Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 44 865
95 % 35 68 698
90 % 35 68 728
70 % 35 68 780
50 % 35 180 201
40 % 43 539 20
30 % 43 539 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61028
95 % 1 1 42582
90 % 1 1 40466
70 % 35 68 771
50 % 35 176 205
40 % 35 176 228
30 % 35 176 240
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 447
95 % 35 74 619
90 % 35 74 647
70 % 35 74 690
50 % 35 74 743
40 % 35 74 778
30 % 42 519 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 445
95 % 35 74 617
90 % 35 74 645
70 % 35 74 687
50 % 35 76 718
40 % 35 76 753
30 % 35 79 717
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 513
95 % 35 68 700
90 % 35 68 731
70 % 35 68 783
50 % 35 70 793
40 % 35 70 830
30 % 35 70 817
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2259
95 % 35 68 697
90 % 35 68 727
70 % 35 68 778
50 % 35 68 822
40 % 35 72 805
30 % 35 72 796
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 514
95 % 35 68 702
90 % 35 68 733
70 % 35 68 785
50 % 35 70 794
40 % 35 70 831
30 % 35 71 807
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 67 523
95 % 35 68 695
90 % 35 68 725
70 % 35 68 775
50 % 35 68 819
40 % 35 68 856
30 % 35 179 231
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 452
95 % 35 74 623
90 % 35 74 651
70 % 35 74 697
50 % 35 76 723
40 % 35 78 734
30 % 42 422 59
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 451
95 % 35 74 622
90 % 35 74 650
70 % 35 74 695
50 % 35 183 199
40 % 35 184 217
30 % 35 184 227
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 70 483
95 % 33 70 668
90 % 33 70 694
70 % 33 70 746
50 % 33 70 795
40 % 33 70 832
30 % 33 70 819
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 453
95 % 35 74 624
90 % 35 74 652
70 % 35 74 698
50 % 35 74 748
40 % 42 384 58
30 % 42 410 65
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 510
95 % 35 68 696
90 % 35 68 726
70 % 35 68 776
50 % 35 68 820
40 % 35 70 828
30 % 35 71 805
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 516
95 % 35 68 704
90 % 35 68 735
70 % 35 68 787
50 % 35 68 827
40 % 35 68 860
30 % 35 68 844
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64470
95 % 3 5 14502
90 % 3 5 14231
70 % 3 5 13370
50 % 3 5 11887
40 % 3 5 10785
30 % 3 5 9353
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70904
95 % 1 1 49189
90 % 1 1 46695
70 % 3 21 2958
50 % 7 30 1979
40 % 7 134 287
30 % 26 157 261
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 517
95 % 35 68 705
90 % 35 68 736
70 % 35 68 788
50 % 35 69 809
40 % 35 69 844
30 % 35 69 833
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72343
95 % 35 68 706
90 % 35 68 737
70 % 35 68 789
50 % 35 177 203
40 % 35 177 225
30 % 35 177 236
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 515
95 % 35 68 703
90 % 35 68 734
70 % 35 68 786
50 % 35 68 826
40 % 35 68 859
30 % 35 173 244
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 509
95 % 35 68 694
90 % 35 68 723
70 % 35 68 773
50 % 35 68 818
40 % 35 178 222
30 % 43 530 35
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2242
