Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 799
95 % 36 68 632
90 % 36 68 659
70 % 36 68 700
50 % 36 168 203
40 % 36 168 224
30 % 44 495 30
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57535
95 % 1 1 40079
90 % 1 1 38166
70 % 36 68 691
50 % 36 164 212
40 % 36 164 234
30 % 36 164 239
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 391
95 % 36 74 551
90 % 36 74 584
70 % 36 74 617
50 % 36 74 666
40 % 36 74 708
30 % 43 481 35
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 389
95 % 36 74 549
90 % 36 74 582
70 % 36 74 614
50 % 36 76 645
40 % 36 76 689
30 % 36 79 663
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 448
95 % 36 68 633
90 % 36 68 661
70 % 36 68 702
50 % 36 70 720
40 % 36 70 760
30 % 36 70 760
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2115
95 % 36 68 631
90 % 36 68 657
70 % 36 68 698
50 % 36 68 750
40 % 36 72 729
30 % 36 72 727
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 450
95 % 36 68 636
90 % 36 68 663
70 % 36 68 707
50 % 36 70 721
40 % 36 70 761
30 % 36 71 742
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 458
95 % 36 68 628
90 % 36 68 654
70 % 36 68 694
50 % 36 68 747
40 % 36 68 780
30 % 36 167 234
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 398
95 % 36 74 558
90 % 36 74 589
70 % 36 74 623
50 % 36 76 647
40 % 36 78 666
30 % 43 396 56
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 397
95 % 36 74 557
90 % 36 74 588
70 % 36 74 622
50 % 36 172 198
40 % 36 172 219
30 % 36 172 227
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 430
95 % 34 70 609
90 % 34 70 636
70 % 34 70 670
50 % 34 70 722
40 % 34 70 763
30 % 34 70 762
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 399
95 % 36 74 559
90 % 36 74 590
70 % 36 74 624
50 % 36 74 671
40 % 36 74 712
30 % 36 74 711
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 446
95 % 36 68 630
90 % 36 68 656
70 % 36 68 696
50 % 36 68 748
40 % 36 70 757
30 % 36 71 740
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 452
95 % 36 68 638
90 % 36 68 665
70 % 36 68 709
50 % 36 68 754
40 % 36 68 784
30 % 36 68 785
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60821
95 % 3 5 13606
90 % 3 5 13361
70 % 3 5 12538
50 % 3 5 11209
40 % 3 5 10174
30 % 3 5 8829
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67053
95 % 1 1 46457
90 % 1 1 44199
70 % 3 21 2783
50 % 7 30 1856
40 % 7 121 306
30 % 26 144 268
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 453
95 % 36 68 639
90 % 36 68 666
70 % 36 68 711
50 % 36 69 733
40 % 36 69 774
30 % 36 69 776
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68440
95 % 36 68 640
90 % 36 68 667
70 % 36 68 712
50 % 36 165 205
40 % 36 165 229
30 % 36 165 236
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 451
95 % 36 68 637
90 % 36 68 664
70 % 36 68 708
50 % 36 68 753
40 % 36 68 783
30 % 36 161 243
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 444
