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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 274 Members. Sequence cutoff: 30% Cluster size: 122 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 6 D 50S ribosomal protein L5P 272569  
2 1VQO 7 D 50S ribosomal protein L5P 2238  
3 1VQ8 7 D 50S ribosomal protein L5P 2238  
4 1S72 6 D 50S ribosomal protein L5P 2238  
5 1JJ2 6 D RIBOSOMAL PROTEIN L5 2238  
6 1YHQ 6 D 50S ribosomal protein L5P 2238  
7 1VQP 7 D 50S ribosomal protein L5P 2238  
8 1VQM 7 D 50S ribosomal protein L5P 2238  
9 3CC2 4 D 50S ribosomal protein L5P 2238  
10 1VQL 7 D 50S ribosomal protein L5P 2238  
11 1VQK 7 D 50S ribosomal protein L5P 2238  
12 1VQN 8 D 50S ribosomal protein L5P 2238  
13 1YIJ 6 D 50S ribosomal protein L5P 2238  
14 1YI2 6 D 50S ribosomal protein L5P 2238  
15 1VQ9 7 D 50S ribosomal protein L5P 2238  
16 1VQ7 7 D 50S ribosomal protein L5P 2238  
17 3CCM 4 D 50S ribosomal protein L5P 272569  
18 1VQ5 7 D 50S ribosomal protein L5P 2238  
19 3CCJ 4 D 50S ribosomal protein L5P 272569  
20 3CC7 4 D 50S ribosomal protein L5P 2238  
21 1YIT 10 D 50S RIBOSOMAL PROTEIN L5P 2238  
22 3CCE 4 D 50S ribosomal protein L5P 272569  
23 3G6E 5 D 50S ribosomal protein L5P 2238  
24 3CPW 6 D 50S ribosomal protein L5P 272569  
25 3CCU 4 D 50S ribosomal protein L5P 272569  
26 1VQ6 8 D 50S ribosomal protein L5P 2238  
27 1M90 7 F RIBOSOMAL PROTEIN L5 2238  
28 3CCL 4 D 50S ribosomal protein L5P 272569  
29 1YJW 10 D 50S RIBOSOMAL PROTEIN L5P 2238  
30 1YJ9 6 D 50S ribosomal protein L5P 2238  
31 3CD6 4 D 50S ribosomal protein L5P 272569  
32 3CCV 4 D 50S ribosomal protein L5P 272569  
33 3CC4 4 D 50S ribosomal protein L5P 272569  
34 2OTL 6 D 50S ribosomal protein L5P 2238  
35 3G71 5 D 50S ribosomal protein L5P 2238  
36 1FFK 6 D RIBOSOMAL PROTEIN L5 2238  
37 1VQ4 7 D 50S ribosomal protein L5P 2238  
38 1YJN 6 D 50S ribosomal protein L5P 2238  
39 3CMA 4 D 50S ribosomal protein L5P 2238  
40 3CCS 4 D 50S ribosomal protein L5P 272569  
41 3CCQ 4 D 50S ribosomal protein L5P 272569  
42 3I56 4 D 50S ribosomal protein L5P 2238  
43 3CCR 4 D 50S ribosomal protein L5P 272569  
44 2OTJ 6 D 50S ribosomal protein L5P 2238  
45 4V88 48 BJ, DJ 60S ribosomal protein L11-A 559292  
46 1KQS 8 D RIBOSOMAL PROTEIN L5 2238  
47 3OW2 6 D 50S ribosomal protein L5P 2238  
48 4U4R 48 M1, m1 60S ribosomal protein L11-B 559292  
49 3CXC 7 D RIBOSOMAL PROTEIN L5 2238  
50 1QVG 7 D 50S ribosomal protein L5P 2238  
51 3CME 4 D 50S ribosomal protein L5P 2238  
52 2QEX 6 D 50S ribosomal protein L5P 2238  
53 4U3U 48 M1, m1 60S ribosomal protein L11-B 559292  
54 1KC8 6 F RIBOSOMAL PROTEIN L5 2238  
55 4U3M 48 M1, m1 60S ribosomal protein L11-B 559292  
56 1N8R 6 F 50S ribosomal protein L5P 2238  
57 4U3N 48 M1, m1 60S ribosomal protein L11-B 559292  
58 1Q81 7 F 50S ribosomal protein L5P 2238  
59 1Q82 7 F 50S ribosomal protein L5P 2238  
60 1QVF 7 D 50S ribosomal protein L5P 2238  
61 4U52 48 M1, m1 60S ribosomal protein L11-B 559292  
62 4U4Q 48 M1, m1 60S ribosomal protein L11-B 559292  
63 1NJI 6 F 50S ribosomal protein L5P 2238  
64 4U6F 48 M1, m1 60S ribosomal protein L11-B 559292  
65 4U4U 48 M1, m1 60S ribosomal protein L11-B 559292  