95 % 35 68 692
90 % 35 68 721
70 % 35 68 770
50 % 35 175 204
40 % 35 177 224
30 % 35 177 235
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54106
95 % 35 74 609
90 % 35 74 639
70 % 35 74 683
50 % 35 74 736
40 % 35 184 215
30 % 35 184 225
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 10234
95 % 35 74 613
90 % 35 74 643
70 % 35 74 685
50 % 35 74 738
40 % 35 76 751
30 % 36 78 727
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 446
95 % 35 74 618
90 % 35 74 646
70 % 35 74 688
50 % 35 74 741
40 % 36 184 216
30 % 36 184 226
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2272
95 % 3 21 2920
90 % 35 68 730
70 % 35 68 782
50 % 50 105 351
40 % 57 124 285
30 % 57 126 289
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63338
95 % 1 1 43875
90 % 1 7 10352
70 % 3 27 2210
50 % 35 74 742
40 % 35 79 723
30 % 35 79 719
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 449
95 % 35 74 620
90 % 35 74 648
70 % 35 74 693
50 % 35 74 747
40 % 36 77 745
30 % 36 78 731

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 6 D 50S ribosomal protein L5P 2238
2 1VQO 7 D 50S ribosomal protein L5P 2238
3 1VQ8 7 D 50S ribosomal protein L5P 2238
4 1S72 6 D 50S ribosomal protein L5P 2238
5 1JJ2 6 D RIBOSOMAL PROTEIN L5 2238
6 1YHQ 6 D 50S ribosomal protein L5P 2238
7 1VQP 7 D 50S ribosomal protein L5P 2238
8 4XXB 1 A 60S ribosomal protein L11 9606
9 1VQM 7 D 50S ribosomal protein L5P 2238
10 3CC2 4 D 50S ribosomal protein L5P 2238
11 1VQL 7 D 50S ribosomal protein L5P 2238
12 1VQK 7 D 50S ribosomal protein L5P 2238
13 1VQN 8 D 50S ribosomal protein L5P 2238
14 1YIJ 6 D 50S ribosomal protein L5P 2238
15 1YI2 6 D 50S ribosomal protein L5P 2238
16 1VQ9 7 D 50S ribosomal protein L5P 2238
17 1VQ7 7 D 50S ribosomal protein L5P 2238
18 3CCM 4 D 50S ribosomal protein L5P 2238
19 1VQ5 7 D 50S ribosomal protein L5P 2238
20 3CC7 4 D 50S ribosomal protein L5P 2238
21 1YIT 10 D 50S RIBOSOMAL PROTEIN L5P 2238
22 3CCE 4 D 50S ribosomal protein L5P 2238
23 3G6E 5 D 50S ribosomal protein L5P 2238
24 3CPW 6 D 50S ribosomal protein L5P 2238
25 3CCU 4 D 50S ribosomal protein L5P 2238
26 1VQ6 8 D 50S ribosomal protein L5P 2238
27 1M90 7 F RIBOSOMAL PROTEIN L5 2238
28 3CCL 4 D 50S ribosomal protein L5P 2238
29 1YJW 10 D 50S RIBOSOMAL PROTEIN L5P 2238
30 1YJ9 6 D 50S ribosomal protein L5P 2238
31 3CD6 4 D 50S ribosomal protein L5P 2238
32 3CCV 4 D 50S ribosomal protein L5P 2238
33 3CC4 4 D 50S ribosomal protein L5P 2238
34 2OTL 6 D 50S ribosomal protein L5P 2238
35 3G71 5 D 50S ribosomal protein L5P 2238
36 1FFK 6 D RIBOSOMAL PROTEIN L5 2238
37 1VQ4 7 D 50S ribosomal protein L5P 2238
38 1YJN 6 D 50S ribosomal protein L5P 2238
39 3CMA 4 D 50S ribosomal protein L5P 2238
40 3CCS 4 D 50S ribosomal protein L5P 2238
41 3CCQ 4 D 50S ribosomal protein L5P 2238
42 3I56 4 D 50S ribosomal protein L5P 2238
43 3CCR 4 D 50S ribosomal protein L5P 2238
44 2OTJ 6 D 50S ribosomal protein L5P 2238
45 4V88 48 BJ, DJ 60S ribosomal protein L11-A 4932
46 1KQS 8 D RIBOSOMAL PROTEIN L5 2238
47 3OW2 6 D 50S ribosomal protein L5P 2238
