Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 855
95 % 35 68 690 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 719
70 % 35 68 772
50 % 35 178 202
40 % 43 534 20
30 % 43 534 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60520
95 % 1 1 42213
90 % 1 1 40130
70 % 35 68 763
50 % 35 174 207
40 % 35 174 230
30 % 35 174 240
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 446
95 % 35 74 618 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 646
70 % 35 74 685
50 % 35 74 736
40 % 35 74 767
30 % 42 514 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 444
95 % 35 74 616
90 % 35 74 644
70 % 35 74 682
50 % 35 76 705
40 % 35 76 740
30 % 35 79 696
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 504
95 % 35 68 691 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 721
70 % 35 68 774
50 % 35 70 790
40 % 35 70 824
30 % 35 70 814
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2247
95 % 35 68 689 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 717
70 % 35 68 770
50 % 35 68 817
40 % 35 72 795
30 % 35 72 789
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 505
95 % 35 68 693 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 723
70 % 35 68 776
50 % 35 70 791
40 % 35 70 825
30 % 35 71 799
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 515
95 % 35 68 687 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 715
70 % 35 68 767
50 % 35 68 814
40 % 35 68 849
30 % 35 177 233
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 450
95 % 35 74 622 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 650
70 % 35 74 693
50 % 35 76 710
40 % 35 78 716
30 % 42 419 58
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 449
95 % 35 74 621 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 649
70 % 35 74 690
50 % 35 182 199
40 % 35 182 218
30 % 35 182 227
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 478
95 % 33 70 666 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 690
70 % 33 70 743
50 % 33 70 792
40 % 33 70 826
30 % 33 70 816
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 451
95 % 35 74 623 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 651
70 % 35 74 694
50 % 35 74 743
40 % 42 383 58
30 % 42 409 65
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 501
95 % 35 68 688 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 716
70 % 35 68 768
50 % 35 68 815
40 % 35 70 821
30 % 35 71 798
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 507
95 % 35 68 695 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 725
70 % 35 68 778
50 % 35 68 821
40 % 35 68 853
30 % 35 68 841
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63899
95 % 3 5 14365 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14091
70 % 3 5 13221
50 % 3 5 11759
40 % 3 5 10663
30 % 3 5 9250
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70227
95 % 1 1 48674
90 % 1 1 46221
70 % 3 21 2935
50 % 7 30 1960
40 % 7 131 300
30 % 26 154 266
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 508
95 % 35 68 696 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 726
70 % 35 68 779
50 % 35 69 803
40 % 35 69 838
30 % 35 69 830
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71645
95 % 35 68 697 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 35 68 727
70 % 35 68 780
50 % 35 175 203
40 % 35 175 226
30 % 35 175 237
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 506
95 % 35 68 694 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 724
70 % 35 68 777
50 % 35 68 820
40 % 35 68 852
30 % 35 171 243
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 500
95 % 35 68 686 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 713
70 % 35 68 765
50 % 35 68 813
40 % 35 176 223
30 % 43 525 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2230
95 % 35 68 684 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 711
70 % 35 68 762
50 % 35 173 206
40 % 35 175 225
30 % 35 175 236
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53671
95 % 35 74 608 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 638
70 % 35 74 678
50 % 35 74 729
40 % 35 182 216
30 % 35 182 225
