Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 593
95 % 35 68 729 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 755
70 % 35 68 802
50 % 35 197 204
40 % 45 589 21
30 % 45 589 34
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47731
95 % 1 1 39619
90 % 1 1 37763
70 % 35 68 803
50 % 35 196 205
40 % 35 196 222
30 % 35 196 240
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 523
95 % 35 74 659 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 682
70 % 35 74 727
50 % 35 74 788
40 % 35 194 223
30 % 35 194 242
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 515
95 % 35 74 644 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 669
70 % 35 74 715
50 % 35 76 756
40 % 35 76 791
30 % 35 79 758
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 606
95 % 35 68 746 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 772
70 % 35 68 820
50 % 35 70 838
40 % 35 70 873
30 % 35 70 860
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2795
95 % 35 68 749 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 775
70 % 35 68 823
50 % 35 68 877
40 % 35 72 839
30 % 35 72 840
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 594
95 % 35 68 730 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 756
70 % 35 68 804
50 % 35 70 848
40 % 35 70 880
30 % 35 71 854
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 623
95 % 35 68 737 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 35 68 762
70 % 35 68 811
50 % 35 68 866
40 % 35 68 893
30 % 35 194 243
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 528
95 % 35 74 661 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 684
70 % 35 74 731
50 % 35 77 747
40 % 44 455 46
30 % 44 455 62
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 519
95 % 35 74 651 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 674
70 % 35 74 721
50 % 35 203 199
40 % 35 204 213
30 % 35 204 232
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 565
95 % 33 70 700 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 727
70 % 33 70 773
50 % 33 70 840
40 % 33 70 867
30 % 33 70 862
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 520
95 % 35 74 652 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 675
70 % 35 74 722
50 % 35 74 783
40 % 44 415 52
30 % 44 441 66
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 600
95 % 35 68 738 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 763
70 % 35 68 812
50 % 35 68 867
40 % 35 70 871
30 % 35 71 853
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 607
95 % 35 68 747 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 773
70 % 35 68 821
50 % 35 68 875
40 % 35 68 900
30 % 35 70 867
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57879
95 % 3 5 14953 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14654
70 % 3 5 13714
50 % 3 5 12144
40 % 3 5 10895
30 % 3 5 9276
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2697
95 % 3 21 3027
90 % 3 21 3076
70 % 3 21 3026
50 % 7 30 2099
40 % 7 146 286
30 % 9 150 294
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 609
95 % 35 68 731 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 757
70 % 35 68 805
50 % 35 69 850
40 % 35 69 882
30 % 35 69 870
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57878
95 % 35 68 736 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 761
70 % 35 68 810
50 % 35 189 206
40 % 35 189 228
30 % 35 189 248
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 591
95 % 35 68 727 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 754
70 % 35 68 801
50 % 35 68 861
40 % 35 184 234
30 % 35 184 252
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 605
95 % 35 68 745 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 770
70 % 35 68 818
50 % 35 68 872
40 % 35 194 224
