Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 827
95 % 36 68 660
90 % 36 68 689
70 % 36 68 734
50 % 36 175 201
40 % 36 175 223
30 % 44 509 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58832
95 % 1 1 41000
90 % 1 1 39021
70 % 36 68 726
50 % 36 171 207
40 % 36 171 231
30 % 36 171 237
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 417
95 % 36 74 584
90 % 36 74 615
70 % 36 74 645
50 % 36 74 693
40 % 36 74 732
30 % 43 491 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 415
95 % 36 74 582
90 % 36 74 613
70 % 36 74 642
50 % 36 76 664
40 % 36 76 707
30 % 36 79 675
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 469
95 % 36 68 661
90 % 36 68 691
70 % 36 68 736
50 % 36 70 757
40 % 36 70 793
30 % 36 70 784
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2168
95 % 36 68 659
90 % 36 68 687
70 % 36 68 732
50 % 36 68 784
40 % 36 72 759
30 % 36 72 751
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 471
95 % 36 68 664
90 % 36 68 693
70 % 36 68 739
50 % 36 70 759
40 % 36 70 795
30 % 36 71 766
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 485
95 % 36 68 657
90 % 36 68 685
70 % 36 68 729
50 % 36 68 781
40 % 36 68 816
30 % 36 174 231
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 422
95 % 36 74 588
90 % 36 74 619
70 % 36 74 651
50 % 36 76 669
40 % 36 78 688
30 % 43 399 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 421
95 % 36 74 587
90 % 36 74 618
70 % 36 74 650
50 % 36 179 196
40 % 36 179 216
30 % 36 179 226
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 448
95 % 34 70 631
90 % 34 70 660
70 % 34 70 709
50 % 34 70 760
40 % 34 70 798
30 % 34 70 788
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 423
95 % 36 74 589
90 % 36 74 620
70 % 36 74 652
50 % 36 74 698
40 % 36 74 735
30 % 36 74 727
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 467
95 % 36 68 658
90 % 36 68 686
70 % 36 68 730
50 % 36 68 782
40 % 36 70 790
30 % 36 71 763
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 473
95 % 36 68 666
90 % 36 68 695
70 % 36 68 741
50 % 36 68 787
40 % 36 68 820
30 % 36 68 809
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62170
95 % 3 5 13912
90 % 3 5 13660
70 % 3 5 12818
50 % 3 5 11446
40 % 3 5 10379
30 % 3 5 9008
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68458
95 % 1 1 47435
90 % 1 1 45092
70 % 3 21 2846
50 % 7 30 1900
40 % 7 128 299
30 % 26 151 269
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 475
95 % 36 68 669
90 % 36 68 698
70 % 36 68 745
50 % 36 69 769
40 % 36 69 809
30 % 36 69 802
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69860
95 % 36 68 670
90 % 36 68 699
70 % 36 68 746
50 % 36 172 204
40 % 36 172 228
30 % 36 172 234
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 472
95 % 36 68 665
90 % 36 68 694
70 % 36 68 740
50 % 36 68 786
40 % 36 68 819
30 % 36 168 243
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 466
95 % 36 68 656
90 % 36 68 684
70 % 36 68 728
50 % 36 68 780
40 % 36 173 224
30 % 44 500 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2151
95 % 36 68 653