48 4U4R 48 M1, m1 60S ribosomal protein L11-B 4932
49 3CXC 7 D RIBOSOMAL PROTEIN L5 2238
50 1QVG 7 D 50S ribosomal protein L5P 2238
51 3CME 4 D 50S ribosomal protein L5P 2238
52 2QEX 6 D 50S ribosomal protein L5P 2238
53 4U3U 48 M1, m1 60S ribosomal protein L11-B 4932
54 5TBW 13 CM, s 60S ribosomal protein L11-B 4932
55 1KC8 6 F RIBOSOMAL PROTEIN L5 2238
56 4U3M 48 M1, m1 60S ribosomal protein L11-B 4932
57 1N8R 6 F 50S ribosomal protein L5P 2238
58 4U3N 48 M1, m1 60S ribosomal protein L11-B 4932
59 1Q81 7 F 50S ribosomal protein L5P 2238
60 1Q82 7 F 50S ribosomal protein L5P 2238
61 1QVF 7 D 50S ribosomal protein L5P 2238
62 4U52 48 M1, m1 60S ribosomal protein L11-B 4932
63 4U4Q 48 M1, m1 60S ribosomal protein L11-B 4932
64 1NJI 6 F 50S ribosomal protein L5P 2238
65 4U6F 48 M1, m1 60S ribosomal protein L11-B 4932
66 4U4U 48 M1, m1 60S ribosomal protein L11-B 4932
67 1K73 6 F RIBOSOMAL PROTEIN L5 2238
68 4U4Z 48 M1, m1 60S ribosomal protein L11-B 4932
69 4U4Y 48 M1, m1 60S ribosomal protein L11-B 4932
70 4U4N 48 M1, m1 60S ribosomal protein L11-B 4932
71 4U55 48 M1, m1 60S ribosomal protein L11-B 4932
72 1K9M 6 F RIBOSOMAL PROTEIN L5 2238
73 1KD1 6 F RIBOSOMAL PROTEIN L5 2238
74 5DAT 48 M1, m1 60S ribosomal protein L11-B 4932
75 3I55 5 D 50S ribosomal protein L5P 2238
76 5I4L 48 M1, m1 60S ribosomal protein L11-B 4932
77 4U51 48 M1, m1 60S ribosomal protein L11-B 4932
78 1K8A 6 F RIBOSOMAL PROTEIN L5 2238
79 4U53 48 M1, m1 60S ribosomal protein L11-B 4932
80 1Q86 7 F 50S ribosomal protein L5P 2238
81 4U50 48 M1, m1 60S ribosomal protein L11-B 4932
82 5LYB 48 M1, m1 60S ribosomal protein L11-B 4932
83 1M1K 6 F RIBOSOMAL PROTEIN L5 2238
84 3G4S 5 D 50S ribosomal protein L5P 2238
85 3CCJ 4 D 50S ribosomal protein L5P 2238
86 1W2B 9 D 50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5 2238
87 4U56 48 M1, m1 60S ribosomal protein L11-B 4932
88 2QA4 6 D 50S ribosomal protein L5P 2238
89 5TGA 48 M1, m1 60S ribosomal protein L11-B 4932
90 5MEI 13 CM, s 60S ribosomal protein L11-B 4932
91 1Q7Y 7 F 50S ribosomal protein L5P 2238
92 5FCJ 48 M1, m1 60S ribosomal protein L11-A 4932
93 4U4O 48 M1, m1 60S ribosomal protein L11-B 4932
94 5DGV 48 M1, m1 60S ribosomal protein L11-B 4932
95 5DGE 48 M1, m1 60S ribosomal protein L11-A 4932
96 4V8P 25 BD, CD, ED, GD 60S RIBOSOMAL PROTEIN L11 5911
97 5FCI 48 M1, m1 60S ribosomal protein L11-A 4932
98 5AFF 3 C RIBOSOMAL PROTEIN L11 209285
99 5DC3 48 M1, m1 60S ribosomal protein L11-B 4932
100 5DGF 48 M1, m1 60S ribosomal protein L11-B 4932
101 5TGM 48 M1, m1 60S ribosomal protein L11-B 4932
102 4V7R 42 BK, DK 60S ribosomal protein L11-A 4932
103 4V4P 7 AG 50S ribosomal protein L5 274
104 4V4R 31 BG 50S ribosomal protein L5 274
105 4V4S 31 BG 50S ribosomal protein L5 274
106 4V4T 30 BG 50S ribosomal protein L5 274
107 5XY3 13 J 60S ribosomal protein L11, putative 5722
108 5XXB 13 J Ribosomal protein uL5 5811
109 5UMD 7 G 60S ribosomal protein L11a, putative 5833
110 5MC6 47 AG 60S ribosomal protein L11-A 4932
111 5H4P 12 J 60S ribosomal protein L11-A 4932
