Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 901
95 % 35 68 722 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 754
70 % 35 68 801
50 % 35 190 200
40 % 43 562 20
30 % 43 562 35
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63068
95 % 1 1 43973
90 % 1 1 41727
70 % 35 68 792
50 % 35 187 201
40 % 35 187 221
30 % 35 187 231
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 463
95 % 35 74 642 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 669
70 % 35 74 715
50 % 35 74 767
40 % 35 74 804
30 % 42 539 41
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 461
95 % 35 74 640 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 667
70 % 35 74 712
50 % 35 76 743
40 % 35 76 779
30 % 35 79 738
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 531
95 % 35 68 724 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 757
70 % 35 68 804
50 % 35 70 815
40 % 35 70 856
30 % 35 70 839
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2382
95 % 35 68 720 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 753
70 % 35 68 800
50 % 35 68 846
40 % 35 72 826
30 % 35 72 814
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 532
95 % 35 68 726 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 759
70 % 35 68 806
50 % 35 70 816
40 % 35 70 857
30 % 35 71 827
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 544
95 % 35 68 718 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 35 68 751
70 % 35 68 797
50 % 35 68 843
40 % 35 68 882
30 % 35 190 227
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 469
95 % 35 74 647 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 674
70 % 35 74 718
50 % 35 76 748
40 % 35 78 758
30 % 42 435 61
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 468
95 % 35 74 645 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 673
70 % 35 74 717
50 % 35 194 198
40 % 35 195 210
30 % 35 195 222
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 501
95 % 33 70 696 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 724
70 % 33 70 767
50 % 33 70 817
40 % 33 70 858
30 % 33 70 841
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 470
95 % 35 74 648 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 675
70 % 35 74 719
50 % 35 74 771
40 % 42 396 53
30 % 42 422 67
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 529
95 % 35 68 719 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 752
70 % 35 68 798
50 % 35 68 844
40 % 35 70 855
30 % 35 71 824
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 534
95 % 35 68 728 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 761
70 % 35 68 808
50 % 35 68 851
40 % 35 68 885
30 % 35 68 867
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66605
95 % 3 5 14999 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14726
70 % 3 5 13818
50 % 3 5 12268
40 % 3 5 11121
30 % 3 5 9655
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73171
95 % 1 1 50693
90 % 1 1 48055
70 % 3 21 3076
50 % 7 30 2056
40 % 7 140 283
30 % 26 163 253
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 535
95 % 35 68 729 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 762
70 % 35 68 809
50 % 35 69 830
40 % 35 69 870
30 % 35 69 853
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 74639
95 % 35 68 730 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 763
70 % 35 68 810
50 % 35 183 205
40 % 35 183 224
30 % 35 183 238
