Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 803
95 % 36 68 636
90 % 36 68 663
70 % 36 68 705
50 % 36 174 198
40 % 36 174 217
30 % 44 506 29
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57975
95 % 1 1 40414
90 % 1 1 38488
70 % 36 68 697
50 % 36 170 205
40 % 36 170 227
30 % 36 170 233
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 403
95 % 36 74 563
90 % 36 74 591
70 % 36 74 623
50 % 36 74 672
40 % 36 74 711
30 % 43 488 35
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 401
95 % 36 74 561
90 % 36 74 589
70 % 36 74 620
50 % 36 76 651
40 % 36 76 693
30 % 36 79 665
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 451
95 % 36 68 637
90 % 36 68 665
70 % 36 68 707
50 % 36 70 729
40 % 36 70 766
30 % 36 70 765
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2128
95 % 36 68 635
90 % 36 68 661
70 % 36 68 703
50 % 36 68 754
40 % 36 72 737
30 % 36 72 736
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 453
95 % 36 68 640
90 % 36 68 667
70 % 36 68 711
50 % 36 70 730
40 % 36 70 767
30 % 36 71 749
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 462
95 % 36 68 633
90 % 36 68 659
70 % 36 68 700
50 % 36 68 751
40 % 36 68 785
30 % 36 173 226
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 410
95 % 36 74 569
90 % 36 74 596
70 % 36 74 630
50 % 36 76 654
40 % 36 78 670
30 % 43 397 57
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 407
95 % 36 74 566
90 % 36 74 594
70 % 36 74 628
50 % 36 178 191
40 % 36 178 208
30 % 36 178 221
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 434
95 % 34 70 615
90 % 34 70 641
70 % 34 70 680
50 % 34 70 731
40 % 34 70 769
30 % 34 70 767
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 412
95 % 36 74 570
90 % 36 74 597
70 % 36 74 631
50 % 36 74 678
40 % 36 74 715
30 % 36 74 715
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 449
95 % 36 68 634
90 % 36 68 660
70 % 36 68 701
50 % 36 68 752
40 % 36 70 763
30 % 36 71 746
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 455
95 % 36 68 642
90 % 36 68 669
70 % 36 68 713
50 % 36 68 759
40 % 36 68 790
30 % 36 68 788
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61284
95 % 3 5 13704
90 % 3 5 13456
70 % 3 5 12623
50 % 3 5 11286
40 % 3 5 10238
30 % 3 5 8890
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67529
95 % 1 1 46810
90 % 1 1 44529
70 % 3 21 2798
50 % 7 30 1870
40 % 7 127 292
30 % 26 150 262
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 456
95 % 36 68 643
90 % 36 68 670
70 % 36 68 716
50 % 36 69 739
40 % 36 69 779
30 % 36 69 778
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68924
95 % 36 68 644
90 % 36 68 671
70 % 36 68 717
50 % 36 171 201
40 % 36 171 224
30 % 36 171 231
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 454
95 % 36 68 641
90 % 36 68 668
70 % 36 68 712
50 % 36 68 758
40 % 36 68 789
30 % 36 167 237
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 448
95 % 36 68 632
90 % 36 68 658
70 % 36 68 699
50 % 36 68 750
40 % 36 172 221
