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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 271 Members. Sequence cutoff: 30% Cluster size: 124 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 6 D 50S ribosomal protein L5P 272569  
2 1VQO 7 D 50S ribosomal protein L5P 2238  
3 1VQ8 7 D 50S ribosomal protein L5P 2238  
4 1S72 6 D 50S ribosomal protein L5P 2238  
5 1JJ2 6 D RIBOSOMAL PROTEIN L5 2238  
6 1YHQ 6 D 50S ribosomal protein L5P 2238  
7 1VQP 7 D 50S ribosomal protein L5P 2238  
8 1VQM 7 D 50S ribosomal protein L5P 2238  
9 3CC2 4 D 50S ribosomal protein L5P 2238  
10 1VQL 7 D 50S ribosomal protein L5P 2238  
11 1VQK 7 D 50S ribosomal protein L5P 2238  
12 1VQN 8 D 50S ribosomal protein L5P 2238  
13 1YIJ 6 D 50S ribosomal protein L5P 2238  
14 1YI2 6 D 50S ribosomal protein L5P 2238  
15 1VQ9 7 D 50S ribosomal protein L5P 2238  
16 1VQ7 7 D 50S ribosomal protein L5P 2238  
17 3CCM 4 D 50S ribosomal protein L5P 272569  
18 1VQ5 7 D 50S ribosomal protein L5P 2238  
19 3CCJ 4 D 50S ribosomal protein L5P 272569  
20 3CC7 4 D 50S ribosomal protein L5P 2238  
21 1YIT 10 D 50S RIBOSOMAL PROTEIN L5P 2238  
22 3CCE 4 D 50S ribosomal protein L5P 272569  
23 3G6E 5 D 50S ribosomal protein L5P 2238  
24 3CPW 6 D 50S ribosomal protein L5P 2238  
25 3CCU 4 D 50S ribosomal protein L5P 272569  
26 1VQ6 8 D 50S ribosomal protein L5P 2238  
27 1M90 7 F RIBOSOMAL PROTEIN L5 2238  
28 3CCL 4 D 50S ribosomal protein L5P 272569  
29 1YJW 10 D 50S RIBOSOMAL PROTEIN L5P 2238  
30 1YJ9 6 D 50S ribosomal protein L5P 2238  
31 3CD6 4 D 50S ribosomal protein L5P 272569  
32 3CCV 4 D 50S ribosomal protein L5P 272569  
33 3CC4 4 D 50S ribosomal protein L5P 272569  
34 2OTL 6 D 50S ribosomal protein L5P 2238  
35 3G71 5 D 50S ribosomal protein L5P 2238  
36 1FFK 6 D RIBOSOMAL PROTEIN L5 2238  
37 1VQ4 7 D 50S ribosomal protein L5P 2238  
38 1YJN 6 D 50S ribosomal protein L5P 2238  
39 3CMA 4 D 50S ribosomal protein L5P 2238  
40 3CCS 4 D 50S ribosomal protein L5P 272569  
41 3CCQ 4 D 50S ribosomal protein L5P 272569  
42 3I56 4 D 50S ribosomal protein L5P 2238  
43 3CCR 4 D 50S ribosomal protein L5P 272569  
44 2OTJ 6 D 50S ribosomal protein L5P 2238  
45 4V88 48 BJ, DJ 60S ribosomal protein L11-A 559292  
46 1KQS 8 D RIBOSOMAL PROTEIN L5 2238  
47 3OW2 6 D 50S ribosomal protein L5P 2238  
48 4U4R 48 M1, m1 60S ribosomal protein L11-B 559292  
49 3CXC 7 D RIBOSOMAL PROTEIN L5 2238  
50 1QVG 7 D 50S ribosomal protein L5P 2238  
51 3CME 4 D 50S ribosomal protein L5P 2238  
52 2QEX 6 D 50S ribosomal protein L5P 2238  
53 4U3U 48 M1, m1 60S ribosomal protein L11-B 559292  
54 1KC8 6 F RIBOSOMAL PROTEIN L5 2238  
55 4U3M 48 M1, m1 60S ribosomal protein L11-B 559292  
56 1N8R 6 F 50S ribosomal protein L5P 2238  
57 4U3N 48 M1, m1 60S ribosomal protein L11-B 559292  
58 1Q81 7 F 50S ribosomal protein L5P 2238  
59 1Q82 7 F 50S ribosomal protein L5P 2238  
60 1QVF 7 D 50S ribosomal protein L5P 2238  
61 4U52 48 M1, m1 60S ribosomal protein L11-B 559292  
62 4U4Q 48 M1, m1 60S ribosomal protein L11-B 559292  
63 1NJI 6 F 50S ribosomal protein L5P 2238  
64 4U6F 48 M1, m1 60S ribosomal protein L11-B 559292  
65 4U4U 48 M1, m1 60S ribosomal protein L11-B 559292  
66 1K73 6 F RIBOSOMAL PROTEIN L5 2238  
