Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 827
95 % 36 68 660
90 % 36 68 689
70 % 36 68 734
50 % 36 175 201
40 % 36 175 223
30 % 44 509 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58832
95 % 1 1 41000
90 % 1 1 39021
70 % 36 68 726
50 % 36 171 207
40 % 36 171 231
30 % 36 171 237
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 417
95 % 36 74 584
90 % 36 74 615
70 % 36 74 645
50 % 36 74 693
40 % 36 74 732
30 % 43 491 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 415
95 % 36 74 582
90 % 36 74 613
70 % 36 74 642
50 % 36 76 664
40 % 36 76 707
30 % 36 79 675
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 469
95 % 36 68 661
90 % 36 68 691
70 % 36 68 736
50 % 36 70 757
40 % 36 70 793
30 % 36 70 784
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2168
95 % 36 68 659
90 % 36 68 687
70 % 36 68 732
50 % 36 68 784
40 % 36 72 759
30 % 36 72 751
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 471
95 % 36 68 664
90 % 36 68 693
70 % 36 68 739
50 % 36 70 759
40 % 36 70 795
30 % 36 71 766
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 485
95 % 36 68 657
90 % 36 68 685
70 % 36 68 729
50 % 36 68 781
40 % 36 68 816
30 % 36 174 231
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 422
95 % 36 74 588
90 % 36 74 619
70 % 36 74 651
50 % 36 76 669
40 % 36 78 688
30 % 43 399 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 421
95 % 36 74 587
90 % 36 74 618
70 % 36 74 650
50 % 36 179 196
40 % 36 179 216
30 % 36 179 226
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 448
95 % 34 70 631
90 % 34 70 660
70 % 34 70 709
50 % 34 70 760
40 % 34 70 798
30 % 34 70 788
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 423
95 % 36 74 589
90 % 36 74 620
70 % 36 74 652
50 % 36 74 698
40 % 36 74 735
30 % 36 74 727
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 467
95 % 36 68 658
90 % 36 68 686
70 % 36 68 730
50 % 36 68 782
40 % 36 70 790
30 % 36 71 763
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 473
95 % 36 68 666
90 % 36 68 695
70 % 36 68 741
50 % 36 68 787
40 % 36 68 820
30 % 36 68 809
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62170
95 % 3 5 13912
90 % 3 5 13660
70 % 3 5 12818
50 % 3 5 11446
40 % 3 5 10379
30 % 3 5 9008
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68458
95 % 1 1 47435
90 % 1 1 45092
70 % 3 21 2846
50 % 7 30 1900
40 % 7 128 299
30 % 26 151 269
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 475
95 % 36 68 669
90 % 36 68 698
70 % 36 68 745
50 % 36 69 769
40 % 36 69 809
30 % 36 69 802
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69860
95 % 36 68 670
90 % 36 68 699
70 % 36 68 746
50 % 36 172 204
40 % 36 172 228
30 % 36 172 234
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 472
95 % 36 68 665
90 % 36 68 694
70 % 36 68 740
50 % 36 68 786
40 % 36 68 819
30 % 36 168 243
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 466
95 % 36 68 656
90 % 36 68 684
70 % 36 68 728
50 % 36 68 780
40 % 36 173 224
30 % 44 500 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2151
95 % 36 68 653
90 % 36 68 681
70 % 36 68 724
50 % 36 170 206
40 % 36 172 227
30 % 36 172 233
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52086
95 % 36 74 573
90 % 36 74 605
70 % 36 74 638
50 % 36 74 687
40 % 36 179 214
30 % 36 179 223
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9805
95 % 36 74 578
90 % 36 74 611
70 % 36 74 641
50 % 36 74 689
40 % 36 76 705
30 % 37 78 683
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 416
95 % 36 74 583
90 % 36 74 614
70 % 36 74 643
50 % 36 74 691
40 % 37 179 215
30 % 37 179 225
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2179
