Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 604
95 % 35 68 743 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 770
70 % 35 68 820
50 % 35 202 200
40 % 45 604 21
30 % 45 604 35
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48286
95 % 1 1 40056
90 % 1 1 38159
70 % 35 68 821
50 % 35 201 203
40 % 35 201 221
30 % 35 201 237
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 537
95 % 35 74 671 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 693
70 % 35 74 739
50 % 35 74 793
40 % 35 199 223
30 % 35 199 239
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 529
95 % 35 74 658 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 681
70 % 35 74 727
50 % 35 76 765
40 % 35 76 796
30 % 35 79 768
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 617
95 % 35 68 761 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 787
70 % 35 68 837
50 % 35 70 847
40 % 35 70 878
30 % 35 70 869
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2834
95 % 35 68 764 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 790
70 % 35 68 840
50 % 35 68 888
40 % 35 72 843
30 % 35 72 850
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 605
95 % 35 68 744 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 771
70 % 35 68 822
50 % 35 70 857
40 % 35 70 887
30 % 35 71 863
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 630
95 % 35 68 751 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 777
70 % 35 68 828
50 % 35 68 877
40 % 35 68 901
30 % 35 199 240
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 542
95 % 35 74 672 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 696
70 % 35 74 744
50 % 35 77 754
40 % 44 465 42
30 % 44 465 62
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 533
95 % 35 74 664 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 686
70 % 35 74 733
50 % 35 208 194
40 % 35 209 212
30 % 35 209 230
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 575
95 % 33 70 714 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 740
70 % 33 70 788
50 % 33 70 848
40 % 33 70 871
30 % 33 70 871
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 534
95 % 35 74 665 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 687
70 % 35 74 734
50 % 35 74 789
40 % 44 425 51
30 % 44 451 66
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 611
95 % 35 68 752 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 778
70 % 35 68 829
50 % 35 68 878
40 % 35 70 876
30 % 35 71 862
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 618
95 % 35 68 762 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 788
70 % 35 68 838
50 % 35 68 886
40 % 35 68 908
30 % 35 70 875
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58544
95 % 3 5 15132 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14820
70 % 3 5 13862
50 % 3 5 12266
40 % 3 5 10999
30 % 3 5 9352
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2737
95 % 3 21 3078
90 % 3 21 3131
70 % 3 21 3070
50 % 7 30 2095
40 % 7 151 280
30 % 9 155 284
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 619
95 % 35 68 745 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 772
70 % 35 68 823
50 % 35 69 859
40 % 35 69 889
30 % 35 69 880
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58543
95 % 35 68 755 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 781
70 % 35 68 832
50 % 35 194 207
40 % 35 194 228
30 % 35 194 244
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 603
95 % 35 68 742 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 769
70 % 35 68 819
50 % 35 68 871
40 % 35 189 233
30 % 35 189 250
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 616
95 % 35 68 760 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 785
70 % 35 68 816
50 % 35 68 883
40 % 35 199 224
30 % 45 593 39
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 21 2755
95 % 35 68 759 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 784
70 % 35 68 835
50 % 35 192 208
40 % 35 192 230
30 % 35 192 246
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60866
95 % 35 74 669 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 691
70 % 35 74 737
50 % 35 74 792
