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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 279 Members. Sequence cutoff: 50% Cluster size: 97 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1XBI 1 A 50S ribosomal protein L7Ae 2190  
2 2FC3 1 A 50S ribosomal protein L7Ae 56636  
3 3PAF 1 A, B 50S ribosomal protein L7Ae 2190  
4 1RA4 1 A 50S ribosomal protein L7Ae 2190  
5 1SDS 2 A, B, C 50S ribosomal protein L7Ae 2190  
6 2CZW 1 A 50S ribosomal protein L7Ae 53953  
7 1PXW 1 A, B LSU ribosomal protein L7AE 29292  
8 3HAX 3 D 50S ribosomal protein L7Ae 2261  
9 4HUB 8 F 50S ribosomal protein L7Ae 272569  
10 4BW0 2 B 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234  
11 1VQO 9 F 50S ribosomal protein L7AE 2238  
12 1VQ8 9 F 50S ribosomal protein L7AE 2238  
13 3LWR 3 C 50S ribosomal protein L7Ae 2261  
14 1S72 8 F 50S ribosomal protein L7Ae 2238  
15 1JJ2 8 F RIBOSOMAL PROTEIN L7AE 2238  
16 1YHQ 8 F 50S ribosomal protein L7AE 2238  
17 1VQP 9 F 50S ribosomal protein L7AE 2238  
18 1VQM 9 F 50S ribosomal protein L7AE 2238  
19 3CC2 6 F 50S ribosomal protein L7Ae 2238  
20 1VQL 9 F 50S ribosomal protein L7AE 2238  
21 1VQK 9 F 50S ribosomal protein L7AE 2238  
22 3HJW 3 C 50S ribosomal protein L7Ae 2261  
23 1VQN 10 F 50S ribosomal protein L7AE 2238  
24 1YIJ 8 F 50S ribosomal protein L7AE 2238  
25 1YI2 8 F 50S ribosomal protein L7AE 2238  
26 3LWV 3 C 50S ribosomal protein L7Ae 2261  
27 1VQ9 9 F 50S ribosomal protein L7AE 2238  
28 2HVY 5 D 50S ribosomal protein L7Ae 2261  
29 3LWP 3 C 50S ribosomal protein L7Ae 2261  
30 1VQ7 9 F 50S ribosomal protein L7AE 2238  
31 3CCM 6 F 50S ribosomal protein L7Ae 2238  
32 1VQ5 9 F 50S ribosomal protein L7AE 2238  
33 3CCJ 6 F 50S ribosomal protein L7Ae 2238  
34 3CC7 6 F 50S ribosomal protein L7Ae 2238  
35 1YIT 12 F 50S RIBOSOMAL PROTEIN L7AE 2238  
36 3CCE 6 F 50S ribosomal protein L7Ae 2238  
37 3G6E 7 F 50S ribosomal protein L7Ae 2238  
38 3CPW 8 F 50S ribosomal protein L7Ae 2238  
39 3CCU 6 F 50S ribosomal protein L7Ae 2238  
40 1VQ6 10 F 50S ribosomal protein L7AE 2238  
41 1M90 9 H RIBOSOMAL PROTEIN L7AE 2238  
42 3CCL 6 F 50S ribosomal protein L7Ae 2238  
43 1YJW 12 F 50S RIBOSOMAL PROTEIN L7AE 2238  
44 1YJ9 8 F 50S ribosomal protein L7AE 2238  
45 3CD6 6 F 50S ribosomal protein L7Ae 2238  
46 3CCV 6 F 50S ribosomal protein L7Ae 2238  
47 4C4W 2 C, G 50S RIBOSOMAL PROTEIN L7AE 224325  
48 3CC4 6 F 50S ribosomal protein L7Ae 2238  
49 2OTL 8 F 50S ribosomal protein L7Ae 2238  
50 3G71 7 F 50S ribosomal protein L7Ae 2238  
51 1FFK 7 E RIBOSOMAL PROTEIN L7AE 2238  
52 1VQ4 9 F 50S ribosomal protein L7AE 2238  
53 1YJN 8 F 50S ribosomal protein L7AE 2238  
54 3CMA 6 F 50S ribosomal protein L7Ae 2238  
55 3LWO 3 C 50S ribosomal protein L7Ae 2261  
56 3CCS 6 F 50S ribosomal protein L7Ae 2238  
57 3LWQ 3 C 50S ribosomal protein L7Ae 2261  
