Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 762
95 % 36 68 546
90 % 36 68 576
70 % 36 68 626
50 % 36 146 222
40 % 36 146 248
30 % 44 446 35
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55969
95 % 1 1 39035
90 % 1 1 37194
70 % 36 68 619
50 % 36 142 230
40 % 36 142 259
30 % 36 142 267
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 477
90 % 36 74 506
70 % 36 74 550
50 % 36 74 636
40 % 36 74 683
30 % 43 435 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 319
95 % 36 74 475
90 % 36 74 504
70 % 36 74 547
50 % 36 76 617
40 % 36 76 658
30 % 36 78 646
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 367
95 % 36 68 548
90 % 36 68 578
70 % 36 68 629
50 % 36 70 690
40 % 36 70 736
30 % 36 70 739
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2007
95 % 36 68 545
90 % 36 68 574
70 % 36 68 625
50 % 36 68 714
40 % 36 70 733
30 % 36 71 722
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 369
95 % 36 68 550
90 % 36 68 580
70 % 36 68 632
50 % 36 70 691
40 % 36 70 737
30 % 36 71 725
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 380
95 % 36 68 543
90 % 36 68 572
70 % 36 68 623
50 % 36 68 712
40 % 36 68 751
30 % 36 145 260
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 327
95 % 36 74 482
90 % 36 74 512
70 % 36 74 557
50 % 36 76 621
40 % 36 78 635
30 % 43 372 55
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 325
95 % 36 74 480
90 % 36 74 510
70 % 36 74 555
50 % 36 150 216
40 % 36 150 239
30 % 36 150 251
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 349
95 % 34 70 521
90 % 34 70 549
70 % 34 70 600
50 % 34 70 692
40 % 34 70 738
30 % 34 70 740
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 328
95 % 36 74 483
90 % 36 74 513
70 % 36 74 558
50 % 36 74 641
40 % 36 74 688
30 % 36 74 691
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 364
95 % 36 68 544
90 % 36 68 573
70 % 36 68 624
50 % 36 68 713
40 % 36 70 731
30 % 36 71 721
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 371
95 % 36 68 552
90 % 36 68 582
70 % 36 68 634
50 % 36 68 718
40 % 36 68 755
30 % 36 68 759
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59195
95 % 3 5 13203
90 % 3 5 12963
70 % 3 5 12196
50 % 3 5 10910
40 % 3 5 9928
30 % 3 5 8632
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65308
95 % 1 1 45290
90 % 1 1 43135
70 % 3 21 2657
50 % 7 30 1787
40 % 7 99 369
30 % 26 122 312
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 372
95 % 36 68 553
90 % 36 68 583
70 % 36 68 635
50 % 36 69 703
40 % 36 69 745
30 % 36 69 751
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66670
95 % 36 68 555
90 % 36 68 585
70 % 36 68 636
50 % 36 143 224
40 % 36 143 252
30 % 36 143 262
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 370
95 % 36 68 551
90 % 36 68 581
70 % 36 68 633
50 % 36 68 717
40 % 36 68 754
30 % 36 140 273
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 363
95 % 36 68 542
90 % 36 68 571
70 % 36 68 622
50 % 36 68 711
40 % 36 145 249
30 % 44 441 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1984
95 % 36 68 540
90 % 36 68 568
70 % 36 68 618
50 % 36 141 229
40 % 36 143 251
30 % 36 143 261
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49495
95 % 36 74 468
