Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 742
95 % 36 68 527
90 % 36 68 555
70 % 36 68 609
50 % 36 141 223
40 % 36 141 254
30 % 44 428 34
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54386
95 % 1 1 37981
90 % 1 1 36183
70 % 36 68 603
50 % 36 136 236
40 % 36 136 263
30 % 36 136 275
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 462
90 % 36 74 489
70 % 36 74 534
50 % 36 74 621
40 % 36 74 664
30 % 43 417 41
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 460
90 % 36 74 487
70 % 36 74 531
50 % 36 76 590
40 % 36 76 640
30 % 36 78 615
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 529
90 % 36 68 558
70 % 36 68 611
50 % 36 70 673
40 % 36 70 715
30 % 36 70 717
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1928
95 % 36 68 526
90 % 36 68 554
70 % 36 68 608
50 % 36 68 702
40 % 36 70 712
30 % 36 71 699
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 356
95 % 36 68 530
90 % 36 68 559
70 % 36 68 612
50 % 36 70 675
40 % 36 70 717
30 % 36 71 702
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 365
95 % 36 68 524
90 % 36 68 552
70 % 36 68 606
50 % 36 68 699
40 % 36 68 733
30 % 36 140 266
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 316
95 % 36 74 468
90 % 36 74 496
70 % 36 74 541
50 % 36 76 592
40 % 36 78 613
30 % 43 359 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 314
95 % 36 74 466
90 % 36 74 494
70 % 36 74 539
50 % 36 145 214
40 % 36 145 245
30 % 36 145 256
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 341
95 % 34 70 507
90 % 34 70 532
70 % 34 70 583
50 % 34 70 676
40 % 34 70 718
30 % 34 70 719
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 317
95 % 36 74 469
90 % 36 74 497
70 % 36 74 542
50 % 36 74 627
40 % 36 74 670
30 % 36 74 664
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 352
95 % 36 68 525
90 % 36 68 553
70 % 36 68 607
50 % 36 68 700
40 % 36 70 711
30 % 36 71 698
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 358
95 % 36 68 532
90 % 36 68 561
70 % 36 68 614
50 % 36 68 704
40 % 36 68 736
30 % 36 68 736
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57530
95 % 3 5 12801
90 % 3 5 12559
70 % 3 5 11819
50 % 3 5 10592
40 % 3 5 9666
30 % 3 5 8412
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63523
95 % 1 1 44095
90 % 1 1 42013
70 % 3 21 2574
50 % 7 30 1732
40 % 7 94 377
30 % 26 117 327
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 360
95 % 36 68 534
90 % 36 68 563
70 % 36 68 616
50 % 36 69 690
40 % 36 69 728
30 % 36 69 731
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64867
95 % 36 68 536
90 % 36 68 564
70 % 36 68 617
50 % 36 138 228
40 % 36 138 261
30 % 36 138 272
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 357
95 % 36 68 531
90 % 36 68 560
70 % 36 68 613
50 % 36 68 703
40 % 36 68 735
30 % 36 136 276
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 351
95 % 36 68 523
90 % 36 68 551
70 % 36 68 605
50 % 36 68 698
40 % 36 140 256
30 % 44 423 38
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1904
95 % 36 68 521
90 % 36 68 549
70 % 36 68 602
50 % 36 136 235
40 % 36 138 259
30 % 36 138 271
