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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 308 Members. Sequence cutoff: 30% Cluster size: 107 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1XBI 1 A 50S ribosomal protein L7Ae 2190  
2 2FC3 1 A 50S ribosomal protein L7Ae 56636  
3 4NUT 1 A 13 kDa ribonucleoprotein-associated protein 559292  
4 3PAF 1 A, B 50S ribosomal protein L7Ae 2190  
5 1RA4 1 A 50S ribosomal protein L7Ae 2190  
6 1SDS 2 A, B, C 50S ribosomal protein L7Ae 2190  
7 1ZWZ 1 A, B Snu13p 4932  
8 2ALE 1 A NHP2/L7aE family protein YEL026W 4932  
9 2AIF 1 A ribosomal protein L7A 5807  
10 2CZW 1 A 50S ribosomal protein L7Ae 53953  
11 3O85 1 A, B Ribosomal protein L7Ae 184922  
12 1PXW 1 A, B LSU ribosomal protein L7AE 29292  
13 3HAX 3 D 50S ribosomal protein L7Ae 2261  
14 4V9F 8 F 50S ribosomal protein L7Ae 272569  
15 4BW0 2 B 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234  
16 1VQO 9 F 50S ribosomal protein L7AE 2238  
17 1VQ8 9 F 50S ribosomal protein L7AE 2238  
18 3LWR 3 C 50S ribosomal protein L7Ae 2261  
19 1S72 8 F 50S ribosomal protein L7Ae 2238  
20 1JJ2 8 F RIBOSOMAL PROTEIN L7AE 2238  
21 1YHQ 8 F 50S ribosomal protein L7AE 2238  
22 1VQP 9 F 50S ribosomal protein L7AE 2238  
23 1VQM 9 F 50S ribosomal protein L7AE 2238  
24 3CC2 6 F 50S ribosomal protein L7Ae 2238  
25 1VQL 9 F 50S ribosomal protein L7AE 2238  
26 1VQK 9 F 50S ribosomal protein L7AE 2238  
27 3HJW 3 C 50S ribosomal protein L7Ae 2261  
28 1VQN 10 F 50S ribosomal protein L7AE 2238  
29 1YIJ 8 F 50S ribosomal protein L7AE 2238  
30 1YI2 8 F 50S ribosomal protein L7AE 2238  
31 3LWV 3 C 50S ribosomal protein L7Ae 2261  
32 1VQ9 9 F 50S ribosomal protein L7AE 2238  
33 2HVY 5 D 50S ribosomal protein L7Ae 2261  
34 3LWP 3 C 50S ribosomal protein L7Ae 2261  
35 1VQ7 9 F 50S ribosomal protein L7AE 2238  
36 3CCM 6 F 50S ribosomal protein L7Ae 272569  
37 1VQ5 9 F 50S ribosomal protein L7AE 2238  
38 3CCJ 6 F 50S ribosomal protein L7Ae 272569  
39 3CC7 6 F 50S ribosomal protein L7Ae 2238  
40 1YIT 12 F 50S RIBOSOMAL PROTEIN L7AE 2238  
41 3CCE 6 F 50S ribosomal protein L7Ae 272569  
42 3SIU 1 A, D NHP2-like protein 1 9606  
43 3G6E 7 F 50S ribosomal protein L7Ae 2238  
44 3CPW 8 F 50S ribosomal protein L7Ae 2238  
45 3CCU 6 F 50S ribosomal protein L7Ae 272569  
46 1VQ6 10 F 50S ribosomal protein L7AE 2238  
47 2OZB 2 A, D U4/U6.U5 tri-snRNP 15.5 kDa protein 9606  
48 1M90 9 H RIBOSOMAL PROTEIN L7AE 2238  
49 3CCL 6 F 50S ribosomal protein L7Ae 272569  
50 1YJW 12 F 50S RIBOSOMAL PROTEIN L7AE 2238  
51 1YJ9 8 F 50S ribosomal protein L7AE 2238  
52 3CD6 6 F 50S ribosomal protein L7Ae 272569  
53 3CCV 6 F 50S ribosomal protein L7Ae 272569  
54 4C4W 2 C, G 50S RIBOSOMAL PROTEIN L7AE 224325  
55 3CC4 6 F 50S ribosomal protein L7Ae 272569  
56 2OTL 8 F 50S ribosomal protein L7Ae 2238  
57 3G71 7 F 50S ribosomal protein L7Ae 2238  
58 1FFK 7 E RIBOSOMAL PROTEIN L7AE 2238  
59 1VQ4 9 F 50S ribosomal protein L7AE 2238  
60 1YJN 8 F 50S ribosomal protein L7AE 2238  