95 % 36 68 627
90 % 36 68 653
70 % 36 68 693
50 % 36 68 746
40 % 36 166 227
30 % 44 486 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2095
95 % 36 68 624
90 % 36 68 651
70 % 36 68 690
50 % 36 163 211
40 % 36 165 228
30 % 36 165 235
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50907
95 % 36 74 543
90 % 36 74 578
70 % 36 74 609
50 % 36 74 659
40 % 36 172 217
30 % 36 172 225
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9604
95 % 36 74 545
90 % 36 74 580
70 % 36 74 613
50 % 36 74 662
40 % 36 76 687
30 % 36 77 681
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 390
95 % 36 74 550
90 % 36 74 583
70 % 36 74 615
50 % 36 74 664
40 % 37 172 218
30 % 37 172 226
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2125
95 % 3 21 2752
90 % 36 68 660
70 % 36 68 701
50 % 51 105 307
40 % 58 120 278
30 % 58 122 277
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59753
95 % 1 1 41317
90 % 1 7 9702
70 % 3 27 2056
50 % 36 74 665
40 % 36 79 654
30 % 36 79 666
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 392
95 % 36 74 552
90 % 36 74 585
70 % 36 74 620
50 % 36 74 669
40 % 37 77 679
30 % 37 78 673

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 6 D 50S ribosomal protein L5P 2238
2 1VQO 7 D 50S ribosomal protein L5P 2238
3 1VQ8 7 D 50S ribosomal protein L5P 2238
4 1S72 6 D 50S ribosomal protein L5P 2238
5 1JJ2 6 D RIBOSOMAL PROTEIN L5 2238
6 1YHQ 6 D 50S ribosomal protein L5P 2238
7 1VQP 7 D 50S ribosomal protein L5P 2238
8 4XXB 1 A 60S ribosomal protein L11 9606
9 1VQM 7 D 50S ribosomal protein L5P 2238
10 3CC2 4 D 50S ribosomal protein L5P 2238
11 1VQL 7 D 50S ribosomal protein L5P 2238
12 1VQK 7 D 50S ribosomal protein L5P 2238
13 1VQN 8 D 50S ribosomal protein L5P 2238
14 1YIJ 6 D 50S ribosomal protein L5P 2238
15 1YI2 6 D 50S ribosomal protein L5P 2238
16 1VQ9 7 D 50S ribosomal protein L5P 2238
17 1VQ7 7 D 50S ribosomal protein L5P 2238
18 3CCM 4 D 50S ribosomal protein L5P 2238
19 1VQ5 7 D 50S ribosomal protein L5P 2238
20 3CCJ 4 D 50S ribosomal protein L5P 2238
21 3CC7 4 D 50S ribosomal protein L5P 2238
22 1YIT 10 D 50S RIBOSOMAL PROTEIN L5P 2238
23 3CCE 4 D 50S ribosomal protein L5P 2238
24 3G6E 5 D 50S ribosomal protein L5P 2238
25 3CPW 6 D 50S ribosomal protein L5P 2238
26 3CCU 4 D 50S ribosomal protein L5P 2238
27 1VQ6 8 D 50S ribosomal protein L5P 2238
28 1M90 7 F RIBOSOMAL PROTEIN L5 2238
29 3CCL 4 D 50S ribosomal protein L5P 2238
30 1YJW 10 D 50S RIBOSOMAL PROTEIN L5P 2238
31 1YJ9 6 D 50S ribosomal protein L5P 2238
32 3CD6 4 D 50S ribosomal protein L5P 2238
33 3CCV 4 D 50S ribosomal protein L5P 2238
34 3CC4 4 D 50S ribosomal protein L5P 2238
35 2OTL 6 D 50S ribosomal protein L5P 2238
36 3G71 5 D 50S ribosomal protein L5P 2238
37 1FFK 6 D RIBOSOMAL PROTEIN L5 2238
38 1VQ4 7 D 50S ribosomal protein L5P 2238
39 1YJN 6 D 50S ribosomal protein L5P 2238
40 3CMA 4 D 50S ribosomal protein L5P 2238