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48090
95 % 36 74 452
90 % 36 74 480
70 % 36 74 526
50 % 36 74 614
40 % 36 145 242
30 % 36 145 252
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8939
95 % 36 74 455
90 % 36 74 483
70 % 36 74 529
50 % 36 74 616
40 % 36 76 639
30 % 36 77 624
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 461
90 % 36 74 488
70 % 36 74 532
50 % 36 74 619
40 % 37 145 244
30 % 37 145 255
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1939
95 % 3 21 2519
90 % 36 68 557
70 % 36 68 610
50 % 51 96 345
40 % 58 110 307
30 % 58 112 322
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56508
95 % 1 1 39163
90 % 1 7 9098
70 % 3 27 1891
50 % 36 74 620
40 % 36 79 601
30 % 36 79 605
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 312
95 % 36 74 463
90 % 36 74 491
70 % 36 74 536
50 % 36 74 624
40 % 37 77 624
30 % 37 78 618

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1XBI 1 A 50S ribosomal protein L7Ae 2190
2 2FC3 1 A 50S ribosomal protein L7Ae 56636
3 4NUT 1 A 13 kDa ribonucleoprotein-associated protein 4932
4 3PAF 1 A, B 50S ribosomal protein L7Ae 2190
5 1RA4 1 A 50S ribosomal protein L7Ae 2190
6 1SDS 2 A, B, C 50S ribosomal protein L7Ae 2190
7 1ZWZ 1 A, B Snu13p 4932
8 2ALE 1 A NHP2/L7aE family protein YEL026W 4932
9 2AIF 1 A ribosomal protein L7A 5807
10 2CZW 1 A 50S ribosomal protein L7Ae 53953
11 3O85 1 A, B Ribosomal protein L7Ae 5741
12 1PXW 1 A, B LSU ribosomal protein L7AE 29292
13 3HAX 3 D 50S ribosomal protein L7Ae 2261
14 4V9F 8 F 50S ribosomal protein L7Ae 2238
15 4BW0 2 B 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
16 1VQO 9 F 50S ribosomal protein L7AE 2238
17 1VQ8 9 F 50S ribosomal protein L7AE 2238
18 3LWR 3 C 50S ribosomal protein L7Ae 2261
19 1S72 8 F 50S ribosomal protein L7Ae 2238
20 1JJ2 8 F RIBOSOMAL PROTEIN L7AE 2238
21 1YHQ 8 F 50S ribosomal protein L7AE 2238
22 1VQP 9 F 50S ribosomal protein L7AE 2238
23 1VQM 9 F 50S ribosomal protein L7AE 2238
24 3CC2 6 F 50S ribosomal protein L7Ae 2238
25 1VQL 9 F 50S ribosomal protein L7AE 2238
26 1VQK 9 F 50S ribosomal protein L7AE 2238
27 3HJW 3 C 50S ribosomal protein L7Ae 2261
28 1VQN 10 F 50S ribosomal protein L7AE 2238
29 1YIJ 8 F 50S ribosomal protein L7AE 2238
30 1YI2 8 F 50S ribosomal protein L7AE 2238
31 3LWV 3 C 50S ribosomal protein L7Ae 2261
32 1VQ9 9 F 50S ribosomal protein L7AE 2238
33 2HVY 5 D 50S ribosomal protein L7Ae 2261
34 3LWP 3 C 50S ribosomal protein L7Ae 2261
35 1VQ7 9 F 50S ribosomal protein L7AE 2238
36 3CCM 6 F 50S ribosomal protein L7Ae 2238
37 1VQ5 9 F 50S ribosomal protein L7AE 2238
38 3CCJ 6 F 50S ribosomal protein L7Ae 2238
39 3CC7 6 F 50S ribosomal protein L7Ae 2238
40 1YIT 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
41 3CCE 6 F 50S ribosomal protein L7Ae 2238
42 3SIU 1 A, D NHP2-like protein 1 9606
43 3G6E 7 F 50S ribosomal protein L7Ae 2238
44 3CPW 8 F 50S ribosomal protein L7Ae 2238
45 3CCU 6 F 50S ribosomal protein L7Ae 2238
46 1VQ6 10 F 50S ribosomal protein L7AE 2238
47 2OZB 2 A, D U4/U6.U5 tri-snRNP 15.5 kDa protein 9606