112 5M1J 56 J5 60S ribosomal protein L11-A 4932
113 5LZS 10 J Uncharacterized protein 9986
114 5LZT 10 J uL5 9986
115 5LZU 10 J uL5 9986
116 5LZV 10 J uL5 9986
117 5LZW 10 J uL5 9986
118 5LZX 10 J uL5 9986
119 5LZY 10 J uL5 9986
120 5LZZ 10 J uL5 9986
121 5T62 14 M 60S ribosomal protein L11-A 4932
122 5T6R 13 M 60S ribosomal protein L11-A 4932
123 5T2A 11 K uL5 5661
124 5T2C 44 q 60S ribosomal protein L11 9606
125 5LKS 13 LJ 60S ribosomal protein L11 9606
126 5JUO 15 O uL5 (yeast L11) 4932
127 5JUP 15 O uL5 (yeast L11) 4932
128 5JUS 15 O uL5 (yeast L11) 4932
129 5JUT 15 O uL5 (yeast L11) 4932
130 5JUU 15 O uL5 (yeast L11) 4932
131 5JCS 19 J 60S ribosomal protein L11-A 4932
132 5IT7 13 JJ KLLA0F08261p 28985
133 3JCT 10 J 60S ribosomal protein L11-A 4932
134 3JCS 12 D ribosomal protein L5 5661
135 5GAK 31 M 60S ribosomal protein L11-A 4932
136 5FL8 10 J 60S ribosomal protein L11-A 4932
137 5APN 13 J 60S ribosomal protein L11-A 4932
138 5APO 13 J 60S ribosomal protein L11-A 4932
139 3JBN 72 AG 60S ribosomal protein uL5 5833
140 3JBO 72 AG 60S ribosomal protein uL5 5833
141 3JBP 72 AG 60S ribosomal protein uL5 5833
142 3JAN 5 J Ribosomal protein uL5 SEE REMARK 999 9986
143 3JAJ 5 J Ribosomal protein uL5 SEE REMARK 999 9986
144 3JAG 10 J uL5 9986
145 3JAH 10 J uL5 9986
146 3JAI 10 J uL5 9986
147 4UG0 13 LJ 60S RIBOSOMAL PROTEIN L11 9606
148 5AJ0 12 AJ 60S ribosomal protein L11 9606
149 3J92 10 J uL5 9986
150 4D67 10 J 60S RIBOSOMAL PROTEIN L11 9986
151 4D5Y 10 J 60S RIBOSOMAL PROTEIN UL5 9986
152 4V3P 38 LE Ribosomal protein L11 4565
153 3J7O 13 J Ribosomal protein uL5 9823
154 3J7P 13 J Ribosomal protein uL5 9823
155 3J7Q 13 J Ribosomal protein uL5 9823
156 3J7R 13 J Ribosomal protein uL5 9823
157 4UJC 16 BJ 60S RIBOSOMAL PROTEIN L11 9986
158 4UJD 13 AJ 60S RIBOSOMAL PROTEIN L11 9986
159 3J79 7 G 60S ribosomal protein uL5 5833
160 3J77 11 61 60S ribosomal protein L11 4932
161 3J78 11 61 60S ribosomal protein L11 4932
162 3J6X 14 51 60S ribosomal protein L11 4932
163 3J6Y 14 51 60S ribosomal protein L11 4932
164 4UJE 47 CJ 60S RIBOSOMAL PROTEIN L11 9986
165 4V91 13 J UL5 RIBOSOMAL PROTEIN UL5 28985
166 4V7F 8 E 60S ribosomal protein L11 4932
167 4V7E 42 CJ 60S ribosomal protein L5 4565
168 4V8Y 44 BJ 60S RIBOSOMAL PROTEIN L11-A 4932
169 4V8Z 44 BJ 60S RIBOSOMAL PROTEIN L11-A 4932
170 4V4N 48 AE 50S ribosomal protein L5P SEE REMARK 999 2190
171 4V6W 79 CJ 60S ribosomal protein L11 7227
172 4V6X 79 CJ 60S ribosomal protein L11 9606
173 4V8M 45 BL 60S RIBOSOMAL PROTEIN L11, PUTATIVE 185431
174 4V6U 40 BE 50S ribosomal protein L5P 2261
175 4V8T 10 J 60S RIBOSOMAL PROTEIN L11-B 4932
176 4ADX 14 D RPL5 145262
177 3J0Q 17 k Ribosomal protein L11 9986
178 4V6I 34 BE 60S ribosomal protein rpL11 (L5p) 4932
179 4V7H 34 BJ 60S ribosomal protein L11(B) 5541
180 4V5Z 56 Bd 60S Ribosomal protein L11 9612
181 2NOQ 8 H 60S ribosomal protein L11-B 4932
182 4V4B 29 BJ 60S ribosomal protein L11 4932
183 1ML5 31 g 50S RIBOSOMAL PROTEIN L5 562
184 4V42 31 BG 50S RIBOSOMAL PROTEIN L5 274