Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 847
95 % 35 68 677 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 707
70 % 35 68 762
50 % 35 178 202
40 % 43 533 20
30 % 43 533 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60212
95 % 1 1 42003
90 % 1 1 39940
70 % 35 68 752
50 % 35 174 207
40 % 35 174 230
30 % 35 174 238
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 432
95 % 35 74 603 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 632
70 % 35 74 670
50 % 35 74 717
40 % 35 74 750
30 % 42 513 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 430
95 % 35 74 601 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 630
70 % 35 74 667
50 % 35 76 689
40 % 35 76 723
30 % 35 79 688
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 490
95 % 35 68 678 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 709
70 % 35 68 764
50 % 35 70 775
40 % 35 70 807
30 % 35 70 799
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2230
95 % 35 68 675 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 704
70 % 35 68 759
50 % 35 68 806
40 % 35 72 778
30 % 35 72 771
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 492
95 % 35 68 682 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 713
70 % 35 68 768
50 % 35 70 776
40 % 35 70 808
30 % 35 71 784
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 507
95 % 35 68 673 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 702
70 % 35 68 756
50 % 35 68 803
40 % 35 68 837
30 % 35 177 231
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 436
95 % 35 74 608 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 637
70 % 35 74 679
50 % 35 76 693
40 % 35 78 701
30 % 42 418 61
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 435
95 % 35 74 607 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 636
70 % 35 74 676
50 % 35 182 199
40 % 35 182 218
30 % 35 182 226
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 464
95 % 33 70 653 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 33 70 679
70 % 33 70 734
50 % 33 70 780
40 % 33 70 813
30 % 33 70 804
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 437
95 % 35 74 609
90 % 35 74 638
70 % 35 74 680
50 % 35 74 725
40 % 42 382 58
30 % 42 408 65
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 488
95 % 35 68 674 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 703
70 % 35 68 757
50 % 35 68 804
40 % 35 70 804
30 % 35 71 782
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 494
95 % 35 68 684 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 715
70 % 35 68 770
50 % 35 68 812
40 % 35 68 844
30 % 35 68 831
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63582
95 % 3 5 14282 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14011
70 % 3 5 13147
50 % 3 5 11700
40 % 3 5 10610
30 % 3 5 9202
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69899
95 % 1 1 48458
90 % 1 1 46025
70 % 3 21 2919
50 % 7 30 1941
40 % 7 131 298
30 % 26 154 266
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 496
95 % 35 68 687 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 718
70 % 35 68 773
50 % 35 69 793
40 % 35 69 827
30 % 35 69 818
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71316
95 % 35 68 688 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 719
70 % 35 68 774
50 % 35 175 203
40 % 35 175 226
30 % 35 175 233
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 493
95 % 35 68 683 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 714
70 % 35 68 769
50 % 35 68 811
40 % 35 68 843
30 % 35 171 240
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 487
95 % 35 68 672 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 700
70 % 35 68 754
50 % 35 68 802
40 % 35 176 223
30 % 43 524 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2213
95 % 35 68 670 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 698
70 % 35 68 751
50 % 35 173 206
40 % 35 175 225
30 % 35 175 232
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53390
95 % 35 74 593 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 624
70 % 35 74 663
50 % 35 74 711
40 % 35 182 216
30 % 35 182 224