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10153
95 % 35 74 612 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 642
70 % 35 74 680
50 % 35 74 731
40 % 35 76 738
30 % 36 78 705
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 445
95 % 35 74 617 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 645
70 % 35 74 683
50 % 35 74 734
40 % 36 182 217
30 % 36 182 226
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2259
95 % 3 21 2901 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 720
70 % 35 68 773
50 % 50 105 343
40 % 57 124 284
30 % 57 126 289
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62796
95 % 1 1 43477
90 % 1 7 10252
70 % 3 27 2200
50 % 35 74 735
40 % 35 79 704
30 % 35 79 698
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 447
95 % 35 74 619 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 647
70 % 35 74 688
50 % 35 74 740
40 % 36 77 732
30 % 36 78 712

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 6 D 50S ribosomal protein L5P 2238
2 1VQO 7 D 50S ribosomal protein L5P 2238
3 1VQ8 7 D 50S ribosomal protein L5P 2238
4 1S72 6 D 50S ribosomal protein L5P 2238
5 1JJ2 6 D RIBOSOMAL PROTEIN L5 2238
6 1YHQ 6 D 50S ribosomal protein L5P 2238
7 1VQP 7 D 50S ribosomal protein L5P 2238
8 1VQM 7 D 50S ribosomal protein L5P 2238
9 3CC2 4 D 50S ribosomal protein L5P 2238
10 1VQL 7 D 50S ribosomal protein L5P 2238
11 1VQK 7 D 50S ribosomal protein L5P 2238
12 1VQN 8 D 50S ribosomal protein L5P 2238
13 1YIJ 6 D 50S ribosomal protein L5P 2238
14 1YI2 6 D 50S ribosomal protein L5P 2238
15 1VQ9 7 D 50S ribosomal protein L5P 2238
16 1VQ7 7 D 50S ribosomal protein L5P 2238
17 3CCM 4 D 50S ribosomal protein L5P 2238
18 1VQ5 7 D 50S ribosomal protein L5P 2238
19 3CC7 4 D 50S ribosomal protein L5P 2238
20 1YIT 10 D 50S RIBOSOMAL PROTEIN L5P 2238
21 3CCE 4 D 50S ribosomal protein L5P 2238
22 3G6E 5 D 50S ribosomal protein L5P 2238
23 3CPW 6 D 50S ribosomal protein L5P 2238
24 3CCU 4 D 50S ribosomal protein L5P 2238
25 1VQ6 8 D 50S ribosomal protein L5P 2238
26 1M90 7 F RIBOSOMAL PROTEIN L5 2238
27 3CCL 4 D 50S ribosomal protein L5P 2238
28 1YJW 10 D 50S RIBOSOMAL PROTEIN L5P 2238
29 1YJ9 6 D 50S ribosomal protein L5P 2238
30 3CD6 4 D 50S ribosomal protein L5P 2238
31 3CCV 4 D 50S ribosomal protein L5P 2238
32 3CC4 4 D 50S ribosomal protein L5P 2238
33 2OTL 6 D 50S ribosomal protein L5P 2238
34 3G71 5 D 50S ribosomal protein L5P 2238
35 1FFK 6 D RIBOSOMAL PROTEIN L5 2238
36 1VQ4 7 D 50S ribosomal protein L5P 2238
37 1YJN 6 D 50S ribosomal protein L5P 2238
38 3CMA 4 D 50S ribosomal protein L5P 2238
39 3CCS 4 D 50S ribosomal protein L5P 2238
40 3CCQ 4 D 50S ribosomal protein L5P 2238
41 3I56 4 D 50S ribosomal protein L5P 2238
42 3CCR 4 D 50S ribosomal protein L5P 2238
43 2OTJ 6 D 50S ribosomal protein L5P 2238
44 1KQS 8 D RIBOSOMAL PROTEIN L5 2238
45 3OW2 6 D 50S ribosomal protein L5P 2238
46 3CXC 7 D RIBOSOMAL PROTEIN L5 2238
47 1QVG 7 D 50S ribosomal protein L5P 2238
48 3CME 4 D 50S ribosomal protein L5P 2238
49 2QEX 6 D 50S ribosomal protein L5P 2238
50 1KC8 6 F RIBOSOMAL PROTEIN L5 2238
51 1N8R 6 F 50S ribosomal protein L5P 2238
52 1Q81 7 F 50S ribosomal protein L5P 2238
53 1Q82 7 F 50S ribosomal protein L5P 2238
54 1QVF 7 D 50S ribosomal protein L5P 2238
55 1NJI 6 F 50S ribosomal protein L5P 2238
56 1K73 6 F RIBOSOMAL PROTEIN L5 2238
57 1K9M 6 F RIBOSOMAL PROTEIN L5 2238
58 1KD1 6 F RIBOSOMAL PROTEIN L5 2238
59 3I55 5 D 50S ribosomal protein L5P 2238
60 1K8A 6 F RIBOSOMAL PROTEIN L5 2238
61 1Q86 7 F 50S ribosomal protein L5P 2238
62 1M1K 6 F RIBOSOMAL PROTEIN L5 2238
63 3G4S 5 D 50S ribosomal protein L5P 2238
64 3CCJ 4 D 50S ribosomal protein L5P 2238
65 1W2B 9 D 50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5 2238
66 2QA4 6 D 50S ribosomal protein L5P 2238
67 1Q7Y 7 F 50S ribosomal protein L5P 2238
68 4V4P 7 AG 50S ribosomal protein L5 274
69 4V4R 31 BG 50S ribosomal protein L5 274
70 4V4S 31 BG 50S ribosomal protein L5 274
71 4V4T 30 BG 50S ribosomal protein L5 274
72 4ADX 14 D RPL5 145262
73 1ML5 31 g 50S RIBOSOMAL PROTEIN L5 562
74 4V42 31 BG 50S RIBOSOMAL PROTEIN L5 274