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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 269 Members. Sequence cutoff: 30% Cluster size: 127 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 6 D 50S ribosomal protein L5P 272569  
2 1VQO 7 D 50S ribosomal protein L5P 2238  
3 1VQ8 7 D 50S ribosomal protein L5P 2238  
4 1S72 6 D 50S ribosomal protein L5P 2238  
5 1JJ2 6 D RIBOSOMAL PROTEIN L5 2238  
6 1YHQ 6 D 50S ribosomal protein L5P 2238  
7 1VQP 7 D 50S ribosomal protein L5P 2238  
8 1VQM 7 D 50S ribosomal protein L5P 2238  
9 3CC2 4 D 50S ribosomal protein L5P 2238  
10 1VQL 7 D 50S ribosomal protein L5P 2238  
11 1VQK 7 D 50S ribosomal protein L5P 2238  
12 1VQN 8 D 50S ribosomal protein L5P 2238  
13 1YIJ 6 D 50S ribosomal protein L5P 2238  
14 1YI2 6 D 50S ribosomal protein L5P 2238  
15 1VQ9 7 D 50S ribosomal protein L5P 2238  
16 1VQ7 7 D 50S ribosomal protein L5P 2238  
17 3CCM 4 D 50S ribosomal protein L5P 2238  
18 1VQ5 7 D 50S ribosomal protein L5P 2238  
19 3CCJ 4 D 50S ribosomal protein L5P 2238  
20 3CC7 4 D 50S ribosomal protein L5P 2238  
21 1YIT 10 D 50S RIBOSOMAL PROTEIN L5P 2238  
22 3CCE 4 D 50S ribosomal protein L5P 2238  
23 3G6E 5 D 50S ribosomal protein L5P 2238  
24 3CPW 6 D 50S ribosomal protein L5P 2238  
25 3CCU 4 D 50S ribosomal protein L5P 2238  
26 1VQ6 8 D 50S ribosomal protein L5P 2238  
27 1M90 7 F RIBOSOMAL PROTEIN L5 2238  
28 3CCL 4 D 50S ribosomal protein L5P 2238  
29 1YJW 10 D 50S RIBOSOMAL PROTEIN L5P 2238  
30 1YJ9 6 D 50S ribosomal protein L5P 2238  
31 3CD6 4 D 50S ribosomal protein L5P 2238  
32 3CCV 4 D 50S ribosomal protein L5P 2238  
33 3CC4 4 D 50S ribosomal protein L5P 2238  
34 2OTL 6 D 50S ribosomal protein L5P 2238  
35 3G71 5 D 50S ribosomal protein L5P 2238  
36 1FFK 6 D RIBOSOMAL PROTEIN L5 2238  
37 1VQ4 7 D 50S ribosomal protein L5P 2238  
38 1YJN 6 D 50S ribosomal protein L5P 2238  
39 3CMA 4 D 50S ribosomal protein L5P 2238  
40 3CCS 4 D 50S ribosomal protein L5P 2238  
41 3CCQ 4 D 50S ribosomal protein L5P 2238  
42 3I56 4 D 50S ribosomal protein L5P 2238  
43 3CCR 4 D 50S ribosomal protein L5P 2238  
44 2OTJ 6 D 50S ribosomal protein L5P 2238  
45 4V88 48 BJ, DJ 60S ribosomal protein L11-A 559292  
46 1KQS 8 D RIBOSOMAL PROTEIN L5 2238  
47 3OW2 6 D 50S ribosomal protein L5P 2238  
48 4U4R 48 M1, m1 60S ribosomal protein L11-B 559292  
49 3CXC 7 D RIBOSOMAL PROTEIN L5 2238  
50 1QVG 7 D 50S ribosomal protein L5P 2238  
51 3CME 4 D 50S ribosomal protein L5P 2238  
52 2QEX 6 D 50S ribosomal protein L5P 2238  
53 4U3U 48 M1, m1 60S ribosomal protein L11-B 559292  
54 1KC8 6 F RIBOSOMAL PROTEIN L5 2238  
55 4U3M 48 M1, m1 60S ribosomal protein L11-B 559292  
56 1N8R 6 F 50S ribosomal protein L5P 2238  
57 4U3N 48 M1, m1 60S ribosomal protein L11-B 559292  
58 1Q81 7 F 50S ribosomal protein L5P 2238  
59 1Q82 7 F 50S ribosomal protein L5P 2238  
60 1QVF 7 D 50S ribosomal protein L5P 2238  
61 4U52 48 M1, m1 60S ribosomal protein L11-B 559292  
62 4U4Q 48 M1, m1 60S ribosomal protein L11-B 559292  
63 1NJI 6 F 50S ribosomal protein L5P 2238  
64 4U6F 48 M1, m1 60S ribosomal protein L11-B 559292  
65 4U4U 48 M1, m1 60S ribosomal protein L11-B 559292  
66 1K73 6 F RIBOSOMAL PROTEIN L5 2238  
67 4U4Z 48 M1, m1 60S ribosomal protein L11-B 559292  
