Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 742
95 % 36 68 527
90 % 36 68 555
70 % 36 68 609
50 % 36 141 223
40 % 36 141 254
30 % 44 428 34
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54386
95 % 1 1 37981
90 % 1 1 36183
70 % 36 68 603
50 % 36 136 236
40 % 36 136 263
30 % 36 136 275
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 462
90 % 36 74 489
70 % 36 74 534
50 % 36 74 621
40 % 36 74 664
30 % 43 417 41
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 460
90 % 36 74 487
70 % 36 74 531
50 % 36 76 590
40 % 36 76 640
30 % 36 78 615
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 529
90 % 36 68 558
70 % 36 68 611
50 % 36 70 673
40 % 36 70 715
30 % 36 70 717
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1928
95 % 36 68 526
90 % 36 68 554
70 % 36 68 608
50 % 36 68 702
40 % 36 70 712
30 % 36 71 699
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 356
95 % 36 68 530
90 % 36 68 559
70 % 36 68 612
50 % 36 70 675
40 % 36 70 717
30 % 36 71 702
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 365
95 % 36 68 524
90 % 36 68 552
70 % 36 68 606
50 % 36 68 699
40 % 36 68 733
30 % 36 140 266
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 316
95 % 36 74 468
90 % 36 74 496
70 % 36 74 541
50 % 36 76 592
40 % 36 78 613
30 % 43 359 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 314
95 % 36 74 466
90 % 36 74 494
70 % 36 74 539
50 % 36 145 214
40 % 36 145 245
30 % 36 145 256
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 341
95 % 34 70 507
90 % 34 70 532
70 % 34 70 583
50 % 34 70 676
40 % 34 70 718
30 % 34 70 719
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 317
95 % 36 74 469
90 % 36 74 497
70 % 36 74 542
50 % 36 74 627
40 % 36 74 670
30 % 36 74 664
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 352
95 % 36 68 525
90 % 36 68 553
70 % 36 68 607
50 % 36 68 700
40 % 36 70 711
30 % 36 71 698
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 358
95 % 36 68 532
90 % 36 68 561
70 % 36 68 614
50 % 36 68 704
40 % 36 68 736
30 % 36 68 736
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57530
95 % 3 5 12801
90 % 3 5 12559
70 % 3 5 11819
50 % 3 5 10592
40 % 3 5 9666
30 % 3 5 8412
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63523
95 % 1 1 44095
90 % 1 1 42013
70 % 3 21 2574
50 % 7 30 1732
40 % 7 94 377
30 % 26 117 327
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 360
95 % 36 68 534
90 % 36 68 563
70 % 36 68 616
50 % 36 69 690
40 % 36 69 728
30 % 36 69 731
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64867
95 % 36 68 536
90 % 36 68 564
70 % 36 68 617
50 % 36 138 228
40 % 36 138 261
30 % 36 138 272
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 357
95 % 36 68 531
90 % 36 68 560
70 % 36 68 613
50 % 36 68 703
40 % 36 68 735
30 % 36 136 276
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 351
95 % 36 68 523
90 % 36 68 551
70 % 36 68 605
50 % 36 68 698
40 % 36 140 256
30 % 44 423 38
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1904
95 % 36 68 521
90 % 36 68 549
70 % 36 68 602
50 % 36 136 235
40 % 36 138 259
30 % 36 138 271
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48090
95 % 36 74 452
90 % 36 74 480
70 % 36 74 526
50 % 36 74 614
40 % 36 145 242
30 % 36 145 252
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8939
95 % 36 74 455
90 % 36 74 483
70 % 36 74 529
50 % 36 74 616
40 % 36 76 639
30 % 36 77 624
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 461
90 % 36 74 488
70 % 36 74 532
50 % 36 74 619
