Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 881
95 % 35 68 707 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 737
70 % 35 68 793
50 % 35 180 205
40 % 43 546 20
30 % 43 546 34
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61907
95 % 1 1 43206
90 % 1 1 41039
70 % 35 68 785
50 % 35 176 212
40 % 35 176 233
30 % 35 176 243
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 452
95 % 35 74 628 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 657
70 % 35 74 700
50 % 35 74 754
40 % 35 74 790
30 % 42 526 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 450
95 % 35 74 626 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 655
70 % 35 74 697
50 % 35 76 729
40 % 35 76 764
30 % 35 79 725
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 520
95 % 35 68 709 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 740
70 % 35 68 796
50 % 35 70 805
40 % 35 70 844
30 % 35 70 828
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2313
95 % 35 68 706 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 736
70 % 35 68 792
50 % 35 68 836
40 % 35 72 817
30 % 35 72 804
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 521
95 % 35 68 711 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 742
70 % 35 68 798
50 % 35 70 807
40 % 35 70 845
30 % 35 71 815
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 530
95 % 35 68 704 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 35 68 734
70 % 35 68 789
50 % 35 68 833
40 % 35 68 868
30 % 35 179 234
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 457
95 % 35 74 632 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 661
70 % 35 74 707
50 % 35 76 734
40 % 35 78 743
30 % 42 429 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 456
95 % 35 74 631 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 660
70 % 35 74 705
50 % 35 183 202
40 % 35 184 220
30 % 35 184 230
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 490
95 % 33 70 680 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 706
70 % 33 70 761
50 % 33 70 808
40 % 33 70 846
30 % 33 70 830
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 458
95 % 35 74 633 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 662
70 % 35 74 708
50 % 35 74 759
40 % 42 390 53
30 % 42 416 65
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 517
95 % 35 68 705 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 735
70 % 35 68 790
50 % 35 68 834
40 % 35 70 843
30 % 35 71 813
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 523
95 % 35 68 713 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 744
70 % 35 68 800
50 % 35 68 841
40 % 35 68 872
30 % 35 68 856
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65399
95 % 3 5 14722 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14449
70 % 3 5 13558
50 % 3 5 12046
40 % 3 5 10925
30 % 3 5 9486
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71910
95 % 1 1 49897
90 % 1 1 47342
70 % 3 21 3002
50 % 7 30 2001
40 % 7 134 294
30 % 26 157 268
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 524
95 % 35 68 714 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 745
70 % 35 68 801
50 % 35 69 821
40 % 35 69 856
30 % 35 69 843
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 73368
95 % 35 68 715 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 746
70 % 35 68 802
50 % 35 177 208
40 % 35 177 229
30 % 35 177 238