67 4U4Z 48 M1, m1 60S ribosomal protein L11-B 559292  
68 4U4Y 48 M1, m1 60S ribosomal protein L11-B 559292  
69 4U4N 48 M1, m1 60S ribosomal protein L11-B 559292  
70 4U55 48 M1, m1 60S ribosomal protein L11-B 559292  
71 1K9M 6 F RIBOSOMAL PROTEIN L5 2238  
72 1KD1 6 F RIBOSOMAL PROTEIN L5 2238  
73 3I55 5 D 50S ribosomal protein L5P 2238  
74 4U51 48 M1, m1 60S ribosomal protein L11-B 559292  
75 1K8A 6 F RIBOSOMAL PROTEIN L5 2238  
76 4U53 48 M1, m1 60S ribosomal protein L11-B 559292  
77 1Q86 7 F 50S ribosomal protein L5P 2238  
78 4U50 48 M1, m1 60S ribosomal protein L11-B 559292  
79 1M1K 6 F RIBOSOMAL PROTEIN L5 2238  
80 3G4S 5 D 50S ribosomal protein L5P 2238  
81 1W2B 9 D 50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5 2238  
82 4U56 48 M1, m1 60S ribosomal protein L11-B 559292  
83 2QA4 6 D 50S ribosomal protein L5P 2238  
84 1Q7Y 7 F 50S ribosomal protein L5P 2238  
85 4U4O 48 M1, m1 60S ribosomal protein L11-B 559292  
86 4V8P 25 BD, CD, ED, GD 60S RIBOSOMAL PROTEIN L11 5911  
87 4V7R 42 BK, DK 60S ribosomal protein L11-A 4932  
88 4V4P 7 AG 50S ribosomal protein L5 300852  
89 4V4R 31 BG 50S ribosomal protein L5 274  
90 4V4S 31 BG 50S ribosomal protein L5 274  
91 4V4T 30 BG 50S ribosomal protein L5 274  
92 3J92 10 J uL5 9986  
93 4D67 10 J 60S RIBOSOMAL PROTEIN L11 9986  
94 4D5Y 10 J 60S RIBOSOMAL PROTEIN UL5 9986  
95 3J7O 13 J Ribosomal protein uL5 9823  
96 3J7P 13 J Ribosomal protein uL5 9823  
97 3J7Q 13 J Ribosomal protein uL5 9823  
98 3J7R 13 J Ribosomal protein uL5 9823  
99 4UJC 16 BJ 60S RIBOSOMAL PROTEIN L11 9986  
100 4UJD 13 AJ 60S RIBOSOMAL PROTEIN L11 9986  
101 3J79 7 G 60S ribosomal protein uL5 36329  
102 3J77 11 61 60S ribosomal protein L11 4932  
103 3J78 11 61 60S ribosomal protein L11 4932  
104 3J6X 14 51 60S ribosomal protein L11 580240  
105 3J6Y 14 51 60S ribosomal protein L11 580240  
106 4UJE 47 CJ 60S RIBOSOMAL PROTEIN L11 9986  
107 4V91 13 J UL5 RIBOSOMAL PROTEIN UL5 28985  
108 4V7F 8 E 60S ribosomal protein L11 4932  
109 4V7E 42 CJ 60S ribosomal protein L5 4565  
110 4V8Y 44 BJ 60S RIBOSOMAL PROTEIN L11-A 4932  
111 4V8Z 44 BJ 60S RIBOSOMAL PROTEIN L11-A 4932  
112 4V4N 48 AE 50S ribosomal protein L5P SEE REMARK 999 2190  
113 4V6W 79 CJ 60S ribosomal protein L11 7227  
114 4V6X 79 CJ 60S ribosomal protein L11 9606  
115 4V6U 40 BE 50S ribosomal protein L5P 186497  
116 4V8T 10 J 60S RIBOSOMAL PROTEIN L11-B 559292  
117 4ADX 14 D RPL5 187420  
118 3J0Q 17 k Ribosomal protein L11 9986  
119 4V6I 34 BE 60S ribosomal protein rpL11 (L5p) 4932  
120 4V5Z 56 Bd 60S Ribosomal protein L11 9615  
121 2NOQ 8 H 60S ribosomal protein L11-B 4932  
122 4V4B 29 BJ 60S ribosomal protein L11 4932  
123 1ML5 31 g 50S RIBOSOMAL PROTEIN L5 562  
124 4V42 31 BG 50S RIBOSOMAL PROTEIN L5 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 657
95% 36 68 471
90% 36 68 492
70% 36 68 532
50% 36 120 237
40% 36 120 264
30% 41 332 48
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48945
95% 1 1 34289
90% 1 1 32782
70% 36 68 525
50% 36 118 244
40% 36 118 271
30% 36 118 291
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 413
90% 36 74 437
70% 36 74 467
50% 36 74 515
40% 36 74 553
30% 40 324 52
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 411
90% 36 74 435
