Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 823
95 % 36 68 652
90 % 36 68 679
70 % 36 68 722
50 % 36 175 200
40 % 36 175 220
30 % 44 509 30
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58425
95 % 1 1 40724
90 % 1 1 38770
70 % 36 68 714
50 % 36 171 205
40 % 36 171 229
30 % 36 171 235
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 413
95 % 36 74 576
90 % 36 74 606
70 % 36 74 637
50 % 36 74 685
40 % 36 74 724
30 % 43 491 36
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 411
95 % 36 74 574
90 % 36 74 604
70 % 36 74 634
50 % 36 76 659
40 % 36 76 700
30 % 36 79 670
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 463
95 % 36 68 653
90 % 36 68 681
70 % 36 68 724
50 % 36 70 746
40 % 36 70 784
30 % 36 70 779
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2151
95 % 36 68 651
90 % 36 68 677
70 % 36 68 720
50 % 36 68 773
40 % 36 72 751
30 % 36 72 747
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 465
95 % 36 68 656
90 % 36 68 683
70 % 36 68 728
50 % 36 70 748
40 % 36 70 786
30 % 36 71 761
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 478
95 % 36 68 649
90 % 36 68 675
70 % 36 68 717
50 % 36 68 770
40 % 36 68 806
30 % 36 174 228
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 419
95 % 36 74 581
90 % 36 74 610
70 % 36 74 643
50 % 36 76 662
40 % 36 78 677
30 % 43 399 58
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 417
95 % 36 74 579
90 % 36 74 609
70 % 36 74 642
50 % 36 179 194
40 % 36 179 212
30 % 36 179 224
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 444
95 % 34 70 627
90 % 34 70 654
70 % 34 70 697
50 % 34 70 749
40 % 34 70 789
30 % 34 70 783
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 421
95 % 36 74 582
90 % 36 74 611
70 % 36 74 644
50 % 36 74 690
40 % 36 74 727
30 % 36 74 725
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 461
95 % 36 68 650
90 % 36 68 676
70 % 36 68 718
50 % 36 68 771
40 % 36 70 781
30 % 36 71 758
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 467
95 % 36 68 658
90 % 36 68 685
70 % 36 68 730
50 % 36 68 777
40 % 36 68 811
30 % 36 68 804
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61743
95 % 3 5 13809
90 % 3 5 13556
70 % 3 5 12721
50 % 3 5 11366
40 % 3 5 10309
30 % 3 5 8948
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68007
95 % 1 1 47126
90 % 1 1 44816
70 % 3 21 2821
50 % 7 30 1890
40 % 7 128 296
30 % 26 151 267
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 468
95 % 36 68 659
90 % 36 68 686
70 % 36 68 733
50 % 36 69 758
40 % 36 69 799
30 % 36 69 795
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69405
95 % 36 68 660
90 % 36 68 687
70 % 36 68 734
50 % 36 172 202
40 % 36 172 227
30 % 36 172 233
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 466
95 % 36 68 657
90 % 36 68 684
70 % 36 68 729
50 % 36 68 776
40 % 36 68 810
30 % 36 168 241
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 460
95 % 36 68 648
90 % 36 68 674
70 % 36 68 716
50 % 36 68 769
40 % 36 173 223
30 % 44 500 32
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2135
95 % 36 68 646
90 % 36 68 672
70 % 36 68 713
50 % 36 170 204
40 % 36 172 226
30 % 36 172 231
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51719
95 % 36 74 565
90 % 36 74 596
70 % 36 74 629
50 % 36 74 679
40 % 36 179 210
30 % 36 179 221
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9738
95 % 36 74 569
90 % 36 74 601
70 % 36 74 633
50 % 36 74 681
40 % 36 76 698
30 % 37 78 679
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 412
95 % 36 74 575
90 % 36 74 605
70 % 36 74 635
50 % 36 74 683
40 % 37 179 211
30 % 37 179 223