58 3NVI 2 B, D 50S ribosomal protein L7Ae 186497  
59 3CCQ 6 F 50S ribosomal protein L7Ae 2238  
60 3I56 6 F 50S ribosomal protein L7Ae 2238  
61 3CCR 6 F 50S ribosomal protein L7Ae 2238  
62 2OTJ 8 F 50S ribosomal protein L7Ae 2238  
63 1KQS 10 F RIBOSOMAL PROTEIN L7AE 2238  
64 3OW2 8 F 50S ribosomal protein L7Ae 2238  
65 3CXC 9 F RIBOSOMAL PROTEIN L7AE 2238  
66 1QVG 9 F 50S ribosomal protein L7Ae 2238  
67 3NMU 2 C, G 50S ribosomal protein L7Ae 2261  
68 3CME 6 F 50S ribosomal protein L7Ae 2238  
69 2QEX 8 F 50S ribosomal protein L7Ae 2238  
70 1KC8 8 H RIBOSOMAL PROTEIN L7AE 2238  
71 1RLG 2 A, B 50S ribosomal protein L7Ae 2234  
72 1N8R 8 H 50S ribosomal protein L7Ae 2238  
73 1Q81 9 H 50S ribosomal protein L7Ae 2238  
74 1Q82 9 H 50S ribosomal protein L7Ae 2238  
75 1QVF 9 F 50S ribosomal protein L7Ae 2238  
76 1NJI 8 H 50S ribosomal protein L7Ae 2238  
77 1K73 8 H RIBOSOMAL PROTEIN L7AE 2238  
78 1K9M 8 H RIBOSOMAL PROTEIN L7AE 2238  
79 1KD1 8 H RIBOSOMAL PROTEIN L7AE 2238  
80 3I55 7 F 50S ribosomal protein L7Ae 2238  
81 1K8A 8 H RIBOSOMAL PROTEIN L7AE 2238  
82 1Q86 9 H 50S ribosomal protein L7Ae 2238  
83 1M1K 8 H RIBOSOMAL PROTEIN L7AE 2238  
84 3G4S 7 F 50S ribosomal protein L7Ae 2238  
85 1W2B 11 F 50S RIBOSOMAL PROTEIN L7AE 2238  
86 2QA4 8 F 50S ribosomal protein L7Ae 2238  
87 1Q7Y 9 H 50S ribosomal protein L7Ae 2238  
88 3NVK 2 E, H 50S ribosomal protein L7Ae 186497  
89 3PLA 2 C, D, L 50S ribosomal protein L7Ae 555311  
90 3ID5 3 C, G 50S ribosomal protein L7Ae 2287  
91 3HAY 4 D 50S ribosomal protein L7Ae 2261  
92 4BY9 3 D, G, J, M 50S RIBOSOMAL PROTEIN L7AE RESIDUES 3-123 2261  
93 3J43 3 3 30S ribosomal protein L7AE SEE REMARK 999 2190  
94 3J44 14 G 50S ribosomal protein L17AE SEE REMARK 999 2190  
95 3J20 20 3 50S ribosomal protein L7Ae 186497  
96 3J21 23 4, G 50S ribosomal protein L7Ae 186497  
97 4ADX 16 F RPL7AE 187420  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 547
95% 36 68 449
90% 36 68 471
70% 36 68 502
50% 36 105 320
40% 36 105 344
30% 37 402 56
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46577
95% 1 1 32715
90% 1 1 31302
70% 36 68 495
50% 36 103 330
40% 36 103 353
30% 36 103 364
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 276
95% 36 74 395
90% 36 74 419
70% 36 74 444
50% 36 74 493
40% 36 74 523
30% 36 394 62
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 274
95% 36 74 393
90% 36 74 417
70% 36 74 442
50% 36 76 476
40% 36 76 504
30% 36 78 499
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 312
95% 36 68 451
90% 36 68 474
70% 36 68 505
50% 36 70 531
40% 36 70 557
30% 36 70 562
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1531
95% 36 68 447
90% 36 68 469
70% 36 68 500
50% 36 68 556
40% 36 70 556
30% 36 71 547
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 315
95% 36 68 453
90% 36 68 476
70% 36 68 507
50% 36 70 533
40% 36 70 560
30% 36 71 549
