Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 641
95 % 35 68 781 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 812
70 % 35 68 862
50 % 35 215 204
40 % 45 647 23
30 % 45 647 40
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50309
95 % 1 1 41664
90 % 1 1 39661
70 % 35 68 863
50 % 35 214 205
40 % 35 214 224
30 % 35 214 241
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 581
95 % 35 74 717 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 741
70 % 35 74 785
50 % 35 74 838
40 % 35 212 225
30 % 35 212 243
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 572
95 % 35 74 703 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 728
70 % 35 74 774
50 % 35 76 805
40 % 35 76 836
30 % 35 79 805
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 654
95 % 35 68 797 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 829
70 % 35 68 880
50 % 35 70 886
40 % 35 70 915
30 % 35 70 906
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2980
95 % 35 68 802 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 834
70 % 35 68 883
50 % 35 68 931
40 % 35 72 887
30 % 35 72 889
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 642
95 % 35 68 782 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 813
70 % 35 68 864
50 % 35 70 896
40 % 35 70 929
30 % 35 71 901
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 669
95 % 35 68 787 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 819
70 % 35 68 869
50 % 35 68 921
40 % 35 68 949
30 % 35 212 242
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 584
95 % 35 74 718 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 744
70 % 35 74 790
50 % 35 77 796
40 % 44 496 40
30 % 44 496 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 577
95 % 35 74 710 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 734
70 % 35 74 779
50 % 35 221 203
40 % 35 222 218
30 % 35 222 235
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 615
95 % 33 70 755 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 787
70 % 33 70 829
50 % 33 70 887
40 % 33 70 916
30 % 33 70 907
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 578
95 % 35 74 711 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 735
70 % 35 74 780
50 % 35 74 830
40 % 44 451 51
30 % 44 477 65
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 647
95 % 35 68 788 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 820
70 % 35 68 870
50 % 35 68 922
40 % 35 70 919
30 % 35 71 900
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 643
95 % 35 68 798 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 830
70 % 35 68 881
50 % 35 68 929
40 % 35 68 956
30 % 35 70 913
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60829
95 % 3 5 15894 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 15549
70 % 3 5 14477
50 % 3 5 12780
40 % 3 5 11446
30 % 3 5 9741
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2887
95 % 3 21 3227 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 3 21 3288
70 % 3 21 3234
50 % 7 30 2201
40 % 7 164 283
30 % 9 168 289
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 655
95 % 35 68 783 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 814
70 % 35 68 865
50 % 35 69 899
40 % 35 69 933
30 % 35 69 918
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57257
95 % 35 68 791 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 823
70 % 35 68 874
50 % 35 207 209
40 % 35 207 229
30 % 35 207 246
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 640
95 % 35 68 780 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 811
70 % 35 68 861
50 % 35 68 915
40 % 35 202 234
30 % 35 202 250
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 652
95 % 35 68 795 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 827
70 % 35 68 858
50 % 35 68 927
40 % 35 212 226
30 % 45 636 41
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 25 2333