40 % 35 207 213
30 % 35 207 231
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 860
95 % 35 74 662 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 684
70 % 35 74 729
50 % 35 74 784
40 % 35 76 799
30 % 36 78 780
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 535
95 % 35 74 667 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 690
70 % 35 74 736
50 % 35 74 791
40 % 36 201 220
30 % 36 201 235
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2754
95 % 3 21 3093 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 767
70 % 35 68 817
50 % 51 107 396
40 % 58 128 313
30 % 72 274 154
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60863
95 % 1 1 49651
90 % 1 7 11229
70 % 3 27 2414
50 % 35 74 786
40 % 35 79 758
30 % 35 79 771
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 532
95 % 35 74 657 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 679
70 % 35 74 726
50 % 35 74 785
40 % 36 78 783
30 % 36 78 782

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 6 D 50S ribosomal protein L5P 2238
2 1VQO 7 D 50S ribosomal protein L5P 2238
3 1VQ8 7 D 50S ribosomal protein L5P 2238
4 1S72 6 D 50S ribosomal protein L5P 2238
5 1JJ2 6 D RIBOSOMAL PROTEIN L5 2238
6 1YHQ 6 D 50S ribosomal protein L5P 2238
7 1VQP 7 D 50S ribosomal protein L5P 2238
8 1VQM 7 D 50S ribosomal protein L5P 2238
9 3CC2 4 D 50S ribosomal protein L5P 2238
10 1VQL 7 D 50S ribosomal protein L5P 2238
11 1VQK 7 D 50S ribosomal protein L5P 2238
12 1VQN 8 D 50S ribosomal protein L5P 2238
13 1YIJ 6 D 50S ribosomal protein L5P 2238
14 1YI2 6 D 50S ribosomal protein L5P 2238
15 1VQ9 7 D 50S ribosomal protein L5P 2238
16 1VQ7 7 D 50S ribosomal protein L5P 2238
17 3CCM 4 D 50S ribosomal protein L5P 2238
18 1VQ5 7 D 50S ribosomal protein L5P 2238
19 3CC7 4 D 50S ribosomal protein L5P 2238
20 1YIT 10 D 50S RIBOSOMAL PROTEIN L5P 2238
21 3CCE 4 D 50S ribosomal protein L5P 2238
22 3G6E 5 D 50S ribosomal protein L5P 2238
23 3CPW 6 D 50S ribosomal protein L5P 2238
24 3CCU 4 D 50S ribosomal protein L5P 2238
25 1VQ6 8 D 50S ribosomal protein L5P 2238
26 1M90 7 F RIBOSOMAL PROTEIN L5 2238
27 3CCL 4 D 50S ribosomal protein L5P 2238
28 1YJW 10 D 50S RIBOSOMAL PROTEIN L5P 2238
29 1YJ9 6 D 50S ribosomal protein L5P 2238
30 3CD6 4 D 50S ribosomal protein L5P 2238
31 3CCV 4 D 50S ribosomal protein L5P 2238
32 3CC4 4 D 50S ribosomal protein L5P 2238
33 2OTL 6 D 50S ribosomal protein L5P 2238
34 3G71 5 D 50S ribosomal protein L5P 2238
35 1FFK 6 D RIBOSOMAL PROTEIN L5 2238
36 1VQ4 7 D 50S ribosomal protein L5P 2238
37 1YJN 6 D 50S ribosomal protein L5P 2238
38 3CMA 4 D 50S ribosomal protein L5P 2238
39 3CCS 4 D 50S ribosomal protein L5P 2238
40 3CCQ 4 D 50S ribosomal protein L5P 2238
41 3I56 4 D 50S ribosomal protein L5P 2238
42 3CCR 4 D 50S ribosomal protein L5P 2238
43 2OTJ 6 D 50S ribosomal protein L5P 2238
44 1KQS 8 D RIBOSOMAL PROTEIN L5 2238
45 3OW2 6 D 50S ribosomal protein L5P 2238
46 3CXC 7 D RIBOSOMAL PROTEIN L5 2238
47 1QVG 7 D 50S ribosomal protein L5P 2238
48 3CME 4 D 50S ribosomal protein L5P 2238
49 2QEX 6 D 50S ribosomal protein L5P 2238
50 1KC8 6 F RIBOSOMAL PROTEIN L5 2238
51 1N8R 6 F 50S ribosomal protein L5P 2238
52 1Q81 7 F 50S ribosomal protein L5P 2238
53 1Q82 7 F 50S ribosomal protein L5P 2238
54 1QVF 7 D 50S ribosomal protein L5P 2238
55 1NJI 6 F 50S ribosomal protein L5P 2238
56 1K73 6 F RIBOSOMAL PROTEIN L5 2238
57 1K9M 6 F RIBOSOMAL PROTEIN L5 2238
58 1KD1 6 F RIBOSOMAL PROTEIN L5 2238
59 3I55 5 D 50S ribosomal protein L5P 2238
60 1K8A 6 F RIBOSOMAL PROTEIN L5 2238
61 1Q86 7 F 50S ribosomal protein L5P 2238
62 1M1K 6 F RIBOSOMAL PROTEIN L5 2238
63 3G4S 5 D 50S ribosomal protein L5P 2238
64 3CCJ 4 D 50S ribosomal protein L5P 2238
65 1W2B 9 D 50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5 2238
66 2QA4 6 D 50S ribosomal protein L5P 2238
67 1Q7Y 7 F 50S ribosomal protein L5P 2238
68 4V4P 7 AG 50S ribosomal protein L5 274
69 4V4R 31 BG 50S ribosomal protein L5 274
70 4V4S 31 BG 50S ribosomal protein L5 274
71 4V4T 30 BG 50S ribosomal protein L5 274
72 4ADX 14 D RPL5 145262
73 1ML5 31 g 50S RIBOSOMAL PROTEIN L5 562
74 4V42 31 BG 50S RIBOSOMAL PROTEIN L5 274