48 1M90 9 H RIBOSOMAL PROTEIN L7AE 2238
49 3CCL 6 F 50S ribosomal protein L7Ae 2238
50 1YJW 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
51 1YJ9 8 F 50S ribosomal protein L7AE 2238
52 3CD6 6 F 50S ribosomal protein L7Ae 2238
53 3CCV 6 F 50S ribosomal protein L7Ae 2238
54 4C4W 2 C, G 50S RIBOSOMAL PROTEIN L7AE 2234
55 3CC4 6 F 50S ribosomal protein L7Ae 2238
56 2OTL 8 F 50S ribosomal protein L7Ae 2238
57 3G71 7 F 50S ribosomal protein L7Ae 2238
58 1FFK 7 E RIBOSOMAL PROTEIN L7AE 2238
59 1VQ4 9 F 50S ribosomal protein L7AE 2238
60 1YJN 8 F 50S ribosomal protein L7AE 2238
61 3CMA 6 F 50S ribosomal protein L7Ae 2238
62 3LWO 3 C 50S ribosomal protein L7Ae 2261
63 3CCS 6 F 50S ribosomal protein L7Ae 2238
64 3LWQ 3 C 50S ribosomal protein L7Ae 2261
65 3NVI 2 B, D 50S ribosomal protein L7Ae 2261
66 3CCQ 6 F 50S ribosomal protein L7Ae 2238
67 3I56 6 F 50S ribosomal protein L7Ae 2238
68 3CCR 6 F 50S ribosomal protein L7Ae 2238
69 2OTJ 8 F 50S ribosomal protein L7Ae 2238
70 1KQS 10 F RIBOSOMAL PROTEIN L7AE 2238
71 3OW2 8 F 50S ribosomal protein L7Ae 2238
72 3CXC 9 F RIBOSOMAL PROTEIN L7AE 2238
73 1QVG 9 F 50S ribosomal protein L7Ae 2238
74 3NMU 2 C, G 50S ribosomal protein L7Ae 2261
75 3CME 6 F 50S ribosomal protein L7Ae 2238
76 2QEX 8 F 50S ribosomal protein L7Ae 2238
77 5FJ4 2 C, G 50S RIBOSOMAL PROTEIN L7AE RNA BINDING DOMAIN, UNP RESIDUES 5-119 2234
78 1KC8 8 H RIBOSOMAL PROTEIN L7AE 2238
79 1RLG 2 A, B 50S ribosomal protein L7Ae 2234
80 1N8R 8 H 50S ribosomal protein L7Ae 2238
81 1Q81 9 H 50S ribosomal protein L7Ae 2238
82 1E7K 1 A, B 15.5 KD RNA BINDING PROTEIN 9606
83 1Q82 9 H 50S ribosomal protein L7Ae 2238
84 1QVF 9 F 50S ribosomal protein L7Ae 2238
85 1NJI 8 H 50S ribosomal protein L7Ae 2238
86 1K73 8 H RIBOSOMAL PROTEIN L7AE 2238
87 1K9M 8 H RIBOSOMAL PROTEIN L7AE 2238
88 1KD1 8 H RIBOSOMAL PROTEIN L7AE 2238
89 3I55 7 F 50S ribosomal protein L7Ae 2238
90 1K8A 8 H RIBOSOMAL PROTEIN L7AE 2238
91 3SIV 1 A, D, G, J NHP2-like protein 1 9606
92 1Q86 9 H 50S ribosomal protein L7Ae 2238
93 1M1K 8 H RIBOSOMAL PROTEIN L7AE 2238
94 3G4S 7 F 50S ribosomal protein L7Ae 2238
95 1W2B 11 F 50S RIBOSOMAL PROTEIN L7AE 2238
96 2QA4 8 F 50S ribosomal protein L7Ae 2238
97 1Q7Y 9 H 50S ribosomal protein L7Ae 2238
98 3NVK 2 E, H 50S ribosomal protein L7Ae 2261
99 3PLA 2 C, D, L 50S ribosomal protein L7Ae 2287
100 3ID5 3 C, G 50S ribosomal protein L7Ae 2287
101 3HAY 4 D 50S ribosomal protein L7Ae 2261
102 3JCR 25 I hSnu13 9606
103 3JCM 7 M 13 kDa ribonucleoprotein-associated protein 4932
104 5GAN 20 K 13 kDa ribonucleoprotein-associated protein 4932
105 5GAP 11 K 13 kDa ribonucleoprotein-associated protein 4932
106 4BY9 3 D, G, J, M 50S RIBOSOMAL PROTEIN L7AE RESIDUES 3-123 2261
107 4V4N 12 AG, B3 30S ribosomal protein L7AE SEE REMARK 999 2190
108 4V6U 20 A3, B4, BG 50S ribosomal protein L7Ae 2261
109 4ADX 16 F RPL7AE 145262
110 2LBW 1 A H/ACA ribonucleoprotein complex subunit 2 SEQUENCE DATABASE RESIDUES 36-156 4932
111 2LBX 1 A H/ACA ribonucleoprotein complex subunit 2 sequence database residues 36-156 4932
112 2JNB 1 A NHP2-like protein 1 9606