Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 903
95 % 35 68 724 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 756
70 % 35 68 803
50 % 35 190 200
40 % 43 564 20
30 % 43 564 37
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63150
95 % 1 1 44019
90 % 1 1 41769
70 % 35 68 794
50 % 35 187 202
40 % 35 187 222
30 % 35 187 232
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 465
95 % 35 74 643 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 670
70 % 35 74 716
50 % 35 74 767
40 % 35 74 806
30 % 42 541 41
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 463
95 % 35 74 641 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 668
70 % 35 74 713
50 % 35 76 743
40 % 35 76 780
30 % 35 79 740
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 532
95 % 35 68 726 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 759
70 % 35 68 806
50 % 35 70 815
40 % 35 70 857
30 % 35 70 842
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2387
95 % 35 68 722 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 755
70 % 35 68 802
50 % 35 68 849
40 % 35 72 827
30 % 35 72 817
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 534
95 % 35 68 728 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 761
70 % 35 68 808
50 % 35 70 816
40 % 35 70 858
30 % 35 71 830
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 546
95 % 35 68 720 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 35 68 753
70 % 35 68 799
50 % 35 68 846
40 % 35 68 885
30 % 35 190 227
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 470
95 % 35 74 648 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 675
70 % 35 74 719
50 % 35 76 748
40 % 35 78 759
30 % 42 437 63
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 469
95 % 35 74 646 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 674
70 % 35 74 718
50 % 35 194 198
40 % 35 195 210
30 % 35 195 222
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 502
95 % 33 70 697 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 725
70 % 33 70 768
50 % 33 70 817
40 % 33 70 859
30 % 33 70 844
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 471
95 % 35 74 649 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 676
70 % 35 74 720
50 % 35 74 771
40 % 42 398 53
30 % 42 424 66
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 530
95 % 35 68 721 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 754
70 % 35 68 800
50 % 35 68 847
40 % 35 70 856
30 % 35 71 827
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 536
95 % 35 68 730 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 763
70 % 35 68 810
50 % 35 68 854
40 % 35 68 888
30 % 35 68 870
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66696
95 % 3 5 15026 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14753
70 % 3 5 13841
50 % 3 5 12286
40 % 3 5 11138
30 % 3 5 9670
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73264
95 % 1 1 50743
90 % 1 1 48101
70 % 3 21 3082
50 % 7 30 2060
40 % 7 140 283
30 % 26 163 257
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 537
95 % 35 68 731 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 764
70 % 35 68 811
50 % 35 69 832
40 % 35 69 872
30 % 35 69 857
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 74733
95 % 35 68 732 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 765
70 % 35 68 812
50 % 35 183 205
40 % 35 183 224
30 % 35 183 238
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 535
95 % 35 68 729 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 762
70 % 35 68 809
50 % 35 68 853
40 % 35 68 887
30 % 35 179 241
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 529
95 % 35 68 719 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 751
70 % 35 68 797
50 % 35 68 845
40 % 35 187 221