68 4U4Y 48 M1, m1 60S ribosomal protein L11-B 559292  
69 4U4N 48 M1, m1 60S ribosomal protein L11-B 559292  
70 4U55 48 M1, m1 60S ribosomal protein L11-B 559292  
71 1K9M 6 F RIBOSOMAL PROTEIN L5 2238  
72 1KD1 6 F RIBOSOMAL PROTEIN L5 2238  
73 3I55 5 D 50S ribosomal protein L5P 2238  
74 4U51 48 M1, m1 60S ribosomal protein L11-B 559292  
75 1K8A 6 F RIBOSOMAL PROTEIN L5 2238  
76 4U53 48 M1, m1 60S ribosomal protein L11-B 559292  
77 1Q86 7 F 50S ribosomal protein L5P 2238  
78 4U50 48 M1, m1 60S ribosomal protein L11-B 559292  
79 1M1K 6 F RIBOSOMAL PROTEIN L5 2238  
80 3G4S 5 D 50S ribosomal protein L5P 2238  
81 1W2B 9 D 50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5 2238  
82 4U56 48 M1, m1 60S ribosomal protein L11-B 559292  
83 2QA4 6 D 50S ribosomal protein L5P 2238  
84 1Q7Y 7 F 50S ribosomal protein L5P 2238  
85 4U4O 48 M1, m1 60S ribosomal protein L11-B 559292  
86 4V8P 25 BD, CD, ED, GD 60S RIBOSOMAL PROTEIN L11 5911  
87 5AFF 3 C RIBOSOMAL PROTEIN L11 209285  
88 4V7R 42 BK, DK 60S ribosomal protein L11-A 4932  
89 4V4P 7 AG 50S ribosomal protein L5 300852  
90 4V4R 31 BG 50S ribosomal protein L5 274  
91 4V4S 31 BG 50S ribosomal protein L5 274  
92 4V4T 30 BG 50S ribosomal protein L5 274  
93 5AJ0 12 AJ 60S ribosomal protein L11 9606  
94 3J92 10 J uL5 9986  
95 4D67 10 J 60S RIBOSOMAL PROTEIN L11 9986  
96 4D5Y 10 J 60S RIBOSOMAL PROTEIN UL5 9986  
97 4V3P 38 LE Ribosomal protein L11 4565  
98 3J7O 13 J Ribosomal protein uL5 9823  
99 3J7P 13 J Ribosomal protein uL5 9823  
100 3J7Q 13 J Ribosomal protein uL5 9823  
101 3J7R 13 J Ribosomal protein uL5 9823  
102 4UJC 16 BJ 60S RIBOSOMAL PROTEIN L11 9986  
103 4UJD 13 AJ 60S RIBOSOMAL PROTEIN L11 9986  
104 3J79 7 G 60S ribosomal protein uL5 36329  
105 3J77 11 61 60S ribosomal protein L11 4932  
106 3J78 11 61 60S ribosomal protein L11 4932  
107 3J6X 14 51 60S ribosomal protein L11 580240  
108 3J6Y 14 51 60S ribosomal protein L11 580240  
109 4UJE 47 CJ 60S RIBOSOMAL PROTEIN L11 9986  
110 4V91 13 J UL5 RIBOSOMAL PROTEIN UL5 28985  
111 4V7F 8 E 60S ribosomal protein L11 4932  
112 4V7E 42 CJ 60S ribosomal protein L5 4565  
113 4V8Y 44 BJ 60S RIBOSOMAL PROTEIN L11-A 4932  
114 4V8Z 44 BJ 60S RIBOSOMAL PROTEIN L11-A 4932  
115 4V4N 48 AE 50S ribosomal protein L5P SEE REMARK 999 2190  
116 4V6W 79 CJ 60S ribosomal protein L11 7227  
117 4V6X 79 CJ 60S ribosomal protein L11 9606  
118 4V6U 40 BE 50S ribosomal protein L5P 186497  
119 4V8T 10 J 60S RIBOSOMAL PROTEIN L11-B 559292  
120 4ADX 14 D RPL5 187420  
121 3J0Q 17 k Ribosomal protein L11 9986  
122 4V6I 34 BE 60S ribosomal protein rpL11 (L5p) 4932  
123 4V5Z 56 Bd 60S Ribosomal protein L11 9615  
124 2NOQ 8 H 60S ribosomal protein L11-B 4932  
125 4V4B 29 BJ 60S ribosomal protein L11 4932  
126 1ML5 31 g 50S RIBOSOMAL PROTEIN L5 562  
127 4V42 31 BG 50S RIBOSOMAL PROTEIN L5 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 671
95% 36 68 476
90% 36 68 500
70% 36 68 539
50% 36 122 239
40% 36 122 263
30% 41 346 47
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49681
95% 1 1 34826
90% 1 1 33272
70% 36 68 532
50% 36 120 245
40% 36 120 269
30% 36 120 287
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 418
90% 36 74 443
70% 36 74 474
50% 36 74 524
40% 36 74 566
30% 40 338 51
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 416