40 % 37 145 244
30 % 37 145 255
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1939
95 % 3 21 2519
90 % 36 68 557
70 % 36 68 610
50 % 51 96 345
40 % 58 110 307
30 % 58 112 322
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56508
95 % 1 1 39163
90 % 1 7 9098
70 % 3 27 1891
50 % 36 74 620
40 % 36 79 601
30 % 36 79 605
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 312
95 % 36 74 463
90 % 36 74 491
70 % 36 74 536
50 % 36 74 624
40 % 37 77 624
30 % 37 78 618

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 6 D 50S ribosomal protein L5P 2238
2 1VQO 7 D 50S ribosomal protein L5P 2238
3 1VQ8 7 D 50S ribosomal protein L5P 2238
4 1S72 6 D 50S ribosomal protein L5P 2238
5 1JJ2 6 D RIBOSOMAL PROTEIN L5 2238
6 1YHQ 6 D 50S ribosomal protein L5P 2238
7 1VQP 7 D 50S ribosomal protein L5P 2238
8 4XXB 1 A 60S ribosomal protein L11 9606
9 1VQM 7 D 50S ribosomal protein L5P 2238
10 3CC2 4 D 50S ribosomal protein L5P 2238
11 1VQL 7 D 50S ribosomal protein L5P 2238
12 1VQK 7 D 50S ribosomal protein L5P 2238
13 1VQN 8 D 50S ribosomal protein L5P 2238
14 1YIJ 6 D 50S ribosomal protein L5P 2238
15 1YI2 6 D 50S ribosomal protein L5P 2238
16 1VQ9 7 D 50S ribosomal protein L5P 2238
17 1VQ7 7 D 50S ribosomal protein L5P 2238
18 3CCM 4 D 50S ribosomal protein L5P 2238
19 1VQ5 7 D 50S ribosomal protein L5P 2238
20 3CCJ 4 D 50S ribosomal protein L5P 2238
21 3CC7 4 D 50S ribosomal protein L5P 2238
22 1YIT 10 D 50S RIBOSOMAL PROTEIN L5P 2238
23 3CCE 4 D 50S ribosomal protein L5P 2238
24 3G6E 5 D 50S ribosomal protein L5P 2238
25 3CPW 6 D 50S ribosomal protein L5P 2238
26 3CCU 4 D 50S ribosomal protein L5P 2238
27 1VQ6 8 D 50S ribosomal protein L5P 2238
28 1M90 7 F RIBOSOMAL PROTEIN L5 2238
29 3CCL 4 D 50S ribosomal protein L5P 2238
30 1YJW 10 D 50S RIBOSOMAL PROTEIN L5P 2238
31 1YJ9 6 D 50S ribosomal protein L5P 2238
32 3CD6 4 D 50S ribosomal protein L5P 2238
33 3CCV 4 D 50S ribosomal protein L5P 2238
34 3CC4 4 D 50S ribosomal protein L5P 2238
35 2OTL 6 D 50S ribosomal protein L5P 2238
36 3G71 5 D 50S ribosomal protein L5P 2238
37 1FFK 6 D RIBOSOMAL PROTEIN L5 2238
38 1VQ4 7 D 50S ribosomal protein L5P 2238
39 1YJN 6 D 50S ribosomal protein L5P 2238
40 3CMA 4 D 50S ribosomal protein L5P 2238
41 3CCS 4 D 50S ribosomal protein L5P 2238
42 3CCQ 4 D 50S ribosomal protein L5P 2238
43 3I56 4 D 50S ribosomal protein L5P 2238
44 3CCR 4 D 50S ribosomal protein L5P 2238
45 2OTJ 6 D 50S ribosomal protein L5P 2238
46 4V88 48 BJ, DJ 60S ribosomal protein L11-A 4932
47 1KQS 8 D RIBOSOMAL PROTEIN L5 2238
48 3OW2 6 D 50S ribosomal protein L5P 2238
49 4U4R 48 M1, m1 60S ribosomal protein L11-B 4932
50 3CXC 7 D RIBOSOMAL PROTEIN L5 2238
51 1QVG 7 D 50S ribosomal protein L5P 2238
52 3CME 4 D 50S ribosomal protein L5P 2238
53 2QEX 6 D 50S ribosomal protein L5P 2238
54 4U3U 48 M1, m1 60S ribosomal protein L11-B 4932
55 1KC8 6 F RIBOSOMAL PROTEIN L5 2238
56 4U3M 48 M1, m1 60S ribosomal protein L11-B 4932
57 1N8R 6 F 50S ribosomal protein L5P 2238
58 4U3N 48 M1, m1 60S ribosomal protein L11-B 4932
59 1Q81 7 F 50S ribosomal protein L5P 2238
60 1Q82 7 F 50S ribosomal protein L5P 2238
61 1QVF 7 D 50S ribosomal protein L5P 2238
62 4U52 48 M1, m1 60S ribosomal protein L11-B 4932
63 4U4Q 48 M1, m1 60S ribosomal protein L11-B 4932
64 1NJI 6 F 50S ribosomal protein L5P 2238
65 4U6F 48 M1, m1 60S ribosomal protein L11-B 4932
66 4U4U 48 M1, m1 60S ribosomal protein L11-B 4932
67 1K73 6 F RIBOSOMAL PROTEIN L5 2238
68 4U4Z 48 M1, m1 60S ribosomal protein L11-B 4932