95 % 3 21 2814
90 % 36 68 690
70 % 36 68 735
50 % 51 105 321
40 % 58 122 277
30 % 58 124 279
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61078
95 % 1 1 42249
90 % 1 7 9900
70 % 3 27 2114
50 % 36 74 692
40 % 36 79 676
30 % 36 79 677
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 418
95 % 36 74 585
90 % 36 74 616
70 % 36 74 648
50 % 36 74 697
40 % 37 77 700
30 % 37 78 686

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 6 D 50S ribosomal protein L5P 2238
2 1VQO 7 D 50S ribosomal protein L5P 2238
3 1VQ8 7 D 50S ribosomal protein L5P 2238
4 1S72 6 D 50S ribosomal protein L5P 2238
5 1JJ2 6 D RIBOSOMAL PROTEIN L5 2238
6 1YHQ 6 D 50S ribosomal protein L5P 2238
7 1VQP 7 D 50S ribosomal protein L5P 2238
8 1VQM 7 D 50S ribosomal protein L5P 2238
9 3CC2 4 D 50S ribosomal protein L5P 2238
10 1VQL 7 D 50S ribosomal protein L5P 2238
11 1VQK 7 D 50S ribosomal protein L5P 2238
12 1VQN 8 D 50S ribosomal protein L5P 2238
13 1YIJ 6 D 50S ribosomal protein L5P 2238
14 1YI2 6 D 50S ribosomal protein L5P 2238
15 1VQ9 7 D 50S ribosomal protein L5P 2238
16 1VQ7 7 D 50S ribosomal protein L5P 2238
17 3CCM 4 D 50S ribosomal protein L5P 2238
18 1VQ5 7 D 50S ribosomal protein L5P 2238
19 3CCJ 4 D 50S ribosomal protein L5P 2238
20 3CC7 4 D 50S ribosomal protein L5P 2238
21 1YIT 10 D 50S RIBOSOMAL PROTEIN L5P 2238
22 3CCE 4 D 50S ribosomal protein L5P 2238
23 3G6E 5 D 50S ribosomal protein L5P 2238
24 3CPW 6 D 50S ribosomal protein L5P 2238
25 3CCU 4 D 50S ribosomal protein L5P 2238
26 1VQ6 8 D 50S ribosomal protein L5P 2238
27 1M90 7 F RIBOSOMAL PROTEIN L5 2238
28 3CCL 4 D 50S ribosomal protein L5P 2238
29 1YJW 10 D 50S RIBOSOMAL PROTEIN L5P 2238
30 1YJ9 6 D 50S ribosomal protein L5P 2238
31 3CD6 4 D 50S ribosomal protein L5P 2238
32 3CCV 4 D 50S ribosomal protein L5P 2238
33 3CC4 4 D 50S ribosomal protein L5P 2238
34 2OTL 6 D 50S ribosomal protein L5P 2238
35 3G71 5 D 50S ribosomal protein L5P 2238
36 1FFK 6 D RIBOSOMAL PROTEIN L5 2238
37 1VQ4 7 D 50S ribosomal protein L5P 2238
38 1YJN 6 D 50S ribosomal protein L5P 2238
39 3CMA 4 D 50S ribosomal protein L5P 2238
40 3CCS 4 D 50S ribosomal protein L5P 2238
41 3CCQ 4 D 50S ribosomal protein L5P 2238
42 3I56 4 D 50S ribosomal protein L5P 2238
43 3CCR 4 D 50S ribosomal protein L5P 2238
44 2OTJ 6 D 50S ribosomal protein L5P 2238
45 1KQS 8 D RIBOSOMAL PROTEIN L5 2238
46 3OW2 6 D 50S ribosomal protein L5P 2238
47 3CXC 7 D RIBOSOMAL PROTEIN L5 2238
48 1QVG 7 D 50S ribosomal protein L5P 2238
49 3CME 4 D 50S ribosomal protein L5P 2238
50 2QEX 6 D 50S ribosomal protein L5P 2238
51 1KC8 6 F RIBOSOMAL PROTEIN L5 2238
52 1N8R 6 F 50S ribosomal protein L5P 2238
53 1Q81 7 F 50S ribosomal protein L5P 2238
54 1Q82 7 F 50S ribosomal protein L5P 2238
55 1QVF 7 D 50S ribosomal protein L5P 2238
56 1NJI 6 F 50S ribosomal protein L5P 2238
57 1K73 6 F RIBOSOMAL PROTEIN L5 2238
58 1K9M 6 F RIBOSOMAL PROTEIN L5 2238
59 1KD1 6 F RIBOSOMAL PROTEIN L5 2238
60 3I55 5 D 50S ribosomal protein L5P 2238
61 1K8A 6 F RIBOSOMAL PROTEIN L5 2238
62 1Q86 7 F 50S ribosomal protein L5P 2238
63 1M1K 6 F RIBOSOMAL PROTEIN L5 2238
64 3G4S 5 D 50S ribosomal protein L5P 2238
65 1W2B 9 D 50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5 2238
66 2QA4 6 D 50S ribosomal protein L5P 2238
67 1Q7Y 7 F 50S ribosomal protein L5P 2238
68 4V4P 7 AG 50S ribosomal protein L5 274
69 4V4R 31 BG 50S ribosomal protein L5 274
70 4V4S 31 BG 50S ribosomal protein L5 274
71 4V4T 30 BG 50S ribosomal protein L5 274
72 4ADX 14 D RPL5 145262
73 1ML5 31 g 50S RIBOSOMAL PROTEIN L5 562
74 4V42 31 BG 50S RIBOSOMAL PROTEIN L5 274