90 % 36 74 498
70 % 36 74 543
50 % 36 74 630
40 % 36 150 236
30 % 36 150 249
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9249
95 % 36 74 471
90 % 36 74 501
70 % 36 74 546
50 % 36 74 632
40 % 36 76 657
30 % 36 77 656
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 320
95 % 36 74 476
90 % 36 74 505
70 % 36 74 548
50 % 36 74 634
40 % 37 151 235
30 % 37 151 248
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2016
95 % 3 21 2610
90 % 36 68 577
70 % 36 68 627
50 % 51 101 321
40 % 58 115 285
30 % 58 117 296
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58143
95 % 1 1 40249
90 % 1 7 9396
70 % 3 27 1957
50 % 36 74 635
40 % 36 79 625
30 % 36 79 636
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 322
95 % 36 74 478
90 % 36 74 508
70 % 36 74 553
50 % 36 74 639
40 % 37 77 647
30 % 37 78 649

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1XBI 1 A 50S ribosomal protein L7Ae 2190
2 2FC3 1 A 50S ribosomal protein L7Ae 56636
3 4NUT 1 A 13 kDa ribonucleoprotein-associated protein 4932
4 3PAF 1 A, B 50S ribosomal protein L7Ae 2190
5 1RA4 1 A 50S ribosomal protein L7Ae 2190
6 1SDS 2 A, B, C 50S ribosomal protein L7Ae 2190
7 1ZWZ 1 A, B Snu13p 4932
8 2ALE 1 A NHP2/L7aE family protein YEL026W 4932
9 2AIF 1 A ribosomal protein L7A 5807
10 2CZW 1 A 50S ribosomal protein L7Ae 53953
11 3O85 1 A, B Ribosomal protein L7Ae 5741
12 1PXW 1 A, B LSU ribosomal protein L7AE 29292
13 3HAX 3 D 50S ribosomal protein L7Ae 2261
14 4V9F 8 F 50S ribosomal protein L7Ae 2238
15 4BW0 2 B 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
16 1VQO 9 F 50S ribosomal protein L7AE 2238
17 1VQ8 9 F 50S ribosomal protein L7AE 2238
18 3LWR 3 C 50S ribosomal protein L7Ae 2261
19 1S72 8 F 50S ribosomal protein L7Ae 2238
20 1JJ2 8 F RIBOSOMAL PROTEIN L7AE 2238
21 1YHQ 8 F 50S ribosomal protein L7AE 2238
22 1VQP 9 F 50S ribosomal protein L7AE 2238
23 1VQM 9 F 50S ribosomal protein L7AE 2238
24 3CC2 6 F 50S ribosomal protein L7Ae 2238
25 1VQL 9 F 50S ribosomal protein L7AE 2238
26 1VQK 9 F 50S ribosomal protein L7AE 2238
27 3HJW 3 C 50S ribosomal protein L7Ae 2261
28 1VQN 10 F 50S ribosomal protein L7AE 2238
29 1YIJ 8 F 50S ribosomal protein L7AE 2238
30 1YI2 8 F 50S ribosomal protein L7AE 2238
31 3LWV 3 C 50S ribosomal protein L7Ae 2261
32 1VQ9 9 F 50S ribosomal protein L7AE 2238
33 2HVY 5 D 50S ribosomal protein L7Ae 2261
34 3LWP 3 C 50S ribosomal protein L7Ae 2261
35 1VQ7 9 F 50S ribosomal protein L7AE 2238
36 3CCM 6 F 50S ribosomal protein L7Ae 2238
37 1VQ5 9 F 50S ribosomal protein L7AE 2238
38 3CCJ 6 F 50S ribosomal protein L7Ae 2238
39 3CC7 6 F 50S ribosomal protein L7Ae 2238
40 1YIT 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
41 3CCE 6 F 50S ribosomal protein L7Ae 2238
42 3SIU 1 A, D NHP2-like protein 1 9606
43 3G6E 7 F 50S ribosomal protein L7Ae 2238
44 3CPW 8 F 50S ribosomal protein L7Ae 2238
45 3CCU 6 F 50S ribosomal protein L7Ae 2238
46 1VQ6 10 F 50S ribosomal protein L7AE 2238
47 2OZB 2 A, D U4/U6.U5 tri-snRNP 15.5 kDa protein 9606
48 1M90 9 H RIBOSOMAL PROTEIN L7AE 2238
49 3CCL 6 F 50S ribosomal protein L7Ae 2238
50 1YJW 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
51 1YJ9 8 F 50S ribosomal protein L7AE 2238
