Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 880
95 % 35 68 706 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 736
70 % 35 68 793
50 % 35 180 204
40 % 43 543 20
30 % 43 543 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61841
95 % 1 1 43156
90 % 1 1 40994
70 % 35 68 784
50 % 35 176 209
40 % 35 176 232
30 % 35 176 243
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 451
95 % 35 74 627 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 656
70 % 35 74 700
50 % 35 74 754
40 % 35 74 790
30 % 42 523 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 449
95 % 35 74 625 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 654
70 % 35 74 697
50 % 35 76 727
40 % 35 76 762
30 % 35 79 724
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 519
95 % 35 68 708 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 739
70 % 35 68 796
50 % 35 70 805
40 % 35 70 843
30 % 35 70 828
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2312
95 % 35 68 705 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 735
70 % 35 68 792
50 % 35 68 836
40 % 35 72 817
30 % 35 72 804
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 520
95 % 35 68 710 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 741
70 % 35 68 798
50 % 35 70 807
40 % 35 70 844
30 % 35 71 815
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 529
95 % 35 68 703 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 35 68 733
70 % 35 68 789
50 % 35 68 833
40 % 35 68 868
30 % 35 179 234
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 456
95 % 35 74 631 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 660
70 % 35 74 707
50 % 35 76 733
40 % 35 78 742
30 % 42 426 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 455
95 % 35 74 630 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 659
70 % 35 74 705
50 % 35 183 201
40 % 35 184 220
30 % 35 184 230
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 488
95 % 33 70 678 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 704
70 % 33 70 760
50 % 33 70 808
40 % 33 70 845
30 % 33 70 830
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 457
95 % 35 74 632 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 661
70 % 35 74 708
50 % 35 74 759
40 % 42 387 53
30 % 42 413 65
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 516
95 % 35 68 704 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 734
70 % 35 68 790
50 % 35 68 834
40 % 35 70 842
30 % 35 71 813
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 522
95 % 35 68 712 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 743
70 % 35 68 800
50 % 35 68 841
40 % 35 68 872
30 % 35 68 856
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65332
95 % 3 5 14706 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14433
70 % 3 5 13542
50 % 3 5 12031
40 % 3 5 10909
30 % 3 5 9473
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71840
95 % 1 1 49844
90 % 1 1 47294
70 % 3 21 3001
50 % 7 30 2001
40 % 7 134 292
30 % 26 157 267
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 523
95 % 35 68 713 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 744
70 % 35 68 801
50 % 35 69 821
40 % 35 69 856
30 % 35 69 843
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 73298
95 % 35 68 714 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 745
70 % 35 68 802
50 % 35 177 206
40 % 35 177 229
30 % 35 177 238
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 521
95 % 35 68 711 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 742
70 % 35 68 799
50 % 35 68 840
40 % 35 68 871
30 % 35 173 246
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 515
95 % 35 68 702 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 731
70 % 35 68 787