30 % 43 554 39
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2369
95 % 35 68 717 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 749
70 % 35 68 793
50 % 35 181 206
40 % 35 183 223
30 % 35 183 236
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55988
95 % 35 74 632 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 662
70 % 35 74 708
50 % 35 74 759
40 % 35 194 211
30 % 35 194 223
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10641
95 % 35 74 635 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 665
70 % 35 74 710
50 % 35 74 761
40 % 35 76 775
30 % 36 78 755
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 464
95 % 35 74 642 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 669
70 % 35 74 714
50 % 35 74 765
40 % 36 190 216
30 % 36 190 228
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2400
95 % 3 21 3055 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 758
70 % 35 68 805
50 % 51 107 375
40 % 58 128 282
30 % 58 130 289
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65523
95 % 1 1 45341
90 % 1 7 10715
70 % 3 27 2302
50 % 35 74 766
40 % 35 79 745
30 % 35 79 743
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 467
95 % 35 74 644
90 % 35 74 671
70 % 35 74 717
50 % 35 74 770
40 % 36 77 769
30 % 36 78 760

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1XBI 1 A 50S ribosomal protein L7Ae 2190
2 2FC3 1 A 50S ribosomal protein L7Ae 56636
3 4NUT 1 A 13 kDa ribonucleoprotein-associated protein 4932
4 3PAF 1 A, B 50S ribosomal protein L7Ae 2190
5 1RA4 1 A 50S ribosomal protein L7Ae 2190
6 1SDS 2 A, B, C 50S ribosomal protein L7Ae 2190
7 1ZWZ 1 A, B Snu13p 4932
8 2ALE 1 A NHP2/L7aE family protein YEL026W 4932
9 2AIF 1 A ribosomal protein L7A 5807
10 2CZW 1 A 50S ribosomal protein L7Ae 53953
11 3O85 1 A, B Ribosomal protein L7Ae 5741
12 1PXW 1 A, B LSU ribosomal protein L7AE 29292
13 5XTM 1 A, C 50S ribosomal protein L7Ae 53953
14 3HAX 3 D 50S ribosomal protein L7Ae 2261
15 4V9F 8 F 50S ribosomal protein L7Ae 2238
16 4BW0 2 B 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
17 1VQO 9 F 50S ribosomal protein L7AE 2238
18 1VQ8 9 F 50S ribosomal protein L7AE 2238
19 3LWR 3 C 50S ribosomal protein L7Ae 2261
20 1S72 8 F 50S ribosomal protein L7Ae 2238
21 1JJ2 8 F RIBOSOMAL PROTEIN L7AE 2238
22 1YHQ 8 F 50S ribosomal protein L7AE 2238
23 1VQP 9 F 50S ribosomal protein L7AE 2238
24 1VQM 9 F 50S ribosomal protein L7AE 2238
25 3CC2 6 F 50S ribosomal protein L7Ae 2238
26 1VQL 9 F 50S ribosomal protein L7AE 2238
27 1VQK 9 F 50S ribosomal protein L7AE 2238
28 3HJW 3 C 50S ribosomal protein L7Ae 2261
29 1VQN 10 F 50S ribosomal protein L7AE 2238
30 1YIJ 8 F 50S ribosomal protein L7AE 2238
31 1YI2 8 F 50S ribosomal protein L7AE 2238
32 3LWV 3 C 50S ribosomal protein L7Ae 2261
33 1VQ9 9 F 50S ribosomal protein L7AE 2238
34 2HVY 5 D 50S ribosomal protein L7Ae 2261
35 3LWP 3 C 50S ribosomal protein L7Ae 2261
36 1VQ7 9 F 50S ribosomal protein L7AE 2238
37 3CCM 6 F 50S ribosomal protein L7Ae 2238
38 1VQ5 9 F 50S ribosomal protein L7AE 2238
39 3CC7 6 F 50S ribosomal protein L7Ae 2238
40 1YIT 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
41 3CCE 6 F 50S ribosomal protein L7Ae 2238
42 3SIU 1 A, D NHP2-like protein 1 9606
43 3G6E 7 F 50S ribosomal protein L7Ae 2238
44 3CPW 8 F 50S ribosomal protein L7Ae 2238
45 3CCU 6 F 50S ribosomal protein L7Ae 2238
46 1VQ6 10 F 50S ribosomal protein L7AE 2238
47 2OZB 2 A, D U4/U6.U5 tri-snRNP 15.5 kDa protein 9606
48 1M90 9 H RIBOSOMAL PROTEIN L7AE 2238
49 3CCL 6 F 50S ribosomal protein L7Ae 2238
50 1YJW 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
51 1YJ9 8 F 50S ribosomal protein L7AE 2238
52 3CD6 6 F 50S ribosomal protein L7Ae 2238
53 3CCV 6 F 50S ribosomal protein L7Ae 2238