69 4U4Y 48 M1, m1 60S ribosomal protein L11-B 4932
70 4U4N 48 M1, m1 60S ribosomal protein L11-B 4932
71 4U55 48 M1, m1 60S ribosomal protein L11-B 4932
72 1K9M 6 F RIBOSOMAL PROTEIN L5 2238
73 1KD1 6 F RIBOSOMAL PROTEIN L5 2238
74 3I55 5 D 50S ribosomal protein L5P 2238
75 4U51 48 M1, m1 60S ribosomal protein L11-B 4932
76 1K8A 6 F RIBOSOMAL PROTEIN L5 2238
77 4U53 48 M1, m1 60S ribosomal protein L11-B 4932
78 1Q86 7 F 50S ribosomal protein L5P 2238
79 4U50 48 M1, m1 60S ribosomal protein L11-B 4932
80 1M1K 6 F RIBOSOMAL PROTEIN L5 2238
81 3G4S 5 D 50S ribosomal protein L5P 2238
82 1W2B 9 D 50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5 2238
83 4U56 48 M1, m1 60S ribosomal protein L11-B 4932
84 2QA4 6 D 50S ribosomal protein L5P 2238
85 1Q7Y 7 F 50S ribosomal protein L5P 2238
86 5FCJ 48 M1, m1 60S ribosomal protein L11-A 4932
87 4U4O 48 M1, m1 60S ribosomal protein L11-B 4932
88 4V8P 25 BD, CD, ED, GD 60S RIBOSOMAL PROTEIN L11 5911
89 5FCI 48 M1, m1 60S ribosomal protein L11-A 4932
90 5AFF 3 C RIBOSOMAL PROTEIN L11 209285
91 4V7R 42 BK, DK 60S ribosomal protein L11-A 4932
92 4V4P 7 AG 50S ribosomal protein L5 274
93 4V4R 31 BG 50S ribosomal protein L5 274
94 4V4S 31 BG 50S ribosomal protein L5 274
95 4V4T 30 BG 50S ribosomal protein L5 274
96 5IT7 13 JJ KLLA0F08261p 28985
97 5GAK 31 M 60S ribosomal protein L11-A 4932
98 5FL8 10 J 60S ribosomal protein L11-A 4932
99 5APN 13 J 60S ribosomal protein L11-A 4932
100 5APO 13 J 60S ribosomal protein L11-A 4932
101 3JBN 72 AG 60S ribosomal protein uL5 5833
102 3JBO 72 AG 60S ribosomal protein uL5 5833
103 3JBP 72 AG 60S ribosomal protein uL5 5833
104 3JAN 5 J Ribosomal protein uL5 SEE REMARK 999 9986
105 3JAJ 5 J Ribosomal protein uL5 SEE REMARK 999 9986
106 3JAG 10 J uL5 9986
107 3JAH 10 J uL5 9986
108 3JAI 10 J uL5 9986
109 4UG0 13 LJ 60S RIBOSOMAL PROTEIN L11 9606
110 5AJ0 12 AJ 60S ribosomal protein L11 9606
111 3J92 10 J uL5 9986
112 4D67 10 J 60S RIBOSOMAL PROTEIN L11 9986
113 4D5Y 10 J 60S RIBOSOMAL PROTEIN UL5 9986
114 4V3P 38 LE Ribosomal protein L11 4565
115 3J7O 13 J Ribosomal protein uL5 9823
116 3J7P 13 J Ribosomal protein uL5 9823
117 3J7Q 13 J Ribosomal protein uL5 9823
118 3J7R 13 J Ribosomal protein uL5 9823
119 4UJC 16 BJ 60S RIBOSOMAL PROTEIN L11 9986
120 4UJD 13 AJ 60S RIBOSOMAL PROTEIN L11 9986
121 3J79 7 G 60S ribosomal protein uL5 5833
122 3J77 11 61 60S ribosomal protein L11 4932
123 3J78 11 61 60S ribosomal protein L11 4932
124 3J6X 14 51 60S ribosomal protein L11 4932
125 3J6Y 14 51 60S ribosomal protein L11 4932
126 4UJE 47 CJ 60S RIBOSOMAL PROTEIN L11 9986
127 4V91 13 J UL5 RIBOSOMAL PROTEIN UL5 28985
128 4V7F 8 E 60S ribosomal protein L11 4932
129 4V7E 42 CJ 60S ribosomal protein L5 4565
130 4V8Y 44 BJ 60S RIBOSOMAL PROTEIN L11-A 4932
131 4V8Z 44 BJ 60S RIBOSOMAL PROTEIN L11-A 4932
132 4V4N 48 AE 50S ribosomal protein L5P SEE REMARK 999 2190
133 4V6W 79 CJ 60S ribosomal protein L11 7227
134 4V6X 79 CJ 60S ribosomal protein L11 9606
135 4V6U 40 BE 50S ribosomal protein L5P 2261
136 4V8T 10 J 60S RIBOSOMAL PROTEIN L11-B 4932
137 4ADX 14 D RPL5 145262
138 3J0Q 17 k Ribosomal protein L11 9986
139 4V6I 34 BE 60S ribosomal protein rpL11 (L5p) 4932
140 4V7H 34 BJ 60S ribosomal protein L11(B) 5541
141 4V5Z 56 Bd 60S Ribosomal protein L11 9612
142 2NOQ 8 H 60S ribosomal protein L11-B 4932
143 4V4B 29 BJ 60S ribosomal protein L11 4932
144 1ML5 31 g 50S RIBOSOMAL PROTEIN L5 562
145 4V42 31 BG 50S RIBOSOMAL PROTEIN L5 274