66 1K73 6 F RIBOSOMAL PROTEIN L5 2238  
67 4U4Z 48 M1, m1 60S ribosomal protein L11-B 559292  
68 4U4Y 48 M1, m1 60S ribosomal protein L11-B 559292  
69 4U4N 48 M1, m1 60S ribosomal protein L11-B 559292  
70 4U55 48 M1, m1 60S ribosomal protein L11-B 559292  
71 1K9M 6 F RIBOSOMAL PROTEIN L5 2238  
72 1KD1 6 F RIBOSOMAL PROTEIN L5 2238  
73 3I55 5 D 50S ribosomal protein L5P 2238  
74 4U51 48 M1, m1 60S ribosomal protein L11-B 559292  
75 1K8A 6 F RIBOSOMAL PROTEIN L5 2238  
76 4U53 48 M1, m1 60S ribosomal protein L11-B 559292  
77 1Q86 7 F 50S ribosomal protein L5P 2238  
78 4U50 48 M1, m1 60S ribosomal protein L11-B 559292  
79 1M1K 6 F RIBOSOMAL PROTEIN L5 2238  
80 3G4S 5 D 50S ribosomal protein L5P 2238  
81 1W2B 9 D 50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5 2238  
82 4U56 48 M1, m1 60S ribosomal protein L11-B 559292  
83 2QA4 6 D 50S ribosomal protein L5P 2238  
84 1Q7Y 7 F 50S ribosomal protein L5P 2238  
85 4U4O 48 M1, m1 60S ribosomal protein L11-B 559292  
86 4V8P 25 BD, CD, ED, GD 60S RIBOSOMAL PROTEIN L11 5911  
87 4V7R 42 BK, DK 60S ribosomal protein L11-A 4932  
88 4V4P 7 AG 50S ribosomal protein L5 300852  
89 4V4R 31 BG 50S ribosomal protein L5 274  
90 4V4S 31 BG 50S ribosomal protein L5 274  
91 4V4T 30 BG 50S ribosomal protein L5 274  
92 3J92 10 J uL5 9986  
93 3J7O 13 J Ribosomal protein uL5 9823  
94 3J7P 13 J Ribosomal protein uL5 9823  
95 3J7Q 13 J Ribosomal protein uL5 9823  
96 3J7R 13 J Ribosomal protein uL5 9823  
97 4UJC 16 BJ 60S RIBOSOMAL PROTEIN L11 9986  
98 4UJD 13 AJ 60S RIBOSOMAL PROTEIN L11 9986  
99 3J79 7 G 60S ribosomal protein uL5 36329  
100 3J77 11 61 60S ribosomal protein L11 4932  
101 3J78 11 61 60S ribosomal protein L11 4932  
102 3J6X 14 51 60S ribosomal protein L11 580240  
103 3J6Y 14 51 60S ribosomal protein L11 580240  
104 4UJE 47 CJ 60S RIBOSOMAL PROTEIN L11 9986  
105 4V91 13 J UL5 RIBOSOMAL PROTEIN UL5 28985  
106 4V7F 8 E 60S ribosomal protein L11 4932  
107 4V7E 42 CJ 60S ribosomal protein L5 4565  
108 4V8Y 44 BJ 60S RIBOSOMAL PROTEIN L11-A 4932  
109 4V8Z 44 BJ 60S RIBOSOMAL PROTEIN L11-A 4932  
110 4V4N 48 AE 50S ribosomal protein L5P SEE REMARK 999 2190  
111 4V6W 79 CJ 60S ribosomal protein L11 7227  
112 4V6X 79 CJ 60S ribosomal protein L11 9606  
113 4V6U 40 BE 50S ribosomal protein L5P 186497  
114 4V8T 10 J 60S RIBOSOMAL PROTEIN L11-B 559292  
115 4ADX 14 D RPL5 187420  
116 3J0Q 17 k Ribosomal protein L11 9986  
117 4V6I 34 BE 60S ribosomal protein rpL11 (L5p) 4932  
118 4V5Z 56 Bd 60S Ribosomal protein L11 9615  
119 2NOQ 8 H 60S ribosomal protein L11-B 4932  
120 4V4B 29 BJ 60S ribosomal protein L11 4932  
121 1ML5 31 g 50S RIBOSOMAL PROTEIN L5 562  
122 4V42 31 BG 50S RIBOSOMAL PROTEIN L5 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 632
95% 36 68 463
90% 36 68 486
70% 36 68 522
50% 36 118 235
40% 36 118 264
30% 38 324 46
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48204
95% 1 1 33823
90% 1 1 32338
70% 36 68 515
50% 36 116 241
40% 36 116 272
30% 36 116 293
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 408
90% 36 74 432
70% 36 74 462
50% 36 74 507
40% 36 74 544
30% 37 316 51
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 285
95% 36 74 406
90% 36 74 430
70% 36 74 460