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 522
95 % 35 68 712 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 743
70 % 35 68 799
50 % 35 68 840
40 % 35 68 871
30 % 35 173 246
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 516
95 % 35 68 703 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 732
70 % 35 68 787
50 % 35 68 832
40 % 35 178 225
30 % 43 537 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2296
95 % 35 68 701 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 730
70 % 35 68 784
50 % 35 175 211
40 % 35 177 228
30 % 35 177 237
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54869
95 % 35 74 618 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 649
70 % 35 74 692
50 % 35 74 746
40 % 35 184 218
30 % 35 184 227
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10402
95 % 35 74 621 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 652
70 % 35 74 694
50 % 35 74 748
40 % 35 76 760
30 % 36 78 739
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 451
95 % 35 74 627 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 656
70 % 35 74 698
50 % 35 74 752
40 % 36 184 219
30 % 36 184 229
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2325
95 % 3 21 2973 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 739
70 % 35 68 795
50 % 50 105 360
40 % 57 126 286
30 % 57 128 289
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64244
95 % 1 1 44515
90 % 1 7 10497
70 % 3 27 2234
50 % 35 74 753
40 % 35 79 729
30 % 35 79 727
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 454
95 % 35 74 629
90 % 35 74 658
70 % 35 74 703
50 % 35 74 758
40 % 36 77 752
30 % 36 78 744

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1XBI 1 A 50S ribosomal protein L7Ae 2190
2 2FC3 1 A 50S ribosomal protein L7Ae 56636
3 3PAF 1 A, B 50S ribosomal protein L7Ae 2190
4 1RA4 1 A 50S ribosomal protein L7Ae 2190
5 1SDS 2 A, B, C 50S ribosomal protein L7Ae 2190
6 2CZW 1 A 50S ribosomal protein L7Ae 53953
7 1PXW 1 A, B LSU ribosomal protein L7AE 29292
8 3HAX 3 D 50S ribosomal protein L7Ae 2261
9 4V9F 8 F 50S ribosomal protein L7Ae 2238
10 4BW0 2 B 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
11 1VQO 9 F 50S ribosomal protein L7AE 2238
12 1VQ8 9 F 50S ribosomal protein L7AE 2238
13 3LWR 3 C 50S ribosomal protein L7Ae 2261
14 1S72 8 F 50S ribosomal protein L7Ae 2238
15 1JJ2 8 F RIBOSOMAL PROTEIN L7AE 2238
16 1YHQ 8 F 50S ribosomal protein L7AE 2238
17 1VQP 9 F 50S ribosomal protein L7AE 2238
18 1VQM 9 F 50S ribosomal protein L7AE 2238
19 3CC2 6 F 50S ribosomal protein L7Ae 2238
20 1VQL 9 F 50S ribosomal protein L7AE 2238
21 1VQK 9 F 50S ribosomal protein L7AE 2238
22 3HJW 3 C 50S ribosomal protein L7Ae 2261
23 1VQN 10 F 50S ribosomal protein L7AE 2238
24 1YIJ 8 F 50S ribosomal protein L7AE 2238
25 1YI2 8 F 50S ribosomal protein L7AE 2238
26 3LWV 3 C 50S ribosomal protein L7Ae 2261
27 1VQ9 9 F 50S ribosomal protein L7AE 2238
28 2HVY 5 D 50S ribosomal protein L7Ae 2261
29 3LWP 3 C 50S ribosomal protein L7Ae 2261
30 1VQ7 9 F 50S ribosomal protein L7AE 2238
31 3CCM 6 F 50S ribosomal protein L7Ae 2238
32 1VQ5 9 F 50S ribosomal protein L7AE 2238
33 3CC7 6 F 50S ribosomal protein L7Ae 2238
34 1YIT 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
35 3CCE 6 F 50S ribosomal protein L7Ae 2238
36 3G6E 7 F 50S ribosomal protein L7Ae 2238
37 3CPW 8 F 50S ribosomal protein L7Ae 2238