95 % 35 68 796 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 828
70 % 35 68 878
50 % 35 205 210
40 % 35 205 230
30 % 35 205 248
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63257
95 % 35 74 715 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 739
70 % 35 74 783
50 % 35 74 837
40 % 35 220 219
30 % 35 220 237
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 926
95 % 35 74 702 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 727
70 % 35 74 773
50 % 35 74 823
40 % 35 76 835
30 % 36 78 815
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 580
95 % 35 74 713 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 738
70 % 35 74 782
50 % 35 74 835
40 % 36 214 221
30 % 36 214 239
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2902
95 % 3 21 3240 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 810
70 % 35 68 859
50 % 51 108 412
40 % 58 133 331
30 % 72 292 155
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63255
95 % 1 1 51510
90 % 1 7 11754
70 % 3 27 2526
50 % 35 74 824
40 % 35 79 801
30 % 35 79 804
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 576
95 % 35 74 708 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 724
70 % 35 74 770
50 % 35 74 827
40 % 36 78 823
30 % 36 78 819

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1XBI 1 A 50S ribosomal protein L7Ae 2190
2 2FC3 1 A 50S ribosomal protein L7Ae 56636
3 4NUT 1 A 13 kDa ribonucleoprotein-associated protein 4932
4 3PAF 1 A, B 50S ribosomal protein L7Ae 2190
5 1RA4 1 A 50S ribosomal protein L7Ae 2190
6 1SDS 2 A, B, C 50S ribosomal protein L7Ae 2190
7 1ZWZ 1 A, B Snu13p 4932
8 2ALE 1 A NHP2/L7aE family protein YEL026W 4932
9 2AIF 1 A ribosomal protein L7A 5807
10 2CZW 1 A 50S ribosomal protein L7Ae 53953
11 3O85 1 A, B Ribosomal protein L7Ae 5741
12 1PXW 1 A, B LSU ribosomal protein L7AE 29292
13 5XTM 1 A, C 50S ribosomal protein L7Ae 53953
14 3HAX 3 D 50S ribosomal protein L7Ae 2261
15 4V9F 8 F 50S ribosomal protein L7Ae 2238
16 4BW0 2 B 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
17 1VQO 9 F 50S ribosomal protein L7AE 2238
18 1VQ8 9 F 50S ribosomal protein L7AE 2238
19 3LWR 3 C 50S ribosomal protein L7Ae 2261
20 1S72 8 F 50S ribosomal protein L7Ae 2238
21 1JJ2 8 F RIBOSOMAL PROTEIN L7AE 2238
22 1YHQ 8 F 50S ribosomal protein L7AE 2238
23 1VQP 9 F 50S ribosomal protein L7AE 2238
24 1VQM 9 F 50S ribosomal protein L7AE 2238
25 3CC2 6 F 50S ribosomal protein L7Ae 2238
26 1VQL 9 F 50S ribosomal protein L7AE 2238
27 1VQK 9 F 50S ribosomal protein L7AE 2238
28 3HJW 3 C 50S ribosomal protein L7Ae 2261
29 1VQN 10 F 50S ribosomal protein L7AE 2238
30 1YIJ 8 F 50S ribosomal protein L7AE 2238
31 1YI2 8 F 50S ribosomal protein L7AE 2238
32 3LWV 3 C 50S ribosomal protein L7Ae 2261
33 1VQ9 9 F 50S ribosomal protein L7AE 2238
34 2HVY 5 D 50S ribosomal protein L7Ae 2261
35 3LWP 3 C 50S ribosomal protein L7Ae 2261
36 1VQ7 9 F 50S ribosomal protein L7AE 2238
37 3CCM 6 F 50S ribosomal protein L7Ae 2238
38 1VQ5 9 F 50S ribosomal protein L7AE 2238
39 3CC7 6 F 50S ribosomal protein L7Ae 2238
40 1YIT 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
41 3CCE 6 F 50S ribosomal protein L7Ae 2238
42 3SIU 1 A, D NHP2-like protein 1 9606
43 3G6E 7 F 50S ribosomal protein L7Ae 2238
44 3CPW 8 F 50S ribosomal protein L7Ae 2238
45 3CCU 6 F 50S ribosomal protein L7Ae 2238
46 1VQ6 10 F 50S ribosomal protein L7AE 2238
47 2OZB 2 A, D U4/U6.U5 tri-snRNP 15.5 kDa protein 9606
48 1M90 9 H RIBOSOMAL PROTEIN L7AE 2238
49 3CCL 6 F 50S ribosomal protein L7Ae 2238
50 1YJW 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
51 1YJ9 8 F 50S ribosomal protein L7AE 2238
52 3CD6 6 F 50S ribosomal protein L7Ae 2238
53 3CCV 6 F 50S ribosomal protein L7Ae 2238
54 4C4W 2 C, G 50S RIBOSOMAL PROTEIN L7AE 2234
55 3CC4 6 F 50S ribosomal protein L7Ae 2238
56 2OTL 8 F 50S ribosomal protein L7Ae 2238
57 3G71 7 F 50S ribosomal protein L7Ae 2238