52 3CD6 6 F 50S ribosomal protein L7Ae 2238
53 3CCV 6 F 50S ribosomal protein L7Ae 2238
54 4C4W 2 C, G 50S RIBOSOMAL PROTEIN L7AE 2234
55 3CC4 6 F 50S ribosomal protein L7Ae 2238
56 2OTL 8 F 50S ribosomal protein L7Ae 2238
57 3G71 7 F 50S ribosomal protein L7Ae 2238
58 1FFK 7 E RIBOSOMAL PROTEIN L7AE 2238
59 1VQ4 9 F 50S ribosomal protein L7AE 2238
60 1YJN 8 F 50S ribosomal protein L7AE 2238
61 3CMA 6 F 50S ribosomal protein L7Ae 2238
62 3LWO 3 C 50S ribosomal protein L7Ae 2261
63 3CCS 6 F 50S ribosomal protein L7Ae 2238
64 3LWQ 3 C 50S ribosomal protein L7Ae 2261
65 3NVI 2 B, D 50S ribosomal protein L7Ae 2261
66 3CCQ 6 F 50S ribosomal protein L7Ae 2238
67 3I56 6 F 50S ribosomal protein L7Ae 2238
68 3CCR 6 F 50S ribosomal protein L7Ae 2238
69 2OTJ 8 F 50S ribosomal protein L7Ae 2238
70 1KQS 10 F RIBOSOMAL PROTEIN L7AE 2238
71 3OW2 8 F 50S ribosomal protein L7Ae 2238
72 3CXC 9 F RIBOSOMAL PROTEIN L7AE 2238
73 1QVG 9 F 50S ribosomal protein L7Ae 2238
74 3NMU 2 C, G 50S ribosomal protein L7Ae 2261
75 3CME 6 F 50S ribosomal protein L7Ae 2238
76 2QEX 8 F 50S ribosomal protein L7Ae 2238
77 5GIP 2 C, D, M, N 50S ribosomal protein L7Ae UNP residues 3-127 2287
78 5FJ4 2 C, G 50S RIBOSOMAL PROTEIN L7AE RNA BINDING DOMAIN, UNP RESIDUES 5-119 2234
79 1KC8 8 H RIBOSOMAL PROTEIN L7AE 2238
80 1RLG 2 A, B 50S ribosomal protein L7Ae 2234
81 1N8R 8 H 50S ribosomal protein L7Ae 2238
82 1Q81 9 H 50S ribosomal protein L7Ae 2238
83 1E7K 1 A, B 15.5 KD RNA BINDING PROTEIN 9606
84 1Q82 9 H 50S ribosomal protein L7Ae 2238
85 1QVF 9 F 50S ribosomal protein L7Ae 2238
86 1NJI 8 H 50S ribosomal protein L7Ae 2238
87 1K73 8 H RIBOSOMAL PROTEIN L7AE 2238
88 1K9M 8 H RIBOSOMAL PROTEIN L7AE 2238
89 1KD1 8 H RIBOSOMAL PROTEIN L7AE 2238
90 3I55 7 F 50S ribosomal protein L7Ae 2238
91 1K8A 8 H RIBOSOMAL PROTEIN L7AE 2238
92 3SIV 1 A, D, G, J NHP2-like protein 1 9606
93 1Q86 9 H 50S ribosomal protein L7Ae 2238
94 1M1K 8 H RIBOSOMAL PROTEIN L7AE 2238
95 3G4S 7 F 50S ribosomal protein L7Ae 2238
96 1W2B 11 F 50S RIBOSOMAL PROTEIN L7AE 2238
97 2QA4 8 F 50S ribosomal protein L7Ae 2238
98 1Q7Y 9 H 50S ribosomal protein L7Ae 2238
99 3NVK 2 E, H 50S ribosomal protein L7Ae 2261
100 3PLA 2 C, D, L 50S ribosomal protein L7Ae 2287
101 5GIN 2 C, D, L 50S ribosomal protein L7Ae 2287
102 5DCV 1 A, C 50S ribosomal protein L7Ae 53953
103 5GIO 2 C, D, L 50S ribosomal protein L7Ae UNP residues 3-127 2287
104 3ID5 3 C, G 50S ribosomal protein L7Ae 2287
105 3HAY 4 D 50S ribosomal protein L7Ae 2261
106 5JPQ 9 U, V Snu13 209285
107 3JCR 25 I hSnu13 9606
108 3JCM 7 M 13 kDa ribonucleoprotein-associated protein 4932
109 5GAN 20 K 13 kDa ribonucleoprotein-associated protein 4932
110 5GAP 11 K 13 kDa ribonucleoprotein-associated protein 4932
111 4BY9 3 D, G, J, M 50S RIBOSOMAL PROTEIN L7AE RESIDUES 3-123 2261
112 4V4N 12 AG, B3 30S ribosomal protein L7AE SEE REMARK 999 2190
113 4V6U 20 A3, B4, BG 50S ribosomal protein L7Ae 2261
114 4ADX 16 F RPL7AE 145262
115 2LBW 1 A H/ACA ribonucleoprotein complex subunit 2 SEQUENCE DATABASE RESIDUES 36-156 4932
116 2LBX 1 A H/ACA ribonucleoprotein complex subunit 2 sequence database residues 36-156 4932
117 2JNB 1 A NHP2-like protein 1 9606