30 % 44 497 32
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2112
95 % 36 68 630
90 % 36 68 656
70 % 36 68 696
50 % 36 169 204
40 % 36 171 223
30 % 36 171 230
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51315
95 % 36 74 552
90 % 36 74 582
70 % 36 74 615
50 % 36 74 666
40 % 36 178 205
30 % 36 178 218
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9655
95 % 36 74 556
90 % 36 74 586
70 % 36 74 619
50 % 36 74 668
40 % 36 76 691
30 % 37 78 674
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 402
95 % 36 74 562
90 % 36 74 590
70 % 36 74 621
50 % 36 74 670
40 % 37 178 207
30 % 37 178 220
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2139
95 % 3 21 2768
90 % 36 68 664
70 % 36 68 706
50 % 51 105 311
40 % 58 120 281
30 % 58 122 278
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60207
95 % 1 1 41656
90 % 1 7 9757
70 % 3 27 2078
50 % 36 74 671
40 % 36 79 658
30 % 36 79 668
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 404
95 % 36 74 564
90 % 36 74 592
70 % 36 74 626
50 % 36 74 676
40 % 37 77 681
30 % 37 78 677

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 6 D 50S ribosomal protein L5P 2238
2 1VQO 7 D 50S ribosomal protein L5P 2238
3 1VQ8 7 D 50S ribosomal protein L5P 2238
4 1S72 6 D 50S ribosomal protein L5P 2238
5 1JJ2 6 D RIBOSOMAL PROTEIN L5 2238
6 1YHQ 6 D 50S ribosomal protein L5P 2238
7 1VQP 7 D 50S ribosomal protein L5P 2238
8 4XXB 1 A 60S ribosomal protein L11 9606
9 1VQM 7 D 50S ribosomal protein L5P 2238
10 3CC2 4 D 50S ribosomal protein L5P 2238
11 1VQL 7 D 50S ribosomal protein L5P 2238
12 1VQK 7 D 50S ribosomal protein L5P 2238
13 1VQN 8 D 50S ribosomal protein L5P 2238
14 1YIJ 6 D 50S ribosomal protein L5P 2238
15 1YI2 6 D 50S ribosomal protein L5P 2238
16 1VQ9 7 D 50S ribosomal protein L5P 2238
17 1VQ7 7 D 50S ribosomal protein L5P 2238
18 3CCM 4 D 50S ribosomal protein L5P 2238
19 1VQ5 7 D 50S ribosomal protein L5P 2238
20 3CCJ 4 D 50S ribosomal protein L5P 2238
21 3CC7 4 D 50S ribosomal protein L5P 2238
22 1YIT 10 D 50S RIBOSOMAL PROTEIN L5P 2238
23 3CCE 4 D 50S ribosomal protein L5P 2238
24 3G6E 5 D 50S ribosomal protein L5P 2238
25 3CPW 6 D 50S ribosomal protein L5P 2238
26 3CCU 4 D 50S ribosomal protein L5P 2238
27 1VQ6 8 D 50S ribosomal protein L5P 2238
28 1M90 7 F RIBOSOMAL PROTEIN L5 2238
29 3CCL 4 D 50S ribosomal protein L5P 2238
30 1YJW 10 D 50S RIBOSOMAL PROTEIN L5P 2238
31 1YJ9 6 D 50S ribosomal protein L5P 2238
32 3CD6 4 D 50S ribosomal protein L5P 2238
33 3CCV 4 D 50S ribosomal protein L5P 2238
34 3CC4 4 D 50S ribosomal protein L5P 2238
35 2OTL 6 D 50S ribosomal protein L5P 2238
36 3G71 5 D 50S ribosomal protein L5P 2238
37 1FFK 6 D RIBOSOMAL PROTEIN L5 2238
38 1VQ4 7 D 50S ribosomal protein L5P 2238
39 1YJN 6 D 50S ribosomal protein L5P 2238
40 3CMA 4 D 50S ribosomal protein L5P 2238
41 3CCS 4 D 50S ribosomal protein L5P 2238
42 3CCQ 4 D 50S ribosomal protein L5P 2238
43 3I56 4 D 50S ribosomal protein L5P 2238