41 3CCS 4 D 50S ribosomal protein L5P 2238
42 3CCQ 4 D 50S ribosomal protein L5P 2238
43 3I56 4 D 50S ribosomal protein L5P 2238
44 3CCR 4 D 50S ribosomal protein L5P 2238
45 2OTJ 6 D 50S ribosomal protein L5P 2238
46 4V88 48 BJ, DJ 60S ribosomal protein L11-A 4932
47 1KQS 8 D RIBOSOMAL PROTEIN L5 2238
48 3OW2 6 D 50S ribosomal protein L5P 2238
49 4U4R 48 M1, m1 60S ribosomal protein L11-B 4932
50 3CXC 7 D RIBOSOMAL PROTEIN L5 2238
51 1QVG 7 D 50S ribosomal protein L5P 2238
52 3CME 4 D 50S ribosomal protein L5P 2238
53 2QEX 6 D 50S ribosomal protein L5P 2238
54 4U3U 48 M1, m1 60S ribosomal protein L11-B 4932
55 1KC8 6 F RIBOSOMAL PROTEIN L5 2238
56 4U3M 48 M1, m1 60S ribosomal protein L11-B 4932
57 1N8R 6 F 50S ribosomal protein L5P 2238
58 4U3N 48 M1, m1 60S ribosomal protein L11-B 4932
59 1Q81 7 F 50S ribosomal protein L5P 2238
60 1Q82 7 F 50S ribosomal protein L5P 2238
61 1QVF 7 D 50S ribosomal protein L5P 2238
62 4U52 48 M1, m1 60S ribosomal protein L11-B 4932
63 4U4Q 48 M1, m1 60S ribosomal protein L11-B 4932
64 1NJI 6 F 50S ribosomal protein L5P 2238
65 4U6F 48 M1, m1 60S ribosomal protein L11-B 4932
66 4U4U 48 M1, m1 60S ribosomal protein L11-B 4932
67 1K73 6 F RIBOSOMAL PROTEIN L5 2238
68 4U4Z 48 M1, m1 60S ribosomal protein L11-B 4932
69 4U4Y 48 M1, m1 60S ribosomal protein L11-B 4932
70 4U4N 48 M1, m1 60S ribosomal protein L11-B 4932
71 4U55 48 M1, m1 60S ribosomal protein L11-B 4932
72 1K9M 6 F RIBOSOMAL PROTEIN L5 2238
73 1KD1 6 F RIBOSOMAL PROTEIN L5 2238
74 5DAT 48 M1, m1 60S ribosomal protein L11-B 4932
75 3I55 5 D 50S ribosomal protein L5P 2238
76 5I4L 48 M1, m1 60S ribosomal protein L11-B 4932
77 4U51 48 M1, m1 60S ribosomal protein L11-B 4932
78 1K8A 6 F RIBOSOMAL PROTEIN L5 2238
79 4U53 48 M1, m1 60S ribosomal protein L11-B 4932
80 1Q86 7 F 50S ribosomal protein L5P 2238
81 4U50 48 M1, m1 60S ribosomal protein L11-B 4932
82 5LYB 48 M1, m1 60S ribosomal protein L11-B 4932
83 1M1K 6 F RIBOSOMAL PROTEIN L5 2238
84 3G4S 5 D 50S ribosomal protein L5P 2238
85 1W2B 9 D 50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5 2238
86 4U56 48 M1, m1 60S ribosomal protein L11-B 4932
87 2QA4 6 D 50S ribosomal protein L5P 2238
88 5TGA 48 M1, m1 60S ribosomal protein L11-B 4932
89 1Q7Y 7 F 50S ribosomal protein L5P 2238
90 5FCJ 48 M1, m1 60S ribosomal protein L11-A 4932
91 4U4O 48 M1, m1 60S ribosomal protein L11-B 4932
92 5DGV 48 M1, m1 60S ribosomal protein L11-B 4932
93 4V8P 25 BD, CD, ED, GD 60S RIBOSOMAL PROTEIN L11 5911
94 5FCI 48 M1, m1 60S ribosomal protein L11-A 4932
95 5AFF 3 C RIBOSOMAL PROTEIN L11 209285
96 5DC3 48 M1, m1 60S ribosomal protein L11-B 4932
97 5DGF 48 M1, m1 60S ribosomal protein L11-B 4932
98 5TGM 48 M1, m1 60S ribosomal protein L11-B 4932
99 4V7R 42 BK, DK 60S ribosomal protein L11-A 4932
100 4V4P 7 AG 50S ribosomal protein L5 274
101 4V4R 31 BG 50S ribosomal protein L5 274
102 4V4S 31 BG 50S ribosomal protein L5 274
