POP-OUT | CLOSE

An Information Portal to 110619 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 478 Members. Sequence cutoff: 70% Cluster size: 74 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
Select for download / view details OR: Select two chains for comparison
  Download      Details  
1 4V9F 6 D 50S ribosomal protein L5P 272569  
2 1VQO 7 D 50S ribosomal protein L5P 2238  
3 1VQ8 7 D 50S ribosomal protein L5P 2238  
4 1S72 6 D 50S ribosomal protein L5P 2238  
5 1JJ2 6 D RIBOSOMAL PROTEIN L5 2238  
6 1YHQ 6 D 50S ribosomal protein L5P 2238  
7 1VQP 7 D 50S ribosomal protein L5P 2238  
8 1VQM 7 D 50S ribosomal protein L5P 2238  
9 3CC2 4 D 50S ribosomal protein L5P 2238  
10 1VQL 7 D 50S ribosomal protein L5P 2238  
11 1VQK 7 D 50S ribosomal protein L5P 2238  
12 1VQN 8 D 50S ribosomal protein L5P 2238  
13 1YIJ 6 D 50S ribosomal protein L5P 2238  
14 1YI2 6 D 50S ribosomal protein L5P 2238  
15 1VQ9 7 D 50S ribosomal protein L5P 2238  
16 1VQ7 7 D 50S ribosomal protein L5P 2238  
17 3CCM 4 D 50S ribosomal protein L5P 2238  
18 1VQ5 7 D 50S ribosomal protein L5P 2238  
19 3CCJ 4 D 50S ribosomal protein L5P 2238  
20 3CC7 4 D 50S ribosomal protein L5P 2238  
21 1YIT 10 D 50S RIBOSOMAL PROTEIN L5P 2238  
22 3CCE 4 D 50S ribosomal protein L5P 2238  
23 3G6E 5 D 50S ribosomal protein L5P 2238  
24 3CPW 6 D 50S ribosomal protein L5P 2238  
25 3CCU 4 D 50S ribosomal protein L5P 2238  
26 1VQ6 8 D 50S ribosomal protein L5P 2238  
27 1M90 7 F RIBOSOMAL PROTEIN L5 2238  
28 3CCL 4 D 50S ribosomal protein L5P 2238  
29 1YJW 10 D 50S RIBOSOMAL PROTEIN L5P 2238  
30 1YJ9 6 D 50S ribosomal protein L5P 2238  
31 3CD6 4 D 50S ribosomal protein L5P 2238  
32 3CCV 4 D 50S ribosomal protein L5P 2238  
33 3CC4 4 D 50S ribosomal protein L5P 2238  
34 2OTL 6 D 50S ribosomal protein L5P 2238  
35 3G71 5 D 50S ribosomal protein L5P 2238  
36 1FFK 6 D RIBOSOMAL PROTEIN L5 2238  
37 1VQ4 7 D 50S ribosomal protein L5P 2238  
38 1YJN 6 D 50S ribosomal protein L5P 2238  
39 3CMA 4 D 50S ribosomal protein L5P 2238  
40 3CCS 4 D 50S ribosomal protein L5P 2238  
41 3CCQ 4 D 50S ribosomal protein L5P 2238  
42 3I56 4 D 50S ribosomal protein L5P 2238  
43 3CCR 4 D 50S ribosomal protein L5P 2238  
44 2OTJ 6 D 50S ribosomal protein L5P 2238  
45 1KQS 8 D RIBOSOMAL PROTEIN L5 2238  
46 3OW2 6 D 50S ribosomal protein L5P 2238  
47 3CXC 7 D RIBOSOMAL PROTEIN L5 2238  
48 1QVG 7 D 50S ribosomal protein L5P 2238  
49 3CME 4 D 50S ribosomal protein L5P 2238  
50 2QEX 6 D 50S ribosomal protein L5P 2238  
51 1KC8 6 F RIBOSOMAL PROTEIN L5 2238  
52 1N8R 6 F 50S ribosomal protein L5P 2238  
53 1Q81 7 F 50S ribosomal protein L5P 2238  
54 1Q82 7 F 50S ribosomal protein L5P 2238  
55 1QVF 7 D 50S ribosomal protein L5P 2238  
56 1NJI 6 F 50S ribosomal protein L5P 2238  
57 1K73 6 F RIBOSOMAL PROTEIN L5 2238  
58 1K9M 6 F RIBOSOMAL PROTEIN L5 2238  
59 1KD1 6 F RIBOSOMAL PROTEIN L5 2238  
60 3I55 5 D 50S ribosomal protein L5P 2238  
61 1K8A 6 F RIBOSOMAL PROTEIN L5 2238  
62 1Q86 7 F 50S ribosomal protein L5P 2238  
63 1M1K 6 F RIBOSOMAL PROTEIN L5 2238  
64 3G4S 5 D 50S ribosomal protein L5P 2238  
65 1W2B 9 D 50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5 2238  
66 2QA4 6 D 50S ribosomal protein L5P 2238  
67 1Q7Y 7 F 50S ribosomal protein L5P 2238  
68 4V4P 7 AG 50S ribosomal protein L5 300852  
69 4V4R 31 BG 50S ribosomal protein L5 274  
70 4V4S 31 BG 50S ribosomal protein L5 274  
71 4V4T 30 BG 50S ribosomal protein L5 274  
72 4ADX 14 D RPL5 187420  
73 1ML5 31 g 50S RIBOSOMAL PROTEIN L5 562  
74 4V42 31 BG 50S RIBOSOMAL PROTEIN L5 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 679
95% 36 68 483
90% 36 68 506
70% 36 68 546