44 3CCR 4 D 50S ribosomal protein L5P 2238
45 2OTJ 6 D 50S ribosomal protein L5P 2238
46 4V88 48 BJ, DJ 60S ribosomal protein L11-A 4932
47 1KQS 8 D RIBOSOMAL PROTEIN L5 2238
48 3OW2 6 D 50S ribosomal protein L5P 2238
49 4U4R 48 M1, m1 60S ribosomal protein L11-B 4932
50 3CXC 7 D RIBOSOMAL PROTEIN L5 2238
51 1QVG 7 D 50S ribosomal protein L5P 2238
52 3CME 4 D 50S ribosomal protein L5P 2238
53 2QEX 6 D 50S ribosomal protein L5P 2238
54 4U3U 48 M1, m1 60S ribosomal protein L11-B 4932
55 1KC8 6 F RIBOSOMAL PROTEIN L5 2238
56 4U3M 48 M1, m1 60S ribosomal protein L11-B 4932
57 1N8R 6 F 50S ribosomal protein L5P 2238
58 4U3N 48 M1, m1 60S ribosomal protein L11-B 4932
59 1Q81 7 F 50S ribosomal protein L5P 2238
60 1Q82 7 F 50S ribosomal protein L5P 2238
61 1QVF 7 D 50S ribosomal protein L5P 2238
62 4U52 48 M1, m1 60S ribosomal protein L11-B 4932
63 4U4Q 48 M1, m1 60S ribosomal protein L11-B 4932
64 1NJI 6 F 50S ribosomal protein L5P 2238
65 4U6F 48 M1, m1 60S ribosomal protein L11-B 4932
66 4U4U 48 M1, m1 60S ribosomal protein L11-B 4932
67 1K73 6 F RIBOSOMAL PROTEIN L5 2238
68 4U4Z 48 M1, m1 60S ribosomal protein L11-B 4932
69 4U4Y 48 M1, m1 60S ribosomal protein L11-B 4932
70 4U4N 48 M1, m1 60S ribosomal protein L11-B 4932
71 4U55 48 M1, m1 60S ribosomal protein L11-B 4932
72 1K9M 6 F RIBOSOMAL PROTEIN L5 2238
73 1KD1 6 F RIBOSOMAL PROTEIN L5 2238
74 5DAT 48 M1, m1 60S ribosomal protein L11-B 4932
75 3I55 5 D 50S ribosomal protein L5P 2238
76 5I4L 48 M1, m1 60S ribosomal protein L11-B 4932
77 4U51 48 M1, m1 60S ribosomal protein L11-B 4932
78 1K8A 6 F RIBOSOMAL PROTEIN L5 2238
79 4U53 48 M1, m1 60S ribosomal protein L11-B 4932
80 1Q86 7 F 50S ribosomal protein L5P 2238
81 4U50 48 M1, m1 60S ribosomal protein L11-B 4932
82 5LYB 48 M1, m1 60S ribosomal protein L11-B 4932
83 1M1K 6 F RIBOSOMAL PROTEIN L5 2238
84 3G4S 5 D 50S ribosomal protein L5P 2238
85 1W2B 9 D 50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5 2238
86 4U56 48 M1, m1 60S ribosomal protein L11-B 4932
87 2QA4 6 D 50S ribosomal protein L5P 2238
88 5TGA 48 M1, m1 60S ribosomal protein L11-B 4932
89 1Q7Y 7 F 50S ribosomal protein L5P 2238
90 5FCJ 48 M1, m1 60S ribosomal protein L11-A 4932
91 4U4O 48 M1, m1 60S ribosomal protein L11-B 4932
92 5DGV 48 M1, m1 60S ribosomal protein L11-B 4932
93 5DGE 48 M1, m1 60S ribosomal protein L11-A 4932
94 4V8P 25 BD, CD, ED, GD 60S RIBOSOMAL PROTEIN L11 5911
95 5FCI 48 M1, m1 60S ribosomal protein L11-A 4932
96 5AFF 3 C RIBOSOMAL PROTEIN L11 209285
97 5DC3 48 M1, m1 60S ribosomal protein L11-B 4932
98 5DGF 48 M1, m1 60S ribosomal protein L11-B 4932
99 5TGM 48 M1, m1 60S ribosomal protein L11-B 4932
100 4V7R 42 BK, DK 60S ribosomal protein L11-A 4932
101 4V4P 7 AG 50S ribosomal protein L5 274
102 4V4R 31 BG 50S ribosomal protein L5 274
103 4V4S 31 BG 50S ribosomal protein L5 274
104 4V4T 30 BG 50S ribosomal protein L5 274
105 5MC6 47 AG 60S ribosomal protein L11-A 4932
106 5H4P 12 J 60S ribosomal protein L11-A 4932