61 3CMA 6 F 50S ribosomal protein L7Ae 2238  
62 3LWO 3 C 50S ribosomal protein L7Ae 2261  
63 3CCS 6 F 50S ribosomal protein L7Ae 272569  
64 3LWQ 3 C 50S ribosomal protein L7Ae 2261  
65 3NVI 2 B, D 50S ribosomal protein L7Ae 186497  
66 3CCQ 6 F 50S ribosomal protein L7Ae 272569  
67 3I56 6 F 50S ribosomal protein L7Ae 2238  
68 3CCR 6 F 50S ribosomal protein L7Ae 272569  
69 2OTJ 8 F 50S ribosomal protein L7Ae 2238  
70 1KQS 10 F RIBOSOMAL PROTEIN L7AE 2238  
71 3OW2 8 F 50S ribosomal protein L7Ae 2238  
72 3CXC 9 F RIBOSOMAL PROTEIN L7AE 2238  
73 1QVG 9 F 50S ribosomal protein L7Ae 2238  
74 3NMU 2 C, G 50S ribosomal protein L7Ae 2261  
75 3CME 6 F 50S ribosomal protein L7Ae 2238  
76 2QEX 8 F 50S ribosomal protein L7Ae 2238  
77 1KC8 8 H RIBOSOMAL PROTEIN L7AE 2238  
78 1RLG 2 A, B 50S ribosomal protein L7Ae 2234  
79 1N8R 8 H 50S ribosomal protein L7Ae 2238  
80 1Q81 9 H 50S ribosomal protein L7Ae 2238  
81 1E7K 1 A, B 15.5 KD RNA BINDING PROTEIN 9606  
82 1Q82 9 H 50S ribosomal protein L7Ae 2238  
83 1QVF 9 F 50S ribosomal protein L7Ae 2238  
84 1NJI 8 H 50S ribosomal protein L7Ae 2238  
85 1K73 8 H RIBOSOMAL PROTEIN L7AE 2238  
86 1K9M 8 H RIBOSOMAL PROTEIN L7AE 2238  
87 1KD1 8 H RIBOSOMAL PROTEIN L7AE 2238  
88 3I55 7 F 50S ribosomal protein L7Ae 2238  
89 1K8A 8 H RIBOSOMAL PROTEIN L7AE 2238  
90 3SIV 1 A, D, G, J NHP2-like protein 1 9606  
91 1Q86 9 H 50S ribosomal protein L7Ae 2238  
92 1M1K 8 H RIBOSOMAL PROTEIN L7AE 2238  
93 3G4S 7 F 50S ribosomal protein L7Ae 2238  
94 1W2B 11 F 50S RIBOSOMAL PROTEIN L7AE 2238  
95 2QA4 8 F 50S ribosomal protein L7Ae 2238  
96 1Q7Y 9 H 50S ribosomal protein L7Ae 2238  
97 3NVK 2 E, H 50S ribosomal protein L7Ae 186497  
98 3PLA 2 C, D, L 50S ribosomal protein L7Ae 555311  
99 3ID5 3 C, G 50S ribosomal protein L7Ae 2287  
100 3HAY 4 D 50S ribosomal protein L7Ae 2261  
101 4BY9 3 D, G, J, M 50S RIBOSOMAL PROTEIN L7AE RESIDUES 3-123 2261  
102 4V4N 12 AG, B3 30S ribosomal protein L7AE SEE REMARK 999 2190  
103 4V6U 20 A3, B4, BG 50S ribosomal protein L7Ae 186497  
104 4ADX 16 F RPL7AE 187420  
105 2LBW 1 A H/ACA ribonucleoprotein complex subunit 2 SEQUENCE DATABASE RESIDUES 36-156 4932  
106 2LBX 1 A H/ACA ribonucleoprotein complex subunit 2 sequence database residues 36-156 4932  
107 2JNB 1 A NHP2-like protein 1 9606  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 670
95% 36 68 475
90% 36 68 498
70% 36 68 538
50% 36 122 239
40% 36 122 263
30% 41 343 47
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49544
95% 1 1 34729
90% 1 1 33184
70% 36 68 531
50% 36 120 245
40% 36 120 269
30% 36 120 287
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 417
90% 36 74 442
70% 36 74 473
50% 36 74 523
40% 36 74 564
30% 40 335 51
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 415
90% 36 74 440
70% 36 74 470
50% 36 76 499
40% 36 76 539
30% 36 78 523
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 477
90% 36 68 501
70% 36 68 541
50% 36 70 581
40% 36 70 616
30% 36 70 617
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1716