90% 36 74 441
70% 36 74 471
50% 36 76 499
40% 36 76 540
30% 36 78 524
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 478
90% 36 68 503
70% 36 68 542
50% 36 70 582
40% 36 70 618
30% 36 70 618
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1725
95% 36 68 474
90% 36 68 498
70% 36 68 537
50% 36 68 617
40% 36 70 617
30% 36 71 595
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 480
90% 36 68 505
70% 36 68 544
50% 36 70 585
40% 36 70 622
30% 36 71 598
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 339
95% 36 68 472
90% 36 68 496
70% 36 68 535
50% 36 68 614
40% 36 68 649
30% 36 123 280
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 421
90% 36 74 446
70% 36 74 478
50% 36 76 501
40% 36 78 521
30% 40 296 67
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 420
90% 36 74 445
70% 36 74 477
50% 36 129 222
40% 36 129 248
30% 36 129 264
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 315
95% 34 70 457
90% 34 70 479
70% 34 70 515
50% 34 70 586
40% 34 70 623
30% 34 70 620
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 295
95% 36 74 422
90% 36 74 447
70% 36 74 479
50% 36 74 527
40% 36 74 568
30% 36 74 561
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 473
90% 36 68 497
70% 36 68 536
50% 36 68 615
40% 36 70 616
30% 36 71 594
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 482
90% 36 68 507
70% 36 68 546
50% 36 68 621
40% 36 68 654
30% 36 68 648
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52683
95% 3 5 11617
90% 3 5 11427
70% 3 5 10807
50% 3 5 9703
40% 3 5 8858
30% 3 5 7746
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58398
95% 1 1 40698
90% 1 1 38882
70% 3 21 2329
50% 7 30 1583
40% 7 78 410
30% 26 101 335
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 334
95% 36 68 484
90% 36 68 509
70% 36 68 548
50% 36 69 604
40% 36 69 641
30% 36 69 635
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59698
95% 36 68 485
90% 36 68 510
70% 36 68 550
50% 36 122 240
40% 36 122 264
30% 36 122 282
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 481
90% 36 68 506
70% 36 68 545
50% 36 68 620
40% 36 68 653
30% 36 121 284
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 471
90% 36 68 495
70% 36 68 534
50% 36 68 612
40% 36 121 267
30% 41 341 50
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1708
95% 36 68 469
90% 36 68 493
70% 36 68 531
50% 36 120 244
40% 36 122 262
30% 36 122 281
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43842
95% 36 74 409
90% 36 74 434
70% 36 74 467
50% 36 74 517
40% 36 126 254
30% 36 126 270
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8052
95% 36 74 413
90% 36 74 438
70% 36 74 470
50% 36 74 519
40% 36 76 537
30% 36 77 531
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 417
90% 36 74 442
70% 36 74 472
50% 36 74 522
40% 36 127 253
30% 36 127 269
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1736
95% 3 21 2276
90% 36 68 502
70% 36 68 541
50% 51 95 312
40% 58 105 292
30% 58 107 308
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51697
95% 1 1 35956
90% 1 7 8263
70% 3 27 1709
50% 36 74 523
40% 36 79 508
30% 36 79 516
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 419
90% 36 74 444
70% 36 74 475
50% 36 74 526
40% 37 77 531
30% 37 78 526
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.