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2161
95 % 3 21 2792
90 % 36 68 680
70 % 36 68 723
50 % 51 105 316
40 % 58 120 286
30 % 58 122 283
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60656
95 % 1 1 41965
90 % 1 7 9829
70 % 3 27 2100
50 % 36 74 684
40 % 36 79 666
30 % 36 79 673
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 414
95 % 36 74 577
90 % 36 74 607
70 % 36 74 640
50 % 36 74 689
40 % 37 77 691
30 % 37 78 682

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 6 D 50S ribosomal protein L5P 2238
2 1VQO 7 D 50S ribosomal protein L5P 2238
3 1VQ8 7 D 50S ribosomal protein L5P 2238
4 1S72 6 D 50S ribosomal protein L5P 2238
5 1JJ2 6 D RIBOSOMAL PROTEIN L5 2238
6 1YHQ 6 D 50S ribosomal protein L5P 2238
7 1VQP 7 D 50S ribosomal protein L5P 2238
8 1VQM 7 D 50S ribosomal protein L5P 2238
9 3CC2 4 D 50S ribosomal protein L5P 2238
10 1VQL 7 D 50S ribosomal protein L5P 2238
11 1VQK 7 D 50S ribosomal protein L5P 2238
12 1VQN 8 D 50S ribosomal protein L5P 2238
13 1YIJ 6 D 50S ribosomal protein L5P 2238
14 1YI2 6 D 50S ribosomal protein L5P 2238
15 1VQ9 7 D 50S ribosomal protein L5P 2238
16 1VQ7 7 D 50S ribosomal protein L5P 2238
17 3CCM 4 D 50S ribosomal protein L5P 2238
18 1VQ5 7 D 50S ribosomal protein L5P 2238
19 3CCJ 4 D 50S ribosomal protein L5P 2238
20 3CC7 4 D 50S ribosomal protein L5P 2238
21 1YIT 10 D 50S RIBOSOMAL PROTEIN L5P 2238
22 3CCE 4 D 50S ribosomal protein L5P 2238
23 3G6E 5 D 50S ribosomal protein L5P 2238
24 3CPW 6 D 50S ribosomal protein L5P 2238
25 3CCU 4 D 50S ribosomal protein L5P 2238
26 1VQ6 8 D 50S ribosomal protein L5P 2238
27 1M90 7 F RIBOSOMAL PROTEIN L5 2238
28 3CCL 4 D 50S ribosomal protein L5P 2238
29 1YJW 10 D 50S RIBOSOMAL PROTEIN L5P 2238
30 1YJ9 6 D 50S ribosomal protein L5P 2238
31 3CD6 4 D 50S ribosomal protein L5P 2238
32 3CCV 4 D 50S ribosomal protein L5P 2238
33 3CC4 4 D 50S ribosomal protein L5P 2238
34 2OTL 6 D 50S ribosomal protein L5P 2238
35 3G71 5 D 50S ribosomal protein L5P 2238
36 1FFK 6 D RIBOSOMAL PROTEIN L5 2238
37 1VQ4 7 D 50S ribosomal protein L5P 2238
38 1YJN 6 D 50S ribosomal protein L5P 2238
39 3CMA 4 D 50S ribosomal protein L5P 2238
40 3CCS 4 D 50S ribosomal protein L5P 2238
41 3CCQ 4 D 50S ribosomal protein L5P 2238
42 3I56 4 D 50S ribosomal protein L5P 2238
43 3CCR 4 D 50S ribosomal protein L5P 2238
44 2OTJ 6 D 50S ribosomal protein L5P 2238
45 1KQS 8 D RIBOSOMAL PROTEIN L5 2238
46 3OW2 6 D 50S ribosomal protein L5P 2238
47 3CXC 7 D RIBOSOMAL PROTEIN L5 2238
48 1QVG 7 D 50S ribosomal protein L5P 2238
49 3CME 4 D 50S ribosomal protein L5P 2238
50 2QEX 6 D 50S ribosomal protein L5P 2238
51 1KC8 6 F RIBOSOMAL PROTEIN L5 2238
52 1N8R 6 F 50S ribosomal protein L5P 2238
53 1Q81 7 F 50S ribosomal protein L5P 2238
54 1Q82 7 F 50S ribosomal protein L5P 2238
55 1QVF 7 D 50S ribosomal protein L5P 2238
56 1NJI 6 F 50S ribosomal protein L5P 2238
57 1K73 6 F RIBOSOMAL PROTEIN L5 2238
58 1K9M 6 F RIBOSOMAL PROTEIN L5 2238
59 1KD1 6 F RIBOSOMAL PROTEIN L5 2238
60 3I55 5 D 50S ribosomal protein L5P 2238
61 1K8A 6 F RIBOSOMAL PROTEIN L5 2238
62 1Q86 7 F 50S ribosomal protein L5P 2238
63 1M1K 6 F RIBOSOMAL PROTEIN L5 2238
64 3G4S 5 D 50S ribosomal protein L5P 2238
65 1W2B 9 D 50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5 2238
66 2QA4 6 D 50S ribosomal protein L5P 2238
67 1Q7Y 7 F 50S ribosomal protein L5P 2238
68 4V4P 7 AG 50S ribosomal protein L5 274
69 4V4R 31 BG 50S ribosomal protein L5 274
70 4V4S 31 BG 50S ribosomal protein L5 274
71 4V4T 30 BG 50S ribosomal protein L5 274
72 4ADX 14 D RPL5 145262
73 1ML5 31 g 50S RIBOSOMAL PROTEIN L5 562
74 4V42 31 BG 50S RIBOSOMAL PROTEIN L5 274