50 % 35 68 832
40 % 35 178 225
30 % 43 534 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2295
95 % 35 68 699 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 728
70 % 35 68 783
50 % 35 175 208
40 % 35 177 228
30 % 35 177 237
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54812
95 % 35 74 617 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 648
70 % 35 74 692
50 % 35 74 745
40 % 35 184 218
30 % 35 184 227
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10391
95 % 35 74 620 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 651
70 % 35 74 694
50 % 35 74 747
40 % 35 76 759
30 % 36 78 738
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 450
95 % 35 74 626 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 655
70 % 35 74 698
50 % 35 74 752
40 % 36 184 219
30 % 36 184 229
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2324
95 % 3 21 2972 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 738
70 % 35 68 795
50 % 50 105 357
40 % 57 126 286
30 % 57 128 288
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64177
95 % 1 1 44466
90 % 1 7 10490
70 % 3 27 2233
50 % 35 74 753
40 % 35 79 729
30 % 35 79 726
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 453
95 % 35 74 628
90 % 35 74 657
70 % 35 74 703
50 % 35 74 758
40 % 36 77 751
30 % 36 78 742

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1XBI 1 A 50S ribosomal protein L7Ae 2190
2 2FC3 1 A 50S ribosomal protein L7Ae 56636
3 4NUT 1 A 13 kDa ribonucleoprotein-associated protein 4932
4 3PAF 1 A, B 50S ribosomal protein L7Ae 2190
5 1RA4 1 A 50S ribosomal protein L7Ae 2190
6 1SDS 2 A, B, C 50S ribosomal protein L7Ae 2190
7 1ZWZ 1 A, B Snu13p 4932
8 2ALE 1 A NHP2/L7aE family protein YEL026W 4932
9 2AIF 1 A ribosomal protein L7A 5807
10 2CZW 1 A 50S ribosomal protein L7Ae 53953
11 3O85 1 A, B Ribosomal protein L7Ae 5741
12 1PXW 1 A, B LSU ribosomal protein L7AE 29292
13 3HAX 3 D 50S ribosomal protein L7Ae 2261
14 4V9F 8 F 50S ribosomal protein L7Ae 2238
15 4BW0 2 B 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
16 1VQO 9 F 50S ribosomal protein L7AE 2238
17 1VQ8 9 F 50S ribosomal protein L7AE 2238
18 3LWR 3 C 50S ribosomal protein L7Ae 2261
19 1S72 8 F 50S ribosomal protein L7Ae 2238
20 1JJ2 8 F RIBOSOMAL PROTEIN L7AE 2238
21 1YHQ 8 F 50S ribosomal protein L7AE 2238
22 1VQP 9 F 50S ribosomal protein L7AE 2238
23 1VQM 9 F 50S ribosomal protein L7AE 2238
24 3CC2 6 F 50S ribosomal protein L7Ae 2238
25 1VQL 9 F 50S ribosomal protein L7AE 2238
26 1VQK 9 F 50S ribosomal protein L7AE 2238
27 3HJW 3 C 50S ribosomal protein L7Ae 2261
28 1VQN 10 F 50S ribosomal protein L7AE 2238
29 1YIJ 8 F 50S ribosomal protein L7AE 2238
30 1YI2 8 F 50S ribosomal protein L7AE 2238
31 3LWV 3 C 50S ribosomal protein L7Ae 2261
32 1VQ9 9 F 50S ribosomal protein L7AE 2238
33 2HVY 5 D 50S ribosomal protein L7Ae 2261
34 3LWP 3 C 50S ribosomal protein L7Ae 2261
35 1VQ7 9 F 50S ribosomal protein L7AE 2238
36 3CCM 6 F 50S ribosomal protein L7Ae 2238
37 1VQ5 9 F 50S ribosomal protein L7AE 2238
38 3CC7 6 F 50S ribosomal protein L7Ae 2238
39 1YIT 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
40 3CCE 6 F 50S ribosomal protein L7Ae 2238
41 3SIU 1 A, D NHP2-like protein 1 9606
42 3G6E 7 F 50S ribosomal protein L7Ae 2238
43 3CPW 8 F 50S ribosomal protein L7Ae 2238
44 3CCU 6 F 50S ribosomal protein L7Ae 2238
45 1VQ6 10 F 50S ribosomal protein L7AE 2238
46 2OZB 2 A, D U4/U6.U5 tri-snRNP 15.5 kDa protein 9606
47 1M90 9 H RIBOSOMAL PROTEIN L7AE 2238
48 3CCL 6 F 50S ribosomal protein L7Ae 2238
49 1YJW 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
50 1YJ9 8 F 50S ribosomal protein L7AE 2238
51 3CD6 6 F 50S ribosomal protein L7Ae 2238
52 3CCV 6 F 50S ribosomal protein L7Ae 2238