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 533
95 % 35 68 727 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 760
70 % 35 68 807
50 % 35 68 850
40 % 35 68 884
30 % 35 179 241
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 528
95 % 35 68 717 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 749
70 % 35 68 795
50 % 35 68 842
40 % 35 187 220
30 % 43 552 40
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2364
95 % 35 68 715 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 747
70 % 35 68 791
50 % 35 181 206
40 % 35 183 223
30 % 35 183 236
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55910
95 % 35 74 631 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 661
70 % 35 74 707
50 % 35 74 759
40 % 35 194 211
30 % 35 194 223
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10616
95 % 35 74 634 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 664
70 % 35 74 709
50 % 35 74 761
40 % 35 76 774
30 % 36 78 752
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 462
95 % 35 74 641 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 668
70 % 35 74 713
50 % 35 74 765
40 % 36 190 216
30 % 36 190 228
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2395
95 % 3 21 3049 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 756
70 % 35 68 803
50 % 51 107 374
40 % 58 128 282
30 % 58 130 288
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65434
95 % 1 1 45293
90 % 1 7 10686
70 % 3 27 2296
50 % 35 74 766
40 % 35 79 744
30 % 35 79 741
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 465
95 % 35 74 643
90 % 35 74 670
70 % 35 74 716
50 % 35 74 770
40 % 36 77 768
30 % 36 78 758

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1XBI 1 A 50S ribosomal protein L7Ae 2190
2 2FC3 1 A 50S ribosomal protein L7Ae 56636
3 3PAF 1 A, B 50S ribosomal protein L7Ae 2190
4 1RA4 1 A 50S ribosomal protein L7Ae 2190
5 1SDS 2 A, B, C 50S ribosomal protein L7Ae 2190
6 2CZW 1 A 50S ribosomal protein L7Ae 53953
7 1PXW 1 A, B LSU ribosomal protein L7AE 29292
8 5XTM 1 A, C 50S ribosomal protein L7Ae 53953
9 3HAX 3 D 50S ribosomal protein L7Ae 2261
10 4V9F 8 F 50S ribosomal protein L7Ae 2238
11 4BW0 2 B 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
12 1VQO 9 F 50S ribosomal protein L7AE 2238
13 1VQ8 9 F 50S ribosomal protein L7AE 2238
14 3LWR 3 C 50S ribosomal protein L7Ae 2261
15 1S72 8 F 50S ribosomal protein L7Ae 2238
16 1JJ2 8 F RIBOSOMAL PROTEIN L7AE 2238
17 1YHQ 8 F 50S ribosomal protein L7AE 2238
18 1VQP 9 F 50S ribosomal protein L7AE 2238
19 1VQM 9 F 50S ribosomal protein L7AE 2238
20 3CC2 6 F 50S ribosomal protein L7Ae 2238
21 1VQL 9 F 50S ribosomal protein L7AE 2238
22 1VQK 9 F 50S ribosomal protein L7AE 2238
23 3HJW 3 C 50S ribosomal protein L7Ae 2261
24 1VQN 10 F 50S ribosomal protein L7AE 2238
25 1YIJ 8 F 50S ribosomal protein L7AE 2238
26 1YI2 8 F 50S ribosomal protein L7AE 2238
27 3LWV 3 C 50S ribosomal protein L7Ae 2261
28 1VQ9 9 F 50S ribosomal protein L7AE 2238
29 2HVY 5 D 50S ribosomal protein L7Ae 2261
30 3LWP 3 C 50S ribosomal protein L7Ae 2261
31 1VQ7 9 F 50S ribosomal protein L7AE 2238
32 3CCM 6 F 50S ribosomal protein L7Ae 2238
33 1VQ5 9 F 50S ribosomal protein L7AE 2238
34 3CC7 6 F 50S ribosomal protein L7Ae 2238
35 1YIT 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
36 3CCE 6 F 50S ribosomal protein L7Ae 2238
37 3G6E 7 F 50S ribosomal protein L7Ae 2238
38 3CPW 8 F 50S ribosomal protein L7Ae 2238
