30 % 33 70 822
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 453
95 % 35 74 626 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 655
70 % 35 74 701
50 % 35 74 749
40 % 42 387 52
30 % 42 413 64
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 513
95 % 35 68 699 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 729
70 % 35 68 781
50 % 35 68 827
40 % 35 70 831
30 % 35 71 807
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 519
95 % 35 68 707 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 738
70 % 35 68 791
50 % 35 68 834
40 % 35 68 865
30 % 35 68 849
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64866
95 % 3 5 14601 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14329
70 % 3 5 13461
50 % 3 5 11956
40 % 3 5 10846
30 % 3 5 9412
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71346
95 % 1 1 49513
90 % 1 1 47002
70 % 3 21 2978
50 % 7 30 1986
40 % 7 134 287
30 % 26 157 264
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 520
95 % 35 68 708 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 739
70 % 35 68 792
50 % 35 69 813
40 % 35 69 847
30 % 35 69 837
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 72797
95 % 35 68 709 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 35 68 740
70 % 35 68 793
50 % 35 177 203
40 % 35 177 226
30 % 35 177 237
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 518
95 % 35 68 706 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 737
70 % 35 68 790
50 % 35 68 833
40 % 35 68 864
30 % 35 173 245
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 512
95 % 35 68 697 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 726
70 % 35 68 778
50 % 35 68 825
40 % 35 178 222
30 % 43 534 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2262
95 % 35 68 695 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 724
70 % 35 68 775
50 % 35 175 204
40 % 35 177 225
30 % 35 177 236
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54443
95 % 35 74 611 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.3
PDBFlex
90 % 35 74 642
70 % 35 74 686
50 % 35 74 737
40 % 35 184 216
30 % 35 184 226
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10302
95 % 35 74 615 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 646
70 % 35 74 688
50 % 35 74 739
40 % 35 76 753
30 % 36 78 729
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 446
95 % 35 74 620 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 649
70 % 35 74 691
50 % 35 74 742
40 % 36 184 217
30 % 36 184 227
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2291
95 % 3 21 2944 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 733
70 % 35 68 786
50 % 50 105 350
40 % 57 126 282
30 % 57 128 284
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63722
95 % 1 1 44150
90 % 1 7 10419
70 % 3 27 2219
50 % 35 74 743
40 % 35 79 724
30 % 35 79 721
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 449
95 % 35 74 622 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 651
70 % 35 74 696
50 % 35 74 748
40 % 36 77 747
30 % 36 78 733

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 8 F 50S ribosomal protein L7Ae 2238
2 1VQO 9 F 50S ribosomal protein L7AE 2238
3 1VQ8 9 F 50S ribosomal protein L7AE 2238
4 1S72 8 F 50S ribosomal protein L7Ae 2238
5 1JJ2 8 F RIBOSOMAL PROTEIN L7AE 2238
6 1YHQ 8 F 50S ribosomal protein L7AE 2238
7 1VQP 9 F 50S ribosomal protein L7AE 2238
8 1VQM 9 F 50S ribosomal protein L7AE 2238
9 3CC2 6 F 50S ribosomal protein L7Ae 2238
10 1VQL 9 F 50S ribosomal protein L7AE 2238
11 1VQK 9 F 50S ribosomal protein L7AE 2238
12 1VQN 10 F 50S ribosomal protein L7AE 2238
13 1YIJ 8 F 50S ribosomal protein L7AE 2238
14 1YI2 8 F 50S ribosomal protein L7AE 2238
15 1VQ9 9 F 50S ribosomal protein L7AE 2238
16 1VQ7 9 F 50S ribosomal protein L7AE 2238
17 3CCM 6 F 50S ribosomal protein L7Ae 2238
18 1VQ5 9 F 50S ribosomal protein L7AE 2238
19 3CC7 6 F 50S ribosomal protein L7Ae 2238
20 1YIT 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
21 3CCE 6 F 50S ribosomal protein L7Ae 2238
22 3G6E 7 F 50S ribosomal protein L7Ae 2238
23 3CPW 8 F 50S ribosomal protein L7Ae 2238
24 3CCU 6 F 50S ribosomal protein L7Ae 2238
25 1VQ6 10 F 50S ribosomal protein L7AE 2238
26 1M90 9 H RIBOSOMAL PROTEIN L7AE 2238
27 3CCL 6 F 50S ribosomal protein L7Ae 2238
28 1YJW 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
29 1YJ9 8 F 50S ribosomal protein L7AE 2238
30 3CD6 6 F 50S ribosomal protein L7Ae 2238
31 3CCV 6 F 50S ribosomal protein L7Ae 2238
32 3CC4 6 F 50S ribosomal protein L7Ae 2238
33 2OTL 8 F 50S ribosomal protein L7Ae 2238
34 3G71 7 F 50S ribosomal protein L7Ae 2238
35 1FFK 7 E RIBOSOMAL PROTEIN L7AE 2238
36 1VQ4 9 F 50S ribosomal protein L7AE 2238
37 1YJN 8 F 50S ribosomal protein L7AE 2238
38 3CMA 6 F 50S ribosomal protein L7Ae 2238
39 3CCS 6 F 50S ribosomal protein L7Ae 2238
40 3CCQ 6 F 50S ribosomal protein L7Ae 2238
41 3I56 6 F 50S ribosomal protein L7Ae 2238
42 3CCR 6 F 50S ribosomal protein L7Ae 2238
43 2OTJ 8 F 50S ribosomal protein L7Ae 2238
44 1KQS 10 F RIBOSOMAL PROTEIN L7AE 2238
45 3OW2 8 F 50S ribosomal protein L7Ae 2238
46 3CXC 9 F RIBOSOMAL PROTEIN L7AE 2238
47 1QVG 9 F 50S ribosomal protein L7Ae 2238
48 3CME 6 F 50S ribosomal protein L7Ae 2238
49 2QEX 8 F 50S ribosomal protein L7Ae 2238
50 1KC8 8 H RIBOSOMAL PROTEIN L7AE 2238
51 1N8R 8 H 50S ribosomal protein L7Ae 2238
52 1Q81 9 H 50S ribosomal protein L7Ae 2238
53 1Q82 9 H 50S ribosomal protein L7Ae 2238
54 1QVF 9 F 50S ribosomal protein L7Ae 2238
55 1NJI 8 H 50S ribosomal protein L7Ae 2238
56 1K73 8 H RIBOSOMAL PROTEIN L7AE 2238
57 1K9M 8 H RIBOSOMAL PROTEIN L7AE 2238
58 1KD1 8 H RIBOSOMAL PROTEIN L7AE 2238
59 3I55 7 F 50S ribosomal protein L7Ae 2238
60 1K8A 8 H RIBOSOMAL PROTEIN L7AE 2238
61 1Q86 9 H 50S ribosomal protein L7Ae 2238
62 1M1K 8 H RIBOSOMAL PROTEIN L7AE 2238
63 3G4S 7 F 50S ribosomal protein L7Ae 2238
64 3CCJ 6 F 50S ribosomal protein L7Ae 2238
65 1W2B 11 F 50S RIBOSOMAL PROTEIN L7AE 2238
66 2QA4 8 F 50S ribosomal protein L7Ae 2238
67 1Q7Y 9 H 50S ribosomal protein L7Ae 2238
68 4ADX 16 F RPL7AE 145262