54 4C4W 2 C, G 50S RIBOSOMAL PROTEIN L7AE 2234
55 3CC4 6 F 50S ribosomal protein L7Ae 2238
56 2OTL 8 F 50S ribosomal protein L7Ae 2238
57 3G71 7 F 50S ribosomal protein L7Ae 2238
58 1FFK 7 E RIBOSOMAL PROTEIN L7AE 2238
59 1VQ4 9 F 50S ribosomal protein L7AE 2238
60 1YJN 8 F 50S ribosomal protein L7AE 2238
61 3CMA 6 F 50S ribosomal protein L7Ae 2238
62 3LWO 3 C 50S ribosomal protein L7Ae 2261
63 3CCS 6 F 50S ribosomal protein L7Ae 2238
64 3LWQ 3 C 50S ribosomal protein L7Ae 2261
65 3NVI 2 B, D 50S ribosomal protein L7Ae 2261
66 3CCQ 6 F 50S ribosomal protein L7Ae 2238
67 3I56 6 F 50S ribosomal protein L7Ae 2238
68 3CCR 6 F 50S ribosomal protein L7Ae 2238
69 2OTJ 8 F 50S ribosomal protein L7Ae 2238
70 1KQS 10 F RIBOSOMAL PROTEIN L7AE 2238
71 3OW2 8 F 50S ribosomal protein L7Ae 2238
72 3CXC 9 F RIBOSOMAL PROTEIN L7AE 2238
73 5G4U 2 C, D, G, H, K, L 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
74 1QVG 9 F 50S ribosomal protein L7Ae 2238
75 3NMU 2 C, G 50S ribosomal protein L7Ae 2261
76 3CME 6 F 50S ribosomal protein L7Ae 2238
77 2QEX 8 F 50S ribosomal protein L7Ae 2238
78 5GIP 2 C, D, M, N 50S ribosomal protein L7Ae UNP residues 3-127 2287
79 5FJ4 2 C, G 50S RIBOSOMAL PROTEIN L7AE RNA BINDING DOMAIN, UNP RESIDUES 5-119 2234
80 1KC8 8 H RIBOSOMAL PROTEIN L7AE 2238
81 1RLG 2 A, B 50S ribosomal protein L7Ae 2234
82 5G4V 2 C, D, G, H 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
83 1N8R 8 H 50S ribosomal protein L7Ae 2238
84 1Q81 9 H 50S ribosomal protein L7Ae 2238
85 1E7K 1 A, B 15.5 KD RNA BINDING PROTEIN 9606
86 1Q82 9 H 50S ribosomal protein L7Ae 2238
87 1QVF 9 F 50S ribosomal protein L7Ae 2238
88 1NJI 8 H 50S ribosomal protein L7Ae 2238
89 1K73 8 H RIBOSOMAL PROTEIN L7AE 2238
90 1K9M 8 H RIBOSOMAL PROTEIN L7AE 2238
91 1KD1 8 H RIBOSOMAL PROTEIN L7AE 2238
92 3I55 7 F 50S ribosomal protein L7Ae 2238
93 1K8A 8 H RIBOSOMAL PROTEIN L7AE 2238
94 3SIV 1 A, D, G, J NHP2-like protein 1 9606
95 1Q86 9 H 50S ribosomal protein L7Ae 2238
96 1M1K 8 H RIBOSOMAL PROTEIN L7AE 2238
97 3G4S 7 F 50S ribosomal protein L7Ae 2238
98 5Y7M 1 A, C 50S ribosomal protein L7Ae 53953
99 3CCJ 6 F 50S ribosomal protein L7Ae 2238
100 1W2B 11 F 50S RIBOSOMAL PROTEIN L7AE 2238
101 2QA4 8 F 50S ribosomal protein L7Ae 2238
102 1Q7Y 9 H 50S ribosomal protein L7Ae 2238
103 3NVK 2 E, H 50S ribosomal protein L7Ae 2261
104 3PLA 2 C, D, L 50S ribosomal protein L7Ae 2287
105 5GIN 2 C, D, L 50S ribosomal protein L7Ae 2287
106 5DCV 1 A, C 50S ribosomal protein L7Ae 53953
107 5GIO 2 C, D, L 50S ribosomal protein L7Ae UNP residues 3-127 2287
108 3ID5 3 C, G 50S ribosomal protein L7Ae 2287
109 3HAY 4 D 50S ribosomal protein L7Ae 2261
110 5OQL 21 V, W Snu13 209285
111 5WLC 48 SE, SF Snu13 4932
112 5O9Z 15 O NHP2-like protein 1 9606
113 5NRL 18 K 13 kDa ribonucleoprotein-associated protein 13 kDa ribonucleoprotein-associated protein 4932
114 5WYJ 6 3G, 3H 13 kDa ribonucleoprotein-associated protein 4932
115 5WYK 6 3G, 3H 13 kDa ribonucleoprotein-associated protein 4932
116 5TZS 38 e, f Snu13 4932
117 5JPQ 9 U, V Snu13 209285
118 5JB3 18 3 50S ribosomal protein L7Ae 50S ribosomal protein L7AE model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
119 5JBH 3 3 50S ribosomal protein uL30 50S ribosomal protein L7AE model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
120 3JCR 25 I hSnu13 9606
121 3JCM 7 M 13 kDa ribonucleoprotein-associated protein 4932
122 5GAN 20 K 13 kDa ribonucleoprotein-associated protein 4932
123 5GAP 11 K 13 kDa ribonucleoprotein-associated protein 4932
124 4BY9 3 D, G, J, M 50S RIBOSOMAL PROTEIN L7AE RESIDUES 3-123 2261
125 4V4N 12 AG, B3 30S ribosomal protein L7AE SEE REMARK 999 2190
126 4V6U 20 A3, B4, BG 50S ribosomal protein L7Ae 2261
127 4ADX 16 F RPL7AE 145262
128 2JNB 1 A NHP2-like protein 1 9606