107 5M1J 56 J5 60S ribosomal protein L11-A 4932
108 5LZS 10 J Uncharacterized protein 9986
109 5LZT 10 J uL5 9986
110 5LZU 10 J uL5 9986
111 5LZV 10 J uL5 9986
112 5LZW 10 J uL5 9986
113 5LZX 10 J uL5 9986
114 5LZY 10 J uL5 9986
115 5LZZ 10 J uL5 9986
116 5T62 14 M 60S ribosomal protein L11-A 4932
117 5T6R 13 M 60S ribosomal protein L11-A 4932
118 5T2A 11 K uL5 5661
119 5T2C 44 q 60S ribosomal protein L11 9606
120 5JUO 15 O uL5 (yeast L11) 4932
121 5JUP 15 O uL5 (yeast L11) 4932
122 5JUS 15 O uL5 (yeast L11) 4932
123 5JUT 15 O uL5 (yeast L11) 4932
124 5JUU 15 O uL5 (yeast L11) 4932
125 5JCS 19 J 60S ribosomal protein L11-A 4932
126 5IT7 13 JJ KLLA0F08261p 28985
127 3JCT 10 J 60S ribosomal protein L11-A 4932
128 3JCS 12 D ribosomal protein L5 5661
129 5GAK 31 M 60S ribosomal protein L11-A 4932
130 5FL8 10 J 60S ribosomal protein L11-A 4932
131 5APN 13 J 60S ribosomal protein L11-A 4932
132 5APO 13 J 60S ribosomal protein L11-A 4932
133 3JBN 72 AG 60S ribosomal protein uL5 5833
134 3JBO 72 AG 60S ribosomal protein uL5 5833
135 3JBP 72 AG 60S ribosomal protein uL5 5833
136 3JAN 5 J Ribosomal protein uL5 SEE REMARK 999 9986
137 3JAJ 5 J Ribosomal protein uL5 SEE REMARK 999 9986
138 3JAG 10 J uL5 9986
139 3JAH 10 J uL5 9986
140 3JAI 10 J uL5 9986
141 4UG0 13 LJ 60S RIBOSOMAL PROTEIN L11 9606
142 5AJ0 12 AJ 60S ribosomal protein L11 9606
143 3J92 10 J uL5 9986
144 4D67 10 J 60S RIBOSOMAL PROTEIN L11 9986
145 4D5Y 10 J 60S RIBOSOMAL PROTEIN UL5 9986
146 4V3P 38 LE Ribosomal protein L11 4565
147 3J7O 13 J Ribosomal protein uL5 9823
148 3J7P 13 J Ribosomal protein uL5 9823
149 3J7Q 13 J Ribosomal protein uL5 9823
150 3J7R 13 J Ribosomal protein uL5 9823
151 4UJC 16 BJ 60S RIBOSOMAL PROTEIN L11 9986
152 4UJD 13 AJ 60S RIBOSOMAL PROTEIN L11 9986
153 3J79 7 G 60S ribosomal protein uL5 5833
154 3J77 11 61 60S ribosomal protein L11 4932
155 3J78 11 61 60S ribosomal protein L11 4932
156 3J6X 14 51 60S ribosomal protein L11 4932
157 3J6Y 14 51 60S ribosomal protein L11 4932
158 4UJE 47 CJ 60S RIBOSOMAL PROTEIN L11 9986
159 4V91 13 J UL5 RIBOSOMAL PROTEIN UL5 28985
160 4V7F 8 E 60S ribosomal protein L11 4932
161 4V7E 42 CJ 60S ribosomal protein L5 4565
162 4V8Y 44 BJ 60S RIBOSOMAL PROTEIN L11-A 4932
163 4V8Z 44 BJ 60S RIBOSOMAL PROTEIN L11-A 4932
164 4V4N 48 AE 50S ribosomal protein L5P SEE REMARK 999 2190
165 4V6W 79 CJ 60S ribosomal protein L11 7227
166 4V6X 79 CJ 60S ribosomal protein L11 9606
167 4V8M 45 BL 60S RIBOSOMAL PROTEIN L11, PUTATIVE 185431
168 4V6U 40 BE 50S ribosomal protein L5P 2261
169 4V8T 10 J 60S RIBOSOMAL PROTEIN L11-B 4932
170 4ADX 14 D RPL5 145262
171 3J0Q 17 k Ribosomal protein L11 9986
172 4V6I 34 BE 60S ribosomal protein rpL11 (L5p) 4932
173 4V7H 34 BJ 60S ribosomal protein L11(B) 5541
174 4V5Z 56 Bd 60S Ribosomal protein L11 9612
175 2NOQ 8 H 60S ribosomal protein L11-B 4932
176 4V4B 29 BJ 60S ribosomal protein L11 4932
177 1ML5 31 g 50S RIBOSOMAL PROTEIN L5 562
178 4V42 31 BG 50S RIBOSOMAL PROTEIN L5 274