90 % 36 68 681
70 % 36 68 724
50 % 36 170 206
40 % 36 172 227
30 % 36 172 233
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52086
95 % 36 74 573
90 % 36 74 605
70 % 36 74 638
50 % 36 74 687
40 % 36 179 214
30 % 36 179 223
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9805
95 % 36 74 578
90 % 36 74 611
70 % 36 74 641
50 % 36 74 689
40 % 36 76 705
30 % 37 78 683
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 416
95 % 36 74 583
90 % 36 74 614
70 % 36 74 643
50 % 36 74 691
40 % 37 179 215
30 % 37 179 225
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2179
95 % 3 21 2814
90 % 36 68 690
70 % 36 68 735
50 % 51 105 321
40 % 58 122 277
30 % 58 124 279
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61078
95 % 1 1 42249
90 % 1 7 9900
70 % 3 27 2114
50 % 36 74 692
40 % 36 79 676
30 % 36 79 677
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 418
95 % 36 74 585
90 % 36 74 616
70 % 36 74 648
50 % 36 74 697
40 % 37 77 700
30 % 37 78 686

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1XBI 1 A 50S ribosomal protein L7Ae 2190
2 2FC3 1 A 50S ribosomal protein L7Ae 56636
3 3PAF 1 A, B 50S ribosomal protein L7Ae 2190
4 1RA4 1 A 50S ribosomal protein L7Ae 2190
5 1SDS 2 A, B, C 50S ribosomal protein L7Ae 2190
6 2CZW 1 A 50S ribosomal protein L7Ae 53953
7 1PXW 1 A, B LSU ribosomal protein L7AE 29292
8 3HAX 3 D 50S ribosomal protein L7Ae 2261
9 4V9F 8 F 50S ribosomal protein L7Ae 2238
10 4BW0 2 B 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
11 1VQO 9 F 50S ribosomal protein L7AE 2238
12 1VQ8 9 F 50S ribosomal protein L7AE 2238
13 3LWR 3 C 50S ribosomal protein L7Ae 2261
14 1S72 8 F 50S ribosomal protein L7Ae 2238
15 1JJ2 8 F RIBOSOMAL PROTEIN L7AE 2238
16 1YHQ 8 F 50S ribosomal protein L7AE 2238
17 1VQP 9 F 50S ribosomal protein L7AE 2238
18 1VQM 9 F 50S ribosomal protein L7AE 2238
19 3CC2 6 F 50S ribosomal protein L7Ae 2238
20 1VQL 9 F 50S ribosomal protein L7AE 2238
21 1VQK 9 F 50S ribosomal protein L7AE 2238
22 3HJW 3 C 50S ribosomal protein L7Ae 2261
23 1VQN 10 F 50S ribosomal protein L7AE 2238
24 1YIJ 8 F 50S ribosomal protein L7AE 2238
25 1YI2 8 F 50S ribosomal protein L7AE 2238
26 3LWV 3 C 50S ribosomal protein L7Ae 2261
27 1VQ9 9 F 50S ribosomal protein L7AE 2238
28 2HVY 5 D 50S ribosomal protein L7Ae 2261
29 3LWP 3 C 50S ribosomal protein L7Ae 2261
30 1VQ7 9 F 50S ribosomal protein L7AE 2238
31 3CCM 6 F 50S ribosomal protein L7Ae 2238
32 1VQ5 9 F 50S ribosomal protein L7AE 2238
33 3CCJ 6 F 50S ribosomal protein L7Ae 2238
34 3CC7 6 F 50S ribosomal protein L7Ae 2238
35 1YIT 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
36 3CCE 6 F 50S ribosomal protein L7Ae 2238
37 3G6E 7 F 50S ribosomal protein L7Ae 2238
38 3CPW 8 F 50S ribosomal protein L7Ae 2238
39 3CCU 6 F 50S ribosomal protein L7Ae 2238
40 1VQ6 10 F 50S ribosomal protein L7AE 2238
41 1M90 9 H RIBOSOMAL PROTEIN L7AE 2238
42 3CCL 6 F 50S ribosomal protein L7Ae 2238
43 1YJW 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
44 1YJ9 8 F 50S ribosomal protein L7AE 2238