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 326
95% 36 68 445
90% 36 68 467
70% 36 68 498
50% 36 68 553
40% 36 68 584
30% 36 106 349
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 281
95% 36 74 398
90% 36 74 422
70% 36 74 447
50% 36 76 477
40% 36 78 486
30% 36 369 73
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 280
95% 36 74 397
90% 36 74 421
70% 36 74 446
50% 36 112 286
40% 36 112 310
30% 36 112 327
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 302
95% 34 70 429
90% 34 70 449
70% 34 70 478
50% 34 70 534
40% 34 70 561
30% 34 70 563
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 282
95% 36 74 399
90% 36 74 423
70% 36 74 448
50% 36 74 495
40% 36 74 525
30% 36 74 527
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 310
95% 36 68 446
90% 36 68 468
70% 36 68 499
50% 36 68 554
40% 36 70 555
30% 36 71 546
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 317
95% 36 68 455
90% 36 68 478
70% 36 68 509
50% 36 68 560
40% 36 68 589
30% 36 68 585
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49468
95% 3 5 10959
90% 3 5 10788
70% 3 5 10213
50% 3 5 9173
40% 3 5 8374
30% 3 5 7360
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 54982
95% 1 1 38385
90% 1 1 36737
70% 3 21 2125
50% 7 30 1448
40% 7 58 696
30% 26 81 477
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 457
90% 36 68 480
70% 36 68 511
50% 36 69 546
40% 36 69 576
30% 36 69 576
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56239
95% 36 68 458
90% 36 68 481
70% 36 68 512
50% 36 105 323
40% 36 105 346
30% 36 105 357
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 316
95% 36 68 454
90% 36 68 477
70% 36 68 508
50% 36 68 559
40% 36 68 588
30% 36 104 361
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 309
95% 36 68 444
90% 36 68 466
70% 36 68 497
50% 36 68 552
40% 36 104 349
30% 37 397 61
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1516
95% 35 67 462
90% 35 67 485
70% 35 67 518
50% 35 102 332
40% 35 104 347
30% 35 104 358
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41062
95% 36 74 388
90% 36 74 413
70% 36 74 439
50% 36 74 488
40% 36 109 318
30% 36 109 332
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7493
95% 36 74 391
90% 36 74 415
70% 36 74 441
50% 36 74 490
40% 36 76 503
30% 36 77 505
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 275
95% 36 74 394
90% 36 74 418
70% 36 74 443
50% 36 74 491
40% 36 109 321
30% 36 109 335
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1542
95% 3 21 2053
90% 36 68 473
70% 36 68 504
50% 51 97 279
40% 57 106 271
30% 57 108 290
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48514
95% 1 1 33800
90% 1 7 7789
70% 3 27 1544
50% 36 74 492
40% 36 78 483
30% 36 78 501
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 277
95% 36 74 396
90% 36 74 420
70% 36 74 445
50% 36 74 494
40% 37 77 495
30% 37 78 502
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.