30 % 45 579 38
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 21 2717
95 % 35 68 744 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 769
70 % 35 68 817
50 % 35 187 208
40 % 35 187 231
30 % 35 187 250
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60166
95 % 35 74 657 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 680
70 % 35 74 725
50 % 35 74 787
40 % 35 202 216
30 % 35 202 234
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 851
95 % 35 74 648 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 672
70 % 35 74 717
50 % 35 74 778
40 % 35 76 794
30 % 36 78 772
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 521
95 % 35 74 655 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 679
70 % 35 74 724
50 % 35 74 786
40 % 36 196 221
30 % 36 196 239
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2716
95 % 3 21 3045 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 753
70 % 35 68 800
50 % 51 107 387
40 % 58 128 304
30 % 72 269 156
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60163
95 % 1 1 49107
90 % 1 7 10947
70 % 3 27 2376
50 % 35 74 780
40 % 35 79 753
30 % 35 79 762
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 518
95 % 35 74 649
90 % 35 74 668
70 % 35 74 714
50 % 35 74 779
40 % 36 78 779
30 % 36 78 773

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1XBI 1 A 50S ribosomal protein L7Ae 2190
2 2FC3 1 A 50S ribosomal protein L7Ae 56636
3 4NUT 1 A 13 kDa ribonucleoprotein-associated protein 4932
4 3PAF 1 A, B 50S ribosomal protein L7Ae 2190
5 1RA4 1 A 50S ribosomal protein L7Ae 2190
6 1SDS 2 A, B, C 50S ribosomal protein L7Ae 2190
7 1ZWZ 1 A, B Snu13p 4932
8 2ALE 1 A NHP2/L7aE family protein YEL026W 4932
9 2AIF 1 A ribosomal protein L7A 5807
10 2CZW 1 A 50S ribosomal protein L7Ae 53953
11 3O85 1 A, B Ribosomal protein L7Ae 5741
12 1PXW 1 A, B LSU ribosomal protein L7AE 29292
13 5XTM 1 A, C 50S ribosomal protein L7Ae 53953
14 3HAX 3 D 50S ribosomal protein L7Ae 2261
15 4V9F 8 F 50S ribosomal protein L7Ae 2238
16 4BW0 2 B 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
17 1VQO 9 F 50S ribosomal protein L7AE 2238
18 1VQ8 9 F 50S ribosomal protein L7AE 2238
19 3LWR 3 C 50S ribosomal protein L7Ae 2261
20 1S72 8 F 50S ribosomal protein L7Ae 2238
21 1JJ2 8 F RIBOSOMAL PROTEIN L7AE 2238
22 1YHQ 8 F 50S ribosomal protein L7AE 2238
23 1VQP 9 F 50S ribosomal protein L7AE 2238
24 1VQM 9 F 50S ribosomal protein L7AE 2238
25 3CC2 6 F 50S ribosomal protein L7Ae 2238
26 1VQL 9 F 50S ribosomal protein L7AE 2238
27 1VQK 9 F 50S ribosomal protein L7AE 2238
28 3HJW 3 C 50S ribosomal protein L7Ae 2261
29 1VQN 10 F 50S ribosomal protein L7AE 2238
30 1YIJ 8 F 50S ribosomal protein L7AE 2238
31 1YI2 8 F 50S ribosomal protein L7AE 2238
32 3LWV 3 C 50S ribosomal protein L7Ae 2261
33 1VQ9 9 F 50S ribosomal protein L7AE 2238
34 2HVY 5 D 50S ribosomal protein L7Ae 2261
35 3LWP 3 C 50S ribosomal protein L7Ae 2261
36 1VQ7 9 F 50S ribosomal protein L7AE 2238
37 3CCM 6 F 50S ribosomal protein L7Ae 2238
38 1VQ5 9 F 50S ribosomal protein L7AE 2238
39 3CC7 6 F 50S ribosomal protein L7Ae 2238
40 1YIT 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
41 3CCE 6 F 50S ribosomal protein L7Ae 2238
42 3SIU 1 A, D NHP2-like protein 1 9606
43 3G6E 7 F 50S ribosomal protein L7Ae 2238
44 3CPW 8 F 50S ribosomal protein L7Ae 2238
45 3CCU 6 F 50S ribosomal protein L7Ae 2238
46 1VQ6 10 F 50S ribosomal protein L7AE 2238
47 2OZB 2 A, D U4/U6.U5 tri-snRNP 15.5 kDa protein 9606
48 1M90 9 H RIBOSOMAL PROTEIN L7AE 2238
49 3CCL 6 F 50S ribosomal protein L7Ae 2238
50 1YJW 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
51 1YJ9 8 F 50S ribosomal protein L7AE 2238
52 3CD6 6 F 50S ribosomal protein L7Ae 2238
53 3CCV 6 F 50S ribosomal protein L7Ae 2238