45 3CD6 6 F 50S ribosomal protein L7Ae 2238
46 3CCV 6 F 50S ribosomal protein L7Ae 2238
47 4C4W 2 C, G 50S RIBOSOMAL PROTEIN L7AE 2234
48 3CC4 6 F 50S ribosomal protein L7Ae 2238
49 2OTL 8 F 50S ribosomal protein L7Ae 2238
50 3G71 7 F 50S ribosomal protein L7Ae 2238
51 1FFK 7 E RIBOSOMAL PROTEIN L7AE 2238
52 1VQ4 9 F 50S ribosomal protein L7AE 2238
53 1YJN 8 F 50S ribosomal protein L7AE 2238
54 3CMA 6 F 50S ribosomal protein L7Ae 2238
55 3LWO 3 C 50S ribosomal protein L7Ae 2261
56 3CCS 6 F 50S ribosomal protein L7Ae 2238
57 3LWQ 3 C 50S ribosomal protein L7Ae 2261
58 3NVI 2 B, D 50S ribosomal protein L7Ae 2261
59 3CCQ 6 F 50S ribosomal protein L7Ae 2238
60 3I56 6 F 50S ribosomal protein L7Ae 2238
61 3CCR 6 F 50S ribosomal protein L7Ae 2238
62 2OTJ 8 F 50S ribosomal protein L7Ae 2238
63 1KQS 10 F RIBOSOMAL PROTEIN L7AE 2238
64 3OW2 8 F 50S ribosomal protein L7Ae 2238
65 3CXC 9 F RIBOSOMAL PROTEIN L7AE 2238
66 5G4U 2 C, D, G, H, K, L 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
67 1QVG 9 F 50S ribosomal protein L7Ae 2238
68 3NMU 2 C, G 50S ribosomal protein L7Ae 2261
69 3CME 6 F 50S ribosomal protein L7Ae 2238
70 2QEX 8 F 50S ribosomal protein L7Ae 2238
71 5GIP 2 C, D, M, N 50S ribosomal protein L7Ae UNP residues 3-127 2287
72 5FJ4 2 C, G 50S RIBOSOMAL PROTEIN L7AE RNA BINDING DOMAIN, UNP RESIDUES 5-119 2234
73 1KC8 8 H RIBOSOMAL PROTEIN L7AE 2238
74 1RLG 2 A, B 50S ribosomal protein L7Ae 2234
75 5G4V 2 C, D, G, H 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
76 1N8R 8 H 50S ribosomal protein L7Ae 2238
77 1Q81 9 H 50S ribosomal protein L7Ae 2238
78 1Q82 9 H 50S ribosomal protein L7Ae 2238
79 1QVF 9 F 50S ribosomal protein L7Ae 2238
80 1NJI 8 H 50S ribosomal protein L7Ae 2238
81 1K73 8 H RIBOSOMAL PROTEIN L7AE 2238
82 1K9M 8 H RIBOSOMAL PROTEIN L7AE 2238
83 1KD1 8 H RIBOSOMAL PROTEIN L7AE 2238
84 3I55 7 F 50S ribosomal protein L7Ae 2238
85 1K8A 8 H RIBOSOMAL PROTEIN L7AE 2238
86 1Q86 9 H 50S ribosomal protein L7Ae 2238
87 1M1K 8 H RIBOSOMAL PROTEIN L7AE 2238
88 3G4S 7 F 50S ribosomal protein L7Ae 2238
89 1W2B 11 F 50S RIBOSOMAL PROTEIN L7AE 2238
90 2QA4 8 F 50S ribosomal protein L7Ae 2238
91 1Q7Y 9 H 50S ribosomal protein L7Ae 2238
92 3NVK 2 E, H 50S ribosomal protein L7Ae 2261
93 3PLA 2 C, D, L 50S ribosomal protein L7Ae 2287
94 5GIN 2 C, D, L 50S ribosomal protein L7Ae 2287
95 5DCV 1 A, C 50S ribosomal protein L7Ae 53953
96 5GIO 2 C, D, L 50S ribosomal protein L7Ae UNP residues 3-127 2287
97 3ID5 3 C, G 50S ribosomal protein L7Ae 2287
98 3HAY 4 D 50S ribosomal protein L7Ae 2261
99 5JPQ 9 U, V Snu13 209285
100 5JB3 18 3 50S ribosomal protein L7Ae 50S ribosomal protein L7AE model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
101 5JBH 3 3 50S ribosomal protein uL30 50S ribosomal protein L7AE model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
102 4BY9 3 D, G, J, M 50S RIBOSOMAL PROTEIN L7AE RESIDUES 3-123 2261
103 4V4N 12 AG, B3 30S ribosomal protein L7AE SEE REMARK 999 2190
104 4V6U 20 A3, B4, BG 50S ribosomal protein L7Ae 2261
105 4ADX 16 F RPL7AE 145262