53 4C4W 2 C, G 50S RIBOSOMAL PROTEIN L7AE 2234
54 3CC4 6 F 50S ribosomal protein L7Ae 2238
55 2OTL 8 F 50S ribosomal protein L7Ae 2238
56 3G71 7 F 50S ribosomal protein L7Ae 2238
57 1FFK 7 E RIBOSOMAL PROTEIN L7AE 2238
58 1VQ4 9 F 50S ribosomal protein L7AE 2238
59 1YJN 8 F 50S ribosomal protein L7AE 2238
60 3CMA 6 F 50S ribosomal protein L7Ae 2238
61 3LWO 3 C 50S ribosomal protein L7Ae 2261
62 3CCS 6 F 50S ribosomal protein L7Ae 2238
63 3LWQ 3 C 50S ribosomal protein L7Ae 2261
64 3NVI 2 B, D 50S ribosomal protein L7Ae 2261
65 3CCQ 6 F 50S ribosomal protein L7Ae 2238
66 3I56 6 F 50S ribosomal protein L7Ae 2238
67 3CCR 6 F 50S ribosomal protein L7Ae 2238
68 2OTJ 8 F 50S ribosomal protein L7Ae 2238
69 1KQS 10 F RIBOSOMAL PROTEIN L7AE 2238
70 3OW2 8 F 50S ribosomal protein L7Ae 2238
71 3CXC 9 F RIBOSOMAL PROTEIN L7AE 2238
72 5G4U 2 C, D, G, H, K, L 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
73 1QVG 9 F 50S ribosomal protein L7Ae 2238
74 3NMU 2 C, G 50S ribosomal protein L7Ae 2261
75 3CME 6 F 50S ribosomal protein L7Ae 2238
76 2QEX 8 F 50S ribosomal protein L7Ae 2238
77 5GIP 2 C, D, M, N 50S ribosomal protein L7Ae UNP residues 3-127 2287
78 5FJ4 2 C, G 50S RIBOSOMAL PROTEIN L7AE RNA BINDING DOMAIN, UNP RESIDUES 5-119 2234
79 1KC8 8 H RIBOSOMAL PROTEIN L7AE 2238
80 1RLG 2 A, B 50S ribosomal protein L7Ae 2234
81 5G4V 2 C, D, G, H 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
82 1N8R 8 H 50S ribosomal protein L7Ae 2238
83 1Q81 9 H 50S ribosomal protein L7Ae 2238
84 1E7K 1 A, B 15.5 KD RNA BINDING PROTEIN 9606
85 1Q82 9 H 50S ribosomal protein L7Ae 2238
86 1QVF 9 F 50S ribosomal protein L7Ae 2238
87 1NJI 8 H 50S ribosomal protein L7Ae 2238
88 1K73 8 H RIBOSOMAL PROTEIN L7AE 2238
89 1K9M 8 H RIBOSOMAL PROTEIN L7AE 2238
90 1KD1 8 H RIBOSOMAL PROTEIN L7AE 2238
91 3I55 7 F 50S ribosomal protein L7Ae 2238
92 1K8A 8 H RIBOSOMAL PROTEIN L7AE 2238
93 3SIV 1 A, D, G, J NHP2-like protein 1 9606
94 1Q86 9 H 50S ribosomal protein L7Ae 2238
95 1M1K 8 H RIBOSOMAL PROTEIN L7AE 2238
96 3G4S 7 F 50S ribosomal protein L7Ae 2238
97 3CCJ 6 F 50S ribosomal protein L7Ae 2238
98 1W2B 11 F 50S RIBOSOMAL PROTEIN L7AE 2238
99 2QA4 8 F 50S ribosomal protein L7Ae 2238
100 1Q7Y 9 H 50S ribosomal protein L7Ae 2238
101 3NVK 2 E, H 50S ribosomal protein L7Ae 2261
102 3PLA 2 C, D, L 50S ribosomal protein L7Ae 2287
103 5GIN 2 C, D, L 50S ribosomal protein L7Ae 2287
104 5DCV 1 A, C 50S ribosomal protein L7Ae 53953
105 5GIO 2 C, D, L 50S ribosomal protein L7Ae UNP residues 3-127 2287
106 3ID5 3 C, G 50S ribosomal protein L7Ae 2287
107 3HAY 4 D 50S ribosomal protein L7Ae 2261
108 5OQL 21 V, W Snu13 209285
109 5WLC 48 SE, SF Snu13 4932
110 5O9Z 15 O NHP2-like protein 1 9606
111 5NRL 18 K 13 kDa ribonucleoprotein-associated protein 13 kDa ribonucleoprotein-associated protein 4932
112 5WYJ 6 3G, 3H 13 kDa ribonucleoprotein-associated protein 4932
113 5WYK 6 3G, 3H 13 kDa ribonucleoprotein-associated protein 4932
114 5TZS 38 e, f Snu13 4932
115 5JPQ 9 U, V Snu13 209285
116 5JB3 18 3 50S ribosomal protein L7Ae 50S ribosomal protein L7AE model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
117 5JBH 3 3 50S ribosomal protein uL30 50S ribosomal protein L7AE model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
118 3JCR 25 I hSnu13 9606
119 3JCM 7 M 13 kDa ribonucleoprotein-associated protein 4932
120 5GAN 20 K 13 kDa ribonucleoprotein-associated protein 4932
121 5GAP 11 K 13 kDa ribonucleoprotein-associated protein 4932
122 4BY9 3 D, G, J, M 50S RIBOSOMAL PROTEIN L7AE RESIDUES 3-123 2261
123 4V4N 12 AG, B3 30S ribosomal protein L7AE SEE REMARK 999 2190
124 4V6U 20 A3, B4, BG 50S ribosomal protein L7Ae 2261
125 4ADX 16 F RPL7AE 145262
126 2JNB 1 A NHP2-like protein 1 9606