Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 803
95 % 36 68 636
90 % 36 68 663
70 % 36 68 705
50 % 36 174 198
40 % 36 174 217
30 % 44 506 29
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57975
95 % 1 1 40414
90 % 1 1 38488
70 % 36 68 697
50 % 36 170 205
40 % 36 170 227
30 % 36 170 233
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 403
95 % 36 74 563
90 % 36 74 591
70 % 36 74 623
50 % 36 74 672
40 % 36 74 711
30 % 43 488 35
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 401
95 % 36 74 561
90 % 36 74 589
70 % 36 74 620
50 % 36 76 651
40 % 36 76 693
30 % 36 79 665
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 451
95 % 36 68 637
90 % 36 68 665
70 % 36 68 707
50 % 36 70 729
40 % 36 70 766
30 % 36 70 765
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2128
95 % 36 68 635
90 % 36 68 661
70 % 36 68 703
50 % 36 68 754
40 % 36 72 737
30 % 36 72 736
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 453
95 % 36 68 640
90 % 36 68 667
70 % 36 68 711
50 % 36 70 730
40 % 36 70 767
30 % 36 71 749
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 462
95 % 36 68 633
90 % 36 68 659
70 % 36 68 700
50 % 36 68 751
40 % 36 68 785
30 % 36 173 226
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 410
95 % 36 74 569
90 % 36 74 596
70 % 36 74 630
50 % 36 76 654
40 % 36 78 670
30 % 43 397 57
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 407
95 % 36 74 566
90 % 36 74 594
70 % 36 74 628
50 % 36 178 191
40 % 36 178 208
30 % 36 178 221
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 434
95 % 34 70 615
90 % 34 70 641
70 % 34 70 680
50 % 34 70 731
40 % 34 70 769
30 % 34 70 767
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 412
95 % 36 74 570
90 % 36 74 597
70 % 36 74 631
50 % 36 74 678
40 % 36 74 715
30 % 36 74 715
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 449
95 % 36 68 634
90 % 36 68 660
70 % 36 68 701
50 % 36 68 752
40 % 36 70 763
30 % 36 71 746
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 455
95 % 36 68 642
90 % 36 68 669
70 % 36 68 713
50 % 36 68 759
40 % 36 68 790
30 % 36 68 788
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61284
95 % 3 5 13704
90 % 3 5 13456
70 % 3 5 12623
50 % 3 5 11286
40 % 3 5 10238
30 % 3 5 8890
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67529
95 % 1 1 46810
90 % 1 1 44529
70 % 3 21 2798
50 % 7 30 1870
40 % 7 127 292
30 % 26 150 262
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 456
95 % 36 68 643
90 % 36 68 670
70 % 36 68 716
50 % 36 69 739
40 % 36 69 779
30 % 36 69 778
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68924
95 % 36 68 644
90 % 36 68 671
70 % 36 68 717
50 % 36 171 201
40 % 36 171 224
30 % 36 171 231
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 454
95 % 36 68 641
90 % 36 68 668
70 % 36 68 712
50 % 36 68 758
40 % 36 68 789
30 % 36 167 237
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 448
95 % 36 68 632
90 % 36 68 658
70 % 36 68 699
50 % 36 68 750
40 % 36 172 221
30 % 44 497 32
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2112
95 % 36 68 630
90 % 36 68 656
70 % 36 68 696
50 % 36 169 204
40 % 36 171 223
30 % 36 171 230
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51315
95 % 36 74 552
90 % 36 74 582
70 % 36 74 615
50 % 36 74 666
40 % 36 178 205