103 4V4T 30 BG 50S ribosomal protein L5 274
104 5MC6 47 AG 60S ribosomal protein L11-A 4932
105 5M1J 56 J5 60S ribosomal protein L11-A 4932
106 5LZS 10 J Uncharacterized protein 9986
107 5LZT 10 J uL5 9986
108 5LZU 10 J uL5 9986
109 5LZV 10 J uL5 9986
110 5LZW 10 J uL5 9986
111 5LZX 10 J uL5 9986
112 5LZY 10 J uL5 9986
113 5LZZ 10 J uL5 9986
114 5JUO 15 O uL5 (yeast L11) 4932
115 5JUP 15 O uL5 (yeast L11) 4932
116 5JUS 15 O uL5 (yeast L11) 4932
117 5JUT 15 O uL5 (yeast L11) 4932
118 5JUU 15 O uL5 (yeast L11) 4932
119 5JCS 19 J 60S ribosomal protein L11-A 4932
120 5IT7 13 JJ KLLA0F08261p 28985
121 3JCT 10 J 60S ribosomal protein L11-A 4932
122 3JCS 12 D ribosomal protein L5 5661
123 5GAK 31 M 60S ribosomal protein L11-A 4932
124 5FL8 10 J 60S ribosomal protein L11-A 4932
125 5APN 13 J 60S ribosomal protein L11-A 4932
126 5APO 13 J 60S ribosomal protein L11-A 4932
127 3JBN 72 AG 60S ribosomal protein uL5 5833
128 3JBO 72 AG 60S ribosomal protein uL5 5833
129 3JBP 72 AG 60S ribosomal protein uL5 5833
130 3JAN 5 J Ribosomal protein uL5 SEE REMARK 999 9986
131 3JAJ 5 J Ribosomal protein uL5 SEE REMARK 999 9986
132 3JAG 10 J uL5 9986
133 3JAH 10 J uL5 9986
134 3JAI 10 J uL5 9986
135 4UG0 13 LJ 60S RIBOSOMAL PROTEIN L11 9606
136 5AJ0 12 AJ 60S ribosomal protein L11 9606
137 3J92 10 J uL5 9986
138 4D67 10 J 60S RIBOSOMAL PROTEIN L11 9986
139 4D5Y 10 J 60S RIBOSOMAL PROTEIN UL5 9986
140 4V3P 38 LE Ribosomal protein L11 4565
141 3J7O 13 J Ribosomal protein uL5 9823
142 3J7P 13 J Ribosomal protein uL5 9823
143 3J7Q 13 J Ribosomal protein uL5 9823
144 3J7R 13 J Ribosomal protein uL5 9823
145 4UJC 16 BJ 60S RIBOSOMAL PROTEIN L11 9986
146 4UJD 13 AJ 60S RIBOSOMAL PROTEIN L11 9986
147 3J79 7 G 60S ribosomal protein uL5 5833
148 3J77 11 61 60S ribosomal protein L11 4932
149 3J78 11 61 60S ribosomal protein L11 4932
150 3J6X 14 51 60S ribosomal protein L11 4932
151 3J6Y 14 51 60S ribosomal protein L11 4932
152 4UJE 47 CJ 60S RIBOSOMAL PROTEIN L11 9986
153 4V91 13 J UL5 RIBOSOMAL PROTEIN UL5 28985
154 4V7F 8 E 60S ribosomal protein L11 4932
155 4V7E 42 CJ 60S ribosomal protein L5 4565
156 4V8Y 44 BJ 60S RIBOSOMAL PROTEIN L11-A 4932
157 4V8Z 44 BJ 60S RIBOSOMAL PROTEIN L11-A 4932
158 4V4N 48 AE 50S ribosomal protein L5P SEE REMARK 999 2190
159 4V6W 79 CJ 60S ribosomal protein L11 7227
160 4V6X 79 CJ 60S ribosomal protein L11 9606
161 4V8M 45 BL 60S RIBOSOMAL PROTEIN L11, PUTATIVE 185431
162 4V6U 40 BE 50S ribosomal protein L5P 2261
163 4V8T 10 J 60S RIBOSOMAL PROTEIN L11-B 4932
164 4ADX 14 D RPL5 145262
165 3J0Q 17 k Ribosomal protein L11 9986
166 4V6I 34 BE 60S ribosomal protein rpL11 (L5p) 4932
167 4V7H 34 BJ 60S ribosomal protein L11(B) 5541
168 4V5Z 56 Bd 60S Ribosomal protein L11 9612
169 2NOQ 8 H 60S ribosomal protein L11-B 4932
170 4V4B 29 BJ 60S ribosomal protein L11 4932
171 1ML5 31 g 50S RIBOSOMAL PROTEIN L5 562
172 4V42 31 BG 50S RIBOSOMAL PROTEIN L5 274