54 4C4W 2 C, G 50S RIBOSOMAL PROTEIN L7AE 2234
55 3CC4 6 F 50S ribosomal protein L7Ae 2238
56 2OTL 8 F 50S ribosomal protein L7Ae 2238
57 3G71 7 F 50S ribosomal protein L7Ae 2238
58 1FFK 7 E RIBOSOMAL PROTEIN L7AE 2238
59 1VQ4 9 F 50S ribosomal protein L7AE 2238
60 1YJN 8 F 50S ribosomal protein L7AE 2238
61 3CMA 6 F 50S ribosomal protein L7Ae 2238
62 3LWO 3 C 50S ribosomal protein L7Ae 2261
63 3CCS 6 F 50S ribosomal protein L7Ae 2238
64 3LWQ 3 C 50S ribosomal protein L7Ae 2261
65 3NVI 2 B, D 50S ribosomal protein L7Ae 2261
66 3CCQ 6 F 50S ribosomal protein L7Ae 2238
67 3I56 6 F 50S ribosomal protein L7Ae 2238
68 3CCR 6 F 50S ribosomal protein L7Ae 2238
69 2OTJ 8 F 50S ribosomal protein L7Ae 2238
70 1KQS 10 F RIBOSOMAL PROTEIN L7AE 2238
71 3OW2 8 F 50S ribosomal protein L7Ae 2238
72 3CXC 9 F RIBOSOMAL PROTEIN L7AE 2238
73 5G4U 2 C, D, G, H, K, L 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
74 1QVG 9 F 50S ribosomal protein L7Ae 2238
75 3NMU 2 C, G 50S ribosomal protein L7Ae 2261
76 3CME 6 F 50S ribosomal protein L7Ae 2238
77 2QEX 8 F 50S ribosomal protein L7Ae 2238
78 5GIP 2 C, D, M, N 50S ribosomal protein L7Ae UNP residues 3-127 2287
79 5FJ4 2 C, G 50S RIBOSOMAL PROTEIN L7AE RNA BINDING DOMAIN, UNP RESIDUES 5-119 2234
80 1KC8 8 H RIBOSOMAL PROTEIN L7AE 2238
81 1RLG 2 A, B 50S ribosomal protein L7Ae 2234
82 5G4V 2 C, D, G, H 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
83 1N8R 8 H 50S ribosomal protein L7Ae 2238
84 1Q81 9 H 50S ribosomal protein L7Ae 2238
85 1E7K 1 A, B 15.5 KD RNA BINDING PROTEIN 9606
86 1Q82 9 H 50S ribosomal protein L7Ae 2238
87 1QVF 9 F 50S ribosomal protein L7Ae 2238
88 1NJI 8 H 50S ribosomal protein L7Ae 2238
89 1K73 8 H RIBOSOMAL PROTEIN L7AE 2238
90 1K9M 8 H RIBOSOMAL PROTEIN L7AE 2238
91 1KD1 8 H RIBOSOMAL PROTEIN L7AE 2238
92 3I55 7 F 50S ribosomal protein L7Ae 2238
93 1K8A 8 H RIBOSOMAL PROTEIN L7AE 2238
94 3SIV 1 A, D, G, J NHP2-like protein 1 9606
95 1Q86 9 H 50S ribosomal protein L7Ae 2238
96 1M1K 8 H RIBOSOMAL PROTEIN L7AE 2238
97 3G4S 7 F 50S ribosomal protein L7Ae 2238
98 5Y7M 1 A, C 50S ribosomal protein L7Ae 53953
99 3CCJ 6 F 50S ribosomal protein L7Ae 2238
100 1W2B 11 F 50S RIBOSOMAL PROTEIN L7AE 2238
101 2QA4 8 F 50S ribosomal protein L7Ae 2238
102 1Q7Y 9 H 50S ribosomal protein L7Ae 2238
103 3NVK 2 E, H 50S ribosomal protein L7Ae 2261
104 3PLA 2 C, D, L 50S ribosomal protein L7Ae 2287
105 5GIN 2 C, D, L 50S ribosomal protein L7Ae 2287
106 5DCV 1 A, C 50S ribosomal protein L7Ae 53953
107 5GIO 2 C, D, L 50S ribosomal protein L7Ae UNP residues 3-127 2287
108 3ID5 3 C, G 50S ribosomal protein L7Ae 2287
109 3HAY 4 D 50S ribosomal protein L7Ae 2261
110 5OQL 21 V, W Snu13 209285
111 5WLC 48 SE, SF Snu13 4932
112 5O9Z 15 O NHP2-like protein 1 9606
113 5NRL 18 K 13 kDa ribonucleoprotein-associated protein 13 kDa ribonucleoprotein-associated protein 4932
114 5WYJ 6 3G, 3H 13 kDa ribonucleoprotein-associated protein 4932
115 5WYK 6 3G, 3H 13 kDa ribonucleoprotein-associated protein 4932
116 5TZS 38 e, f Snu13 4932
117 5JPQ 9 U, V Snu13 209285
118 5JB3 18 3 50S ribosomal protein L7Ae 50S ribosomal protein L7AE model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
119 5JBH 3 3 50S ribosomal protein uL30 50S ribosomal protein L7AE model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
120 3JCR 25 I hSnu13 9606
121 3JCM 7 M 13 kDa ribonucleoprotein-associated protein 4932
122 5GAN 20 K 13 kDa ribonucleoprotein-associated protein 4932
123 5GAP 11 K 13 kDa ribonucleoprotein-associated protein 4932
124 4BY9 3 D, G, J, M 50S RIBOSOMAL PROTEIN L7AE RESIDUES 3-123 2261
125 4V4N 12 AG, B3 30S ribosomal protein L7AE SEE REMARK 999 2190
126 4V6U 20 A3, B4, BG 50S ribosomal protein L7Ae 2261
127 4ADX 16 F RPL7AE 145262
128 2JNB 1 A NHP2-like protein 1 9606