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10091
95 % 35 74 597 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 628
70 % 35 74 665
50 % 35 74 713
40 % 35 76 721
30 % 36 78 695
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 431
95 % 35 74 602 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 631
70 % 35 74 668
50 % 35 74 715
40 % 36 182 217
30 % 36 182 225
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2243
95 % 3 21 2884 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 708
70 % 35 68 763
50 % 50 105 339
40 % 57 123 283
30 % 57 125 290
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62483
95 % 1 1 43266
90 % 1 7 10181
70 % 3 27 2179
50 % 35 74 716
40 % 35 79 692
30 % 35 79 690
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 433
95 % 35 74 604 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 633
70 % 35 74 673
50 % 35 74 721
40 % 36 77 714
30 % 36 78 700

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 6 D 50S ribosomal protein L5P 2238
2 1VQO 7 D 50S ribosomal protein L5P 2238
3 1VQ8 7 D 50S ribosomal protein L5P 2238
4 1S72 6 D 50S ribosomal protein L5P 2238
5 1JJ2 6 D RIBOSOMAL PROTEIN L5 2238
6 1YHQ 6 D 50S ribosomal protein L5P 2238
7 1VQP 7 D 50S ribosomal protein L5P 2238
8 1VQM 7 D 50S ribosomal protein L5P 2238
9 3CC2 4 D 50S ribosomal protein L5P 2238
10 1VQL 7 D 50S ribosomal protein L5P 2238
11 1VQK 7 D 50S ribosomal protein L5P 2238
12 1VQN 8 D 50S ribosomal protein L5P 2238
13 1YIJ 6 D 50S ribosomal protein L5P 2238
14 1YI2 6 D 50S ribosomal protein L5P 2238
15 1VQ9 7 D 50S ribosomal protein L5P 2238
16 1VQ7 7 D 50S ribosomal protein L5P 2238
17 3CCM 4 D 50S ribosomal protein L5P 2238
18 1VQ5 7 D 50S ribosomal protein L5P 2238
19 3CC7 4 D 50S ribosomal protein L5P 2238
20 1YIT 10 D 50S RIBOSOMAL PROTEIN L5P 2238
21 3CCE 4 D 50S ribosomal protein L5P 2238
22 3G6E 5 D 50S ribosomal protein L5P 2238
23 3CPW 6 D 50S ribosomal protein L5P 2238
24 3CCU 4 D 50S ribosomal protein L5P 2238
25 1VQ6 8 D 50S ribosomal protein L5P 2238
26 1M90 7 F RIBOSOMAL PROTEIN L5 2238
27 3CCL 4 D 50S ribosomal protein L5P 2238
28 1YJW 10 D 50S RIBOSOMAL PROTEIN L5P 2238
29 1YJ9 6 D 50S ribosomal protein L5P 2238
30 3CD6 4 D 50S ribosomal protein L5P 2238
31 3CCV 4 D 50S ribosomal protein L5P 2238
32 3CC4 4 D 50S ribosomal protein L5P 2238
33 2OTL 6 D 50S ribosomal protein L5P 2238
34 3G71 5 D 50S ribosomal protein L5P 2238
35 1FFK 6 D RIBOSOMAL PROTEIN L5 2238
36 1VQ4 7 D 50S ribosomal protein L5P 2238
37 1YJN 6 D 50S ribosomal protein L5P 2238
38 3CMA 4 D 50S ribosomal protein L5P 2238
39 3CCS 4 D 50S ribosomal protein L5P 2238
40 3CCQ 4 D 50S ribosomal protein L5P 2238
41 3I56 4 D 50S ribosomal protein L5P 2238
42 3CCR 4 D 50S ribosomal protein L5P 2238
43 2OTJ 6 D 50S ribosomal protein L5P 2238
44 1KQS 8 D RIBOSOMAL PROTEIN L5 2238
45 3OW2 6 D 50S ribosomal protein L5P 2238
46 3CXC 7 D RIBOSOMAL PROTEIN L5 2238
47 1QVG 7 D 50S ribosomal protein L5P 2238
48 3CME 4 D 50S ribosomal protein L5P 2238
49 2QEX 6 D 50S ribosomal protein L5P 2238
50 1KC8 6 F RIBOSOMAL PROTEIN L5 2238
51 1N8R 6 F 50S ribosomal protein L5P 2238
52 1Q81 7 F 50S ribosomal protein L5P 2238
53 1Q82 7 F 50S ribosomal protein L5P 2238
54 1QVF 7 D 50S ribosomal protein L5P 2238
55 1NJI 6 F 50S ribosomal protein L5P 2238
56 1K73 6 F RIBOSOMAL PROTEIN L5 2238
57 1K9M 6 F RIBOSOMAL PROTEIN L5 2238
58 1KD1 6 F RIBOSOMAL PROTEIN L5 2238
59 3I55 5 D 50S ribosomal protein L5P 2238
60 1K8A 6 F RIBOSOMAL PROTEIN L5 2238
61 1Q86 7 F 50S ribosomal protein L5P 2238
62 1M1K 6 F RIBOSOMAL PROTEIN L5 2238
63 3G4S 5 D 50S ribosomal protein L5P 2238
64 3CCJ 4 D 50S ribosomal protein L5P 2238
65 1W2B 9 D 50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5 2238
66 2QA4 6 D 50S ribosomal protein L5P 2238
67 1Q7Y 7 F 50S ribosomal protein L5P 2238
68 4V4P 7 AG 50S ribosomal protein L5 274
69 4V4R 31 BG 50S ribosomal protein L5 274
70 4V4S 31 BG 50S ribosomal protein L5 274
71 4V4T 30 BG 50S ribosomal protein L5 274
72 4ADX 14 D RPL5 145262
73 1ML5 31 g 50S RIBOSOMAL PROTEIN L5 562
74 4V42 31 BG 50S RIBOSOMAL PROTEIN L5 274