95% 36 68 473
90% 36 68 496
70% 36 68 536
50% 36 68 616
40% 36 70 615
30% 36 71 594
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 329
95% 36 68 479
90% 36 68 503
70% 36 68 543
50% 36 70 584
40% 36 70 620
30% 36 71 597
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 338
95% 36 68 471
90% 36 68 494
70% 36 68 534
50% 36 68 613
40% 36 68 647
30% 36 123 280
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 420
90% 36 74 445
70% 36 74 477
50% 36 76 500
40% 36 78 520
30% 40 293 68
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 419
90% 36 74 444
70% 36 74 476
50% 36 129 221
40% 36 129 247
30% 36 129 263
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 314
95% 34 70 456
90% 34 70 477
70% 34 70 513
50% 34 70 585
40% 34 70 621
30% 34 70 619
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 294
95% 36 74 421
90% 36 74 446
70% 36 74 478
50% 36 74 526
40% 36 74 566
30% 36 74 560
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 472
90% 36 68 495
70% 36 68 535
50% 36 68 614
40% 36 70 614
30% 36 71 593
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 481
90% 36 68 505
70% 36 68 545
50% 36 68 620
40% 36 68 652
30% 36 68 647
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52539
95% 3 5 11587
90% 3 5 11397
70% 3 5 10780
50% 3 5 9682
40% 3 5 8839
30% 3 5 7731
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58247
95% 1 1 40593
90% 1 1 38787
70% 3 21 2318
50% 7 30 1577
40% 7 78 410
30% 26 101 335
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 333
95% 36 68 483
90% 36 68 507
70% 36 68 547
50% 36 69 603
40% 36 69 639
30% 36 69 634
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59545
95% 36 68 484
90% 36 68 508
70% 36 68 549
50% 36 122 240
40% 36 122 264
30% 36 122 282
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 480
90% 36 68 504
70% 36 68 544
50% 36 68 619
40% 36 68 651
30% 36 121 284
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 470
90% 36 68 493
70% 36 68 533
50% 36 68 611
40% 36 121 267
30% 41 338 50
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1699
95% 36 68 468
90% 36 68 491
70% 36 68 530
50% 36 120 244
40% 36 122 262
30% 36 122 281
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43724
95% 36 74 409
90% 36 74 434
70% 36 74 466
50% 36 74 516
40% 36 126 254
30% 36 126 270
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8034
95% 36 74 413
90% 36 74 438
70% 36 74 469
50% 36 74 518
40% 36 76 537
30% 36 77 530
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 416
90% 36 74 441
70% 36 74 471
50% 36 74 521
40% 36 127 253
30% 36 127 269
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1727
95% 3 21 2266
90% 36 68 500
70% 36 68 540
50% 51 95 310
40% 58 105 292
30% 58 107 308
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51553
95% 1 1 35854
90% 1 7 8244
70% 3 27 1705
50% 36 74 522
40% 36 79 507
30% 36 79 515
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 418
90% 36 74 443
70% 36 74 474
50% 36 74 525
40% 37 77 530
30% 37 78 525
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.