50% 36 123 238
40% 36 123 267
30% 41 360 45
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50309
95% 1 1 35245
90% 1 1 33672
70% 36 68 539
50% 36 121 245
40% 36 121 272
30% 36 121 289
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 419
90% 36 74 447
70% 36 74 480
50% 36 74 533
40% 36 74 574
30% 40 352 50
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 417
90% 36 74 445
70% 36 74 477
50% 36 76 505
40% 36 76 549
30% 36 78 531
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 329
95% 36 68 485
90% 36 68 509
70% 36 68 549
50% 36 70 593
40% 36 70 630
30% 36 70 631
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1756
95% 36 68 481
90% 36 68 504
70% 36 68 544
50% 36 68 626
40% 36 70 629
30% 36 71 610
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 486
90% 36 68 510
70% 36 68 551
50% 36 70 595
40% 36 70 633
30% 36 71 612
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 339
95% 36 68 479
90% 36 68 502
70% 36 68 542
50% 36 68 623
40% 36 68 656
30% 36 124 276
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 297
95% 36 74 423
90% 36 74 451
70% 36 74 485
50% 36 76 508
40% 36 78 526
30% 40 309 61
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 421
90% 36 74 449
70% 36 74 483
50% 36 130 223
40% 36 130 248
30% 36 130 262
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 317
95% 34 70 462
90% 34 70 484
70% 34 70 519
50% 34 70 596
40% 34 70 634
30% 34 70 633
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 299
95% 36 74 424
90% 36 74 452
70% 36 74 486
50% 36 74 540
40% 36 74 580
30% 36 74 575
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 480
90% 36 68 503
70% 36 68 543
50% 36 68 624
40% 36 70 628
30% 36 71 609
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 488
90% 36 68 512
70% 36 68 553
50% 36 68 629
40% 36 68 660
30% 36 68 657
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53330
95% 3 5 11779
90% 3 5 11586
70% 3 5 10941
50% 3 5 9824
40% 3 5 8972
30% 3 5 7839
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59078
95% 1 1 41130
90% 1 1 39297
70% 3 21 2365
50% 7 30 1603
40% 7 79 410
30% 26 102 336
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 334
95% 36 68 490
90% 36 68 514
70% 36 68 555
50% 36 69 614
40% 36 69 649
30% 36 69 646
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 60386
95% 36 68 491
90% 36 68 515
70% 36 68 556
50% 36 123 239
40% 36 123 268
30% 36 123 284
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 487
90% 36 68 511
70% 36 68 552
50% 36 68 628
40% 36 68 659
30% 36 122 288
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 478
90% 36 68 501
70% 36 68 541
50% 36 68 622
40% 36 122 270
30% 41 355 49
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1737
95% 36 68 475
90% 36 68 498
70% 36 68 536
50% 36 121 244
40% 36 123 266
30% 36 123 283
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44411
95% 36 74 410
90% 36 74 437
70% 36 74 473
50% 36 74 524
40% 36 127 255
30% 36 127 269
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8189
95% 36 74 414
90% 36 74 441
70% 36 74 476
50% 36 74 526
40% 36 76 544
30% 36 77 536
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 418
90% 36 74 446
70% 36 74 478
50% 36 74 530
40% 36 128 251
30% 36 128 266
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1767
95% 3 21 2313
90% 36 68 508
70% 36 68 548
50% 51 95 319
40% 58 105 298
30% 58 107 308
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52339
95% 1 1 36374
90% 1 7 8374
70% 3 27 1739
50% 36 74 531
40% 36 79 515
30% 36 79 524
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 420
90% 36 74 448
70% 36 74 482
50% 36 74 535
40% 37 77 535
30% 37 78 532
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.