70% 36 74 465
50% 36 76 494
40% 36 76 531
30% 36 78 517
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 323
95% 36 68 473
90% 36 68 495
70% 36 68 535
50% 36 70 571
40% 36 70 602
30% 36 70 602
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1696
95% 36 68 469
90% 36 68 490
70% 36 68 530
50% 36 68 605
40% 36 70 599
30% 36 71 583
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 475
90% 36 68 497
70% 36 68 537
50% 36 70 574
40% 36 70 606
30% 36 71 585
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 335
95% 36 68 467
90% 36 68 488
70% 36 68 528
50% 36 68 602
40% 36 68 634
30% 36 121 279
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 416
90% 36 74 440
70% 36 74 470
50% 36 76 495
40% 36 78 511
30% 40 284 70
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 415
90% 36 74 439
70% 36 74 469
50% 36 127 220
40% 36 127 247
30% 36 127 261
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 312
95% 34 70 451
90% 34 70 472
70% 34 70 508
50% 34 70 575
40% 34 70 607
30% 34 70 604
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 417
90% 36 74 441
70% 36 74 471
50% 36 74 517
40% 36 74 556
30% 36 74 551
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 468
90% 36 68 489
70% 36 68 529
50% 36 68 603
40% 36 70 598
30% 36 71 582
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 477
90% 36 68 499
70% 36 68 539
50% 36 68 609
40% 36 68 639
30% 36 68 632
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51934
95% 3 5 11482
90% 3 5 11293
70% 3 5 10667
50% 3 5 9581
40% 3 5 8742
30% 3 5 7651
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57602
95% 1 1 40125
90% 1 1 38365
70% 3 21 2290
50% 7 30 1563
40% 7 76 414
30% 26 99 339
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 479
90% 36 68 501
70% 36 68 541
50% 36 69 592
40% 36 69 625
30% 36 69 621
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58888
95% 36 68 480
90% 36 68 502
70% 36 68 542
50% 36 120 238
40% 36 120 266
30% 36 120 285
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 476
90% 36 68 498
70% 36 68 538
50% 36 68 608
40% 36 68 638
30% 36 119 288
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 320
95% 36 68 466
90% 36 68 487
70% 36 68 527
50% 36 68 601
40% 36 119 269
30% 41 327 50
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1679
95% 36 68 463
90% 36 68 485
70% 36 68 524
50% 36 118 243
40% 36 120 263
30% 36 120 282
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43158
95% 36 74 406
90% 36 74 430
70% 36 74 461
50% 36 74 508
40% 36 124 253
30% 36 124 269
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7938
95% 36 74 409
90% 36 74 433
70% 36 74 464
50% 36 74 510
40% 36 76 529
30% 36 77 523
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 412
90% 36 74 436
70% 36 74 466
50% 36 74 513
40% 36 124 256
30% 36 124 271
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1707
95% 3 21 2238
90% 36 68 494
70% 36 68 534
50% 51 95 307
40% 58 105 292
30% 58 107 309
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50942
95% 1 1 35409
90% 1 7 8150
70% 3 27 1687
50% 36 74 514
40% 36 78 508
30% 36 78 518
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 414
90% 36 74 438
70% 36 74 468
50% 36 74 516
40% 37 77 521
30% 37 78 519
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.