58 1FFK 7 E RIBOSOMAL PROTEIN L7AE 2238
59 1VQ4 9 F 50S ribosomal protein L7AE 2238
60 1YJN 8 F 50S ribosomal protein L7AE 2238
61 3CMA 6 F 50S ribosomal protein L7Ae 2238
62 3LWO 3 C 50S ribosomal protein L7Ae 2261
63 3CCS 6 F 50S ribosomal protein L7Ae 2238
64 3LWQ 3 C 50S ribosomal protein L7Ae 2261
65 3NVI 2 B, D 50S ribosomal protein L7Ae 2261
66 3CCQ 6 F 50S ribosomal protein L7Ae 2238
67 3I56 6 F 50S ribosomal protein L7Ae 2238
68 3CCR 6 F 50S ribosomal protein L7Ae 2238
69 2OTJ 8 F 50S ribosomal protein L7Ae 2238
70 1KQS 10 F RIBOSOMAL PROTEIN L7AE 2238
71 3OW2 8 F 50S ribosomal protein L7Ae 2238
72 3CXC 9 F RIBOSOMAL PROTEIN L7AE 2238
73 5G4U 2 C, D, G, H, K, L 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
74 1QVG 9 F 50S ribosomal protein L7Ae 2238
75 3NMU 2 C, G 50S ribosomal protein L7Ae 2261
76 3CME 6 F 50S ribosomal protein L7Ae 2238
77 2QEX 8 F 50S ribosomal protein L7Ae 2238
78 5GIP 2 C, D, M, N 50S ribosomal protein L7Ae UNP residues 3-127 2287
79 5FJ4 2 C, G 50S RIBOSOMAL PROTEIN L7AE RNA BINDING DOMAIN, UNP RESIDUES 5-119 2234
80 1KC8 8 H RIBOSOMAL PROTEIN L7AE 2238
81 1RLG 2 A, B 50S ribosomal protein L7Ae 2234
82 6HCT 2 C, D, G 50S ribosomal protein L7Ae 2234
83 5G4V 2 C, D, G, H 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
84 1N8R 8 H 50S ribosomal protein L7Ae 2238
85 1Q81 9 H 50S ribosomal protein L7Ae 2238
86 1E7K 1 A, B 15.5 KD RNA BINDING PROTEIN 9606
87 1Q82 9 H 50S ribosomal protein L7Ae 2238
88 1QVF 9 F 50S ribosomal protein L7Ae 2238
89 1NJI 8 H 50S ribosomal protein L7Ae 2238
90 1K73 8 H RIBOSOMAL PROTEIN L7AE 2238
91 1K9M 8 H RIBOSOMAL PROTEIN L7AE 2238
92 1KD1 8 H RIBOSOMAL PROTEIN L7AE 2238
93 3I55 7 F 50S ribosomal protein L7Ae 2238
94 1K8A 8 H RIBOSOMAL PROTEIN L7AE 2238
95 3SIV 1 A, D, G, J NHP2-like protein 1 9606
96 1Q86 9 H 50S ribosomal protein L7Ae 2238
97 1M1K 8 H RIBOSOMAL PROTEIN L7AE 2238
98 3G4S 7 F 50S ribosomal protein L7Ae 2238
99 5Y7M 1 A, C 50S ribosomal protein L7Ae 53953
100 3CCJ 6 F 50S ribosomal protein L7Ae 2238
101 1W2B 11 F 50S RIBOSOMAL PROTEIN L7AE 2238
102 2QA4 8 F 50S ribosomal protein L7Ae 2238
103 1Q7Y 9 H 50S ribosomal protein L7Ae 2238
104 3NVK 2 E, H 50S ribosomal protein L7Ae 2261
105 3PLA 2 C, D, L 50S ribosomal protein L7Ae 2287
106 5GIN 2 C, D, L 50S ribosomal protein L7Ae 2287
107 5DCV 1 A, C 50S ribosomal protein L7Ae 53953
108 5GIO 2 C, D, L 50S ribosomal protein L7Ae UNP residues 3-127 2287
109 3ID5 3 C, G 50S ribosomal protein L7Ae 2287
110 3HAY 4 D 50S ribosomal protein L7Ae 2261
111 6AHD 9 M NHP2-like protein 1 9606
112 6AH0 37 M NHP2-like protein 1 9606
113 5ZWM 7 M 13 kDa ribonucleoprotein-associated protein 4932
114 5ZWO 7 M 13 kDa ribonucleoprotein-associated protein 4932
115 5OQL 21 V, W Snu13 209285
116 5WLC 48 SE, SF Snu13 4932
117 5O9Z 15 O NHP2-like protein 1 9606
118 5NRL 18 K 13 kDa ribonucleoprotein-associated protein 13 kDa ribonucleoprotein-associated protein 4932
119 5WYJ 6 3G, 3H 13 kDa ribonucleoprotein-associated protein 4932
120 5WYK 6 3G, 3H 13 kDa ribonucleoprotein-associated protein 4932
121 5TZS 38 e, f Snu13 4932
122 5JPQ 9 U, V Snu13 209285
123 5JB3 18 3 50S ribosomal protein L7Ae 50S ribosomal protein L7AE model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
124 5JBH 3 3 50S ribosomal protein uL30 50S ribosomal protein L7AE model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
125 3JCR 25 I hSnu13 9606
126 3JCM 7 M 13 kDa ribonucleoprotein-associated protein 4932
127 5GAN 20 K 13 kDa ribonucleoprotein-associated protein 4932
128 5GAP 11 K 13 kDa ribonucleoprotein-associated protein 4932
129 4BY9 3 D, G, J, M 50S RIBOSOMAL PROTEIN L7AE RESIDUES 3-123 2261
130 4V4N 12 AG, B3 30S ribosomal protein L7AE SEE REMARK 999 2190
131 4V6U 20 A3, B4, BG 50S ribosomal protein L7Ae 2261
132 4ADX 16 F RPL7AE 145262
133 2JNB 1 A NHP2-like protein 1 9606