30 % 36 178 218
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9655
95 % 36 74 556
90 % 36 74 586
70 % 36 74 619
50 % 36 74 668
40 % 36 76 691
30 % 37 78 674
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 402
95 % 36 74 562
90 % 36 74 590
70 % 36 74 621
50 % 36 74 670
40 % 37 178 207
30 % 37 178 220
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2139
95 % 3 21 2768
90 % 36 68 664
70 % 36 68 706
50 % 51 105 311
40 % 58 120 281
30 % 58 122 278
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60207
95 % 1 1 41656
90 % 1 7 9757
70 % 3 27 2078
50 % 36 74 671
40 % 36 79 658
30 % 36 79 668
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 404
95 % 36 74 564
90 % 36 74 592
70 % 36 74 626
50 % 36 74 676
40 % 37 77 681
30 % 37 78 677

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1XBI 1 A 50S ribosomal protein L7Ae 2190
2 2FC3 1 A 50S ribosomal protein L7Ae 56636
3 4NUT 1 A 13 kDa ribonucleoprotein-associated protein 4932
4 3PAF 1 A, B 50S ribosomal protein L7Ae 2190
5 1RA4 1 A 50S ribosomal protein L7Ae 2190
6 1SDS 2 A, B, C 50S ribosomal protein L7Ae 2190
7 1ZWZ 1 A, B Snu13p 4932
8 2ALE 1 A NHP2/L7aE family protein YEL026W 4932
9 2AIF 1 A ribosomal protein L7A 5807
10 2CZW 1 A 50S ribosomal protein L7Ae 53953
11 3O85 1 A, B Ribosomal protein L7Ae 5741
12 1PXW 1 A, B LSU ribosomal protein L7AE 29292
13 3HAX 3 D 50S ribosomal protein L7Ae 2261
14 4V9F 8 F 50S ribosomal protein L7Ae 2238
15 4BW0 2 B 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
16 1VQO 9 F 50S ribosomal protein L7AE 2238
17 1VQ8 9 F 50S ribosomal protein L7AE 2238
18 3LWR 3 C 50S ribosomal protein L7Ae 2261
19 1S72 8 F 50S ribosomal protein L7Ae 2238
20 1JJ2 8 F RIBOSOMAL PROTEIN L7AE 2238
21 1YHQ 8 F 50S ribosomal protein L7AE 2238
22 1VQP 9 F 50S ribosomal protein L7AE 2238
23 1VQM 9 F 50S ribosomal protein L7AE 2238
24 3CC2 6 F 50S ribosomal protein L7Ae 2238
25 1VQL 9 F 50S ribosomal protein L7AE 2238
26 1VQK 9 F 50S ribosomal protein L7AE 2238
27 3HJW 3 C 50S ribosomal protein L7Ae 2261
28 1VQN 10 F 50S ribosomal protein L7AE 2238
29 1YIJ 8 F 50S ribosomal protein L7AE 2238
30 1YI2 8 F 50S ribosomal protein L7AE 2238
31 3LWV 3 C 50S ribosomal protein L7Ae 2261
32 1VQ9 9 F 50S ribosomal protein L7AE 2238
33 2HVY 5 D 50S ribosomal protein L7Ae 2261
34 3LWP 3 C 50S ribosomal protein L7Ae 2261
35 1VQ7 9 F 50S ribosomal protein L7AE 2238
36 3CCM 6 F 50S ribosomal protein L7Ae 2238
37 1VQ5 9 F 50S ribosomal protein L7AE 2238
38 3CCJ 6 F 50S ribosomal protein L7Ae 2238
39 3CC7 6 F 50S ribosomal protein L7Ae 2238
40 1YIT 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
41 3CCE 6 F 50S ribosomal protein L7Ae 2238
42 3SIU 1 A, D NHP2-like protein 1 9606
43 3G6E 7 F 50S ribosomal protein L7Ae 2238
44 3CPW 8 F 50S ribosomal protein L7Ae 2238
45 3CCU 6 F 50S ribosomal protein L7Ae 2238
46 1VQ6 10 F 50S ribosomal protein L7AE 2238
47 2OZB 2 A, D U4/U6.U5 tri-snRNP 15.5 kDa protein 9606
48 1M90 9 H RIBOSOMAL PROTEIN L7AE 2238
49 3CCL 6 F 50S ribosomal protein L7Ae 2238
50 1YJW 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
51 1YJ9 8 F 50S ribosomal protein L7AE 2238
52 3CD6 6 F 50S ribosomal protein L7Ae 2238
53 3CCV 6 F 50S ribosomal protein L7Ae 2238
54 4C4W 2 C, G 50S RIBOSOMAL PROTEIN L7AE 2234