50% 36 76 486
40% 36 76 520
30% 36 78 511
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 465
90% 36 68 489
70% 36 68 525
50% 36 70 549
40% 36 70 583
30% 36 70 582
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1666
95% 36 68 461
90% 36 68 484
70% 36 68 520
50% 36 68 584
40% 36 70 582
30% 36 71 563
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 467
90% 36 68 491
70% 36 68 527
50% 36 70 552
40% 36 70 587
30% 36 71 565
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 333
95% 36 68 459
90% 36 68 482
70% 36 68 518
50% 36 68 581
40% 36 68 614
30% 36 119 280
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 411
90% 36 74 435
70% 36 74 466
50% 36 76 488
40% 36 78 503
30% 37 278 69
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 410
90% 36 74 434
70% 36 74 465
50% 36 125 220
40% 36 125 248
30% 36 125 264
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 309
95% 34 70 445
90% 34 70 465
70% 34 70 500
50% 34 70 553
40% 34 70 588
30% 34 70 584
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 412
90% 36 74 436
70% 36 74 467
50% 36 74 510
40% 36 74 546
30% 36 74 542
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 460
90% 36 68 483
70% 36 68 519
50% 36 68 582
40% 36 70 581
30% 36 71 562
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 469
90% 36 68 493
70% 36 68 529
50% 36 68 589
40% 36 68 621
30% 36 68 614
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51158
95% 3 5 11321
90% 3 5 11140
70% 3 5 10526
50% 3 5 9462
40% 3 5 8631
30% 3 5 7566
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56766
95% 1 1 39596
90% 1 1 37864
70% 3 21 2252
50% 7 30 1533
40% 7 74 413
30% 26 97 334
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 471
90% 36 68 495
70% 36 68 531
50% 36 69 568
40% 36 69 606
30% 36 69 601
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58037
95% 36 68 472
90% 36 68 496
70% 36 68 532
50% 36 118 236
40% 36 118 265
30% 36 118 285
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 468
90% 36 68 492
70% 36 68 528
50% 36 68 588
40% 36 68 620
30% 36 117 289
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 318
95% 36 68 458
90% 36 68 481
70% 36 68 517
50% 36 68 579
40% 36 117 269
30% 38 319 48
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1649
95% 35 67 475
90% 35 67 499
70% 35 67 537
50% 35 115 244
40% 35 117 267
30% 35 117 286
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42501
95% 36 74 400
90% 36 74 424
70% 36 74 455
50% 36 74 501
40% 36 122 253
30% 36 122 272
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7765
95% 36 74 404
90% 36 74 428
70% 36 74 459
50% 36 74 504
40% 36 76 519
30% 36 77 516
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 407
90% 36 74 431
70% 36 74 461
50% 36 74 505
40% 36 122 256
30% 36 122 274
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1677
95% 3 21 2199
90% 36 68 488
70% 36 68 524
50% 51 95 299
40% 58 105 287
30% 58 107 307
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50178
95% 1 1 34929
90% 1 7 8043
70% 3 27 1661
50% 36 74 506
40% 36 78 500
30% 36 78 512
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 409
90% 36 74 433
70% 36 74 463
50% 36 74 508
40% 37 77 511
30% 37 78 513
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.