38 3CCU 6 F 50S ribosomal protein L7Ae 2238
39 1VQ6 10 F 50S ribosomal protein L7AE 2238
40 1M90 9 H RIBOSOMAL PROTEIN L7AE 2238
41 3CCL 6 F 50S ribosomal protein L7Ae 2238
42 1YJW 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
43 1YJ9 8 F 50S ribosomal protein L7AE 2238
44 3CD6 6 F 50S ribosomal protein L7Ae 2238
45 3CCV 6 F 50S ribosomal protein L7Ae 2238
46 4C4W 2 C, G 50S RIBOSOMAL PROTEIN L7AE 2234
47 3CC4 6 F 50S ribosomal protein L7Ae 2238
48 2OTL 8 F 50S ribosomal protein L7Ae 2238
49 3G71 7 F 50S ribosomal protein L7Ae 2238
50 1FFK 7 E RIBOSOMAL PROTEIN L7AE 2238
51 1VQ4 9 F 50S ribosomal protein L7AE 2238
52 1YJN 8 F 50S ribosomal protein L7AE 2238
53 3CMA 6 F 50S ribosomal protein L7Ae 2238
54 3LWO 3 C 50S ribosomal protein L7Ae 2261
55 3CCS 6 F 50S ribosomal protein L7Ae 2238
56 3LWQ 3 C 50S ribosomal protein L7Ae 2261
57 3NVI 2 B, D 50S ribosomal protein L7Ae 2261
58 3CCQ 6 F 50S ribosomal protein L7Ae 2238
59 3I56 6 F 50S ribosomal protein L7Ae 2238
60 3CCR 6 F 50S ribosomal protein L7Ae 2238
61 2OTJ 8 F 50S ribosomal protein L7Ae 2238
62 1KQS 10 F RIBOSOMAL PROTEIN L7AE 2238
63 3OW2 8 F 50S ribosomal protein L7Ae 2238
64 3CXC 9 F RIBOSOMAL PROTEIN L7AE 2238
65 5G4U 2 C, D, G, H, K, L 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
66 1QVG 9 F 50S ribosomal protein L7Ae 2238
67 3NMU 2 C, G 50S ribosomal protein L7Ae 2261
68 3CME 6 F 50S ribosomal protein L7Ae 2238
69 2QEX 8 F 50S ribosomal protein L7Ae 2238
70 5GIP 2 C, D, M, N 50S ribosomal protein L7Ae UNP residues 3-127 2287
71 5FJ4 2 C, G 50S RIBOSOMAL PROTEIN L7AE RNA BINDING DOMAIN, UNP RESIDUES 5-119 2234
72 1KC8 8 H RIBOSOMAL PROTEIN L7AE 2238
73 1RLG 2 A, B 50S ribosomal protein L7Ae 2234
74 5G4V 2 C, D, G, H 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
75 1N8R 8 H 50S ribosomal protein L7Ae 2238
76 1Q81 9 H 50S ribosomal protein L7Ae 2238
77 1Q82 9 H 50S ribosomal protein L7Ae 2238
78 1QVF 9 F 50S ribosomal protein L7Ae 2238
79 1NJI 8 H 50S ribosomal protein L7Ae 2238
80 1K73 8 H RIBOSOMAL PROTEIN L7AE 2238
81 1K9M 8 H RIBOSOMAL PROTEIN L7AE 2238
82 1KD1 8 H RIBOSOMAL PROTEIN L7AE 2238
83 3I55 7 F 50S ribosomal protein L7Ae 2238
84 1K8A 8 H RIBOSOMAL PROTEIN L7AE 2238
85 1Q86 9 H 50S ribosomal protein L7Ae 2238
86 1M1K 8 H RIBOSOMAL PROTEIN L7AE 2238
87 3G4S 7 F 50S ribosomal protein L7Ae 2238
88 3CCJ 6 F 50S ribosomal protein L7Ae 2238
89 1W2B 11 F 50S RIBOSOMAL PROTEIN L7AE 2238
90 2QA4 8 F 50S ribosomal protein L7Ae 2238
91 1Q7Y 9 H 50S ribosomal protein L7Ae 2238
92 3NVK 2 E, H 50S ribosomal protein L7Ae 2261
93 3PLA 2 C, D, L 50S ribosomal protein L7Ae 2287
94 5GIN 2 C, D, L 50S ribosomal protein L7Ae 2287
95 5DCV 1 A, C 50S ribosomal protein L7Ae 53953
96 5GIO 2 C, D, L 50S ribosomal protein L7Ae UNP residues 3-127 2287
97 3ID5 3 C, G 50S ribosomal protein L7Ae 2287
98 3HAY 4 D 50S ribosomal protein L7Ae 2261
99 5JPQ 9 U, V Snu13 209285
100 5JB3 18 3 50S ribosomal protein L7Ae 50S ribosomal protein L7AE model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
101 5JBH 3 3 50S ribosomal protein uL30 50S ribosomal protein L7AE model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
102 4BY9 3 D, G, J, M 50S RIBOSOMAL PROTEIN L7AE RESIDUES 3-123 2261
103 4V4N 12 AG, B3 30S ribosomal protein L7AE SEE REMARK 999 2190
104 4V6U 20 A3, B4, BG 50S ribosomal protein L7Ae 2261
105 4ADX 16 F RPL7AE 145262