39 3CCU 6 F 50S ribosomal protein L7Ae 2238
40 1VQ6 10 F 50S ribosomal protein L7AE 2238
41 1M90 9 H RIBOSOMAL PROTEIN L7AE 2238
42 3CCL 6 F 50S ribosomal protein L7Ae 2238
43 1YJW 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
44 1YJ9 8 F 50S ribosomal protein L7AE 2238
45 3CD6 6 F 50S ribosomal protein L7Ae 2238
46 3CCV 6 F 50S ribosomal protein L7Ae 2238
47 4C4W 2 C, G 50S RIBOSOMAL PROTEIN L7AE 2234
48 3CC4 6 F 50S ribosomal protein L7Ae 2238
49 2OTL 8 F 50S ribosomal protein L7Ae 2238
50 3G71 7 F 50S ribosomal protein L7Ae 2238
51 1FFK 7 E RIBOSOMAL PROTEIN L7AE 2238
52 1VQ4 9 F 50S ribosomal protein L7AE 2238
53 1YJN 8 F 50S ribosomal protein L7AE 2238
54 3CMA 6 F 50S ribosomal protein L7Ae 2238
55 3LWO 3 C 50S ribosomal protein L7Ae 2261
56 3CCS 6 F 50S ribosomal protein L7Ae 2238
57 3LWQ 3 C 50S ribosomal protein L7Ae 2261
58 3NVI 2 B, D 50S ribosomal protein L7Ae 2261
59 3CCQ 6 F 50S ribosomal protein L7Ae 2238
60 3I56 6 F 50S ribosomal protein L7Ae 2238
61 3CCR 6 F 50S ribosomal protein L7Ae 2238
62 2OTJ 8 F 50S ribosomal protein L7Ae 2238
63 1KQS 10 F RIBOSOMAL PROTEIN L7AE 2238
64 3OW2 8 F 50S ribosomal protein L7Ae 2238
65 3CXC 9 F RIBOSOMAL PROTEIN L7AE 2238
66 5G4U 2 C, D, G, H, K, L 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
67 1QVG 9 F 50S ribosomal protein L7Ae 2238
68 3NMU 2 C, G 50S ribosomal protein L7Ae 2261
69 3CME 6 F 50S ribosomal protein L7Ae 2238
70 2QEX 8 F 50S ribosomal protein L7Ae 2238
71 5GIP 2 C, D, M, N 50S ribosomal protein L7Ae UNP residues 3-127 2287
72 5FJ4 2 C, G 50S RIBOSOMAL PROTEIN L7AE RNA BINDING DOMAIN, UNP RESIDUES 5-119 2234
73 1KC8 8 H RIBOSOMAL PROTEIN L7AE 2238
74 1RLG 2 A, B 50S ribosomal protein L7Ae 2234
75 5G4V 2 C, D, G, H 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
76 1N8R 8 H 50S ribosomal protein L7Ae 2238
77 1Q81 9 H 50S ribosomal protein L7Ae 2238
78 1Q82 9 H 50S ribosomal protein L7Ae 2238
79 1QVF 9 F 50S ribosomal protein L7Ae 2238
80 1NJI 8 H 50S ribosomal protein L7Ae 2238
81 1K73 8 H RIBOSOMAL PROTEIN L7AE 2238
82 1K9M 8 H RIBOSOMAL PROTEIN L7AE 2238
83 1KD1 8 H RIBOSOMAL PROTEIN L7AE 2238
84 3I55 7 F 50S ribosomal protein L7Ae 2238
85 1K8A 8 H RIBOSOMAL PROTEIN L7AE 2238
86 1Q86 9 H 50S ribosomal protein L7Ae 2238
87 1M1K 8 H RIBOSOMAL PROTEIN L7AE 2238
88 3G4S 7 F 50S ribosomal protein L7Ae 2238
89 5Y7M 1 A, C 50S ribosomal protein L7Ae 53953
90 3CCJ 6 F 50S ribosomal protein L7Ae 2238
91 1W2B 11 F 50S RIBOSOMAL PROTEIN L7AE 2238
92 2QA4 8 F 50S ribosomal protein L7Ae 2238
93 1Q7Y 9 H 50S ribosomal protein L7Ae 2238
94 3NVK 2 E, H 50S ribosomal protein L7Ae 2261
95 3PLA 2 C, D, L 50S ribosomal protein L7Ae 2287
96 5GIN 2 C, D, L 50S ribosomal protein L7Ae 2287
97 5DCV 1 A, C 50S ribosomal protein L7Ae 53953
98 5GIO 2 C, D, L 50S ribosomal protein L7Ae UNP residues 3-127 2287
99 3ID5 3 C, G 50S ribosomal protein L7Ae 2287
100 3HAY 4 D 50S ribosomal protein L7Ae 2261
101 5JPQ 9 U, V Snu13 209285
102 5JB3 18 3 50S ribosomal protein L7Ae 50S ribosomal protein L7AE model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
103 5JBH 3 3 50S ribosomal protein uL30 50S ribosomal protein L7AE model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
104 4BY9 3 D, G, J, M 50S RIBOSOMAL PROTEIN L7AE RESIDUES 3-123 2261
105 4V4N 12 AG, B3 30S ribosomal protein L7AE SEE REMARK 999 2190
106 4V6U 20 A3, B4, BG 50S ribosomal protein L7Ae 2261
107 4ADX 16 F RPL7AE 145262