55 3CC4 6 F 50S ribosomal protein L7Ae 2238
56 2OTL 8 F 50S ribosomal protein L7Ae 2238
57 3G71 7 F 50S ribosomal protein L7Ae 2238
58 1FFK 7 E RIBOSOMAL PROTEIN L7AE 2238
59 1VQ4 9 F 50S ribosomal protein L7AE 2238
60 1YJN 8 F 50S ribosomal protein L7AE 2238
61 3CMA 6 F 50S ribosomal protein L7Ae 2238
62 3LWO 3 C 50S ribosomal protein L7Ae 2261
63 3CCS 6 F 50S ribosomal protein L7Ae 2238
64 3LWQ 3 C 50S ribosomal protein L7Ae 2261
65 3NVI 2 B, D 50S ribosomal protein L7Ae 2261
66 3CCQ 6 F 50S ribosomal protein L7Ae 2238
67 3I56 6 F 50S ribosomal protein L7Ae 2238
68 3CCR 6 F 50S ribosomal protein L7Ae 2238
69 2OTJ 8 F 50S ribosomal protein L7Ae 2238
70 1KQS 10 F RIBOSOMAL PROTEIN L7AE 2238
71 3OW2 8 F 50S ribosomal protein L7Ae 2238
72 3CXC 9 F RIBOSOMAL PROTEIN L7AE 2238
73 5G4U 2 C, D, G, H, K, L 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
74 1QVG 9 F 50S ribosomal protein L7Ae 2238
75 3NMU 2 C, G 50S ribosomal protein L7Ae 2261
76 3CME 6 F 50S ribosomal protein L7Ae 2238
77 2QEX 8 F 50S ribosomal protein L7Ae 2238
78 5GIP 2 C, D, M, N 50S ribosomal protein L7Ae UNP residues 3-127 2287
79 5FJ4 2 C, G 50S RIBOSOMAL PROTEIN L7AE RNA BINDING DOMAIN, UNP RESIDUES 5-119 2234
80 1KC8 8 H RIBOSOMAL PROTEIN L7AE 2238
81 1RLG 2 A, B 50S ribosomal protein L7Ae 2234
82 5G4V 2 C, D, G, H 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
83 1N8R 8 H 50S ribosomal protein L7Ae 2238
84 1Q81 9 H 50S ribosomal protein L7Ae 2238
85 1E7K 1 A, B 15.5 KD RNA BINDING PROTEIN 9606
86 1Q82 9 H 50S ribosomal protein L7Ae 2238
87 1QVF 9 F 50S ribosomal protein L7Ae 2238
88 1NJI 8 H 50S ribosomal protein L7Ae 2238
89 1K73 8 H RIBOSOMAL PROTEIN L7AE 2238
90 1K9M 8 H RIBOSOMAL PROTEIN L7AE 2238
91 1KD1 8 H RIBOSOMAL PROTEIN L7AE 2238
92 3I55 7 F 50S ribosomal protein L7Ae 2238
93 1K8A 8 H RIBOSOMAL PROTEIN L7AE 2238
94 3SIV 1 A, D, G, J NHP2-like protein 1 9606
95 1Q86 9 H 50S ribosomal protein L7Ae 2238
96 1M1K 8 H RIBOSOMAL PROTEIN L7AE 2238
97 3G4S 7 F 50S ribosomal protein L7Ae 2238
98 1W2B 11 F 50S RIBOSOMAL PROTEIN L7AE 2238
99 2QA4 8 F 50S ribosomal protein L7Ae 2238
100 1Q7Y 9 H 50S ribosomal protein L7Ae 2238
101 3NVK 2 E, H 50S ribosomal protein L7Ae 2261
102 3PLA 2 C, D, L 50S ribosomal protein L7Ae 2287
103 5GIN 2 C, D, L 50S ribosomal protein L7Ae 2287
104 5DCV 1 A, C 50S ribosomal protein L7Ae 53953
105 5GIO 2 C, D, L 50S ribosomal protein L7Ae UNP residues 3-127 2287
106 3ID5 3 C, G 50S ribosomal protein L7Ae 2287
107 3HAY 4 D 50S ribosomal protein L7Ae 2261
108 5TZS 38 e, f Snu13 4932
109 5JPQ 9 U, V Snu13 209285
110 5JB3 18 3 50S ribosomal protein L7Ae 50S ribosomal protein L7AE model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
111 5JBH 3 3 50S ribosomal protein uL30 50S ribosomal protein L7AE model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
112 3JCR 25 I hSnu13 9606
113 3JCM 7 M 13 kDa ribonucleoprotein-associated protein 4932
114 5GAN 20 K 13 kDa ribonucleoprotein-associated protein 4932
115 5GAP 11 K 13 kDa ribonucleoprotein-associated protein 4932
116 4BY9 3 D, G, J, M 50S RIBOSOMAL PROTEIN L7AE RESIDUES 3-123 2261
117 4V4N 12 AG, B3 30S ribosomal protein L7AE SEE REMARK 999 2190
118 4V6U 20 A3, B4, BG 50S ribosomal protein L7Ae 2261
119 4ADX 16 F RPL7AE 145262
120 2JNB 1 A NHP2-like protein 1 9606