Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 595
95 % 35 68 732 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 757
70 % 35 68 804
50 % 35 199 202
40 % 45 591 21
30 % 45 591 37
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47946
95 % 1 1 39797
90 % 1 1 37923
70 % 35 68 805
50 % 35 198 205
40 % 35 198 222
30 % 35 198 238
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 526
95 % 35 74 660 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 683
70 % 35 74 727
50 % 35 74 790
40 % 35 196 223
30 % 35 196 239
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 518
95 % 35 74 646 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 671
70 % 35 74 715
50 % 35 76 761
40 % 35 76 793
30 % 35 79 760
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 608
95 % 35 68 749 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 774
70 % 35 68 821
50 % 35 70 841
40 % 35 70 874
30 % 35 70 860
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2806
95 % 35 68 752 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 777
70 % 35 68 824
50 % 35 68 880
40 % 35 72 839
30 % 35 72 840
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 596
95 % 35 68 733 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 758
70 % 35 68 806
50 % 35 70 850
40 % 35 70 881
30 % 35 71 854
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 625
95 % 35 68 740 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 764
70 % 35 68 813
50 % 35 68 869
40 % 35 68 896
30 % 35 196 240
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 531
95 % 35 74 662 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 685
70 % 35 74 731
50 % 35 77 751
40 % 44 455 46
30 % 44 455 63
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 522
95 % 35 74 653 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 676
70 % 35 74 721
50 % 35 205 197
40 % 35 206 212
30 % 35 206 230
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 568
95 % 33 70 703 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 728
70 % 33 70 774
50 % 33 70 842
40 % 33 70 868
30 % 33 70 862
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 523
95 % 35 74 654 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 677
70 % 35 74 722
50 % 35 74 786
40 % 44 415 52
30 % 44 441 66
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 602
95 % 35 68 741 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 765
70 % 35 68 814
50 % 35 68 870
40 % 35 70 872
30 % 35 71 853
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 609
95 % 35 68 750 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 775
70 % 35 68 822
50 % 35 68 878
40 % 35 68 902
30 % 35 70 867
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58140
95 % 3 5 15018 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14710
70 % 3 5 13764
50 % 3 5 12179
40 % 3 5 10920
30 % 3 5 9293
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2708
95 % 3 21 3043
90 % 3 21 3091
70 % 3 21 3037
50 % 7 30 2112
40 % 7 148 286
30 % 9 152 291
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 611
95 % 35 68 734 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 759
70 % 35 68 807
50 % 35 69 852
40 % 35 69 883
30 % 35 69 870
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58139
95 % 35 68 739 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 763
70 % 35 68 812
50 % 35 191 207
40 % 35 191 228
30 % 35 191 245
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 594
95 % 35 68 731 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 756
70 % 35 68 803
50 % 35 68 864
40 % 35 186 235
30 % 35 186 250
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 607
95 % 35 68 748 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 772
70 % 35 68 801
50 % 35 68 875
40 % 35 196 224
30 % 45 581 40
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 21 2727
95 % 35 68 747 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 771
70 % 35 68 819
50 % 35 189 208
40 % 35 189 231
30 % 35 189 248
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60447
95 % 35 74 658 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 681
70 % 35 74 725
50 % 35 74 789
40 % 35 204 214
30 % 35 204 231
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 855
95 % 35 74 650 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 674
70 % 35 74 717
50 % 35 74 781
40 % 35 76 796
30 % 36 78 775
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 524
95 % 35 74 656 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 680
70 % 35 74 724
50 % 35 74 788
40 % 36 198 220
30 % 36 198 236
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2726
95 % 3 21 3060 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 755
70 % 35 68 802
50 % 51 107 392
40 % 58 128 309
30 % 72 271 153
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60444
95 % 1 1 49317
90 % 1 7 10986
70 % 3 27 2390
50 % 35 74 783
40 % 35 79 754
30 % 35 79 764
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 521
95 % 35 74 651 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 670
70 % 35 74 714
50 % 35 74 782
40 % 36 78 780
30 % 36 78 776

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 5 C 50S ribosomal protein L4P 2238
2 1VQO 6 C 50S ribosomal protein L4E 2238
3 1VQ8 6 C 50S ribosomal protein L4E 2238
4 1S72 5 C 50S ribosomal protein L4E 2238
5 1JJ2 5 C RIBOSOMAL PROTEIN L4 2238
6 1YHQ 5 C 50S ribosomal protein L4E 2238
7 1VQP 6 C 50S ribosomal protein L4E 2238
8 1VQM 6 C 50S ribosomal protein L4E 2238
9 3CC2 3 C 50S ribosomal protein L4P 2238
10 1VQL 6 C 50S ribosomal protein L4E 2238
11 1VQK 6 C 50S ribosomal protein L4E 2238
12 1VQN 7 C 50S ribosomal protein L4E 2238
13 1YIJ 5 C 50S ribosomal protein L4E 2238
14 1YI2 5 C 50S ribosomal protein L4E 2238
15 1VQ9 6 C 50S ribosomal protein L4E 2238
16 1VQ7 6 C 50S ribosomal protein L4E 2238
17 3CCM 3 C 50S ribosomal protein L4P 2238
18 1VQ5 6 C 50S ribosomal protein L4E 2238
19 3CC7 3 C 50S ribosomal protein L4P 2238
20 1YIT 9 C 50S RIBOSOMAL PROTEIN L4E 2238
21 3CCE 3 C 50S ribosomal protein L4P 2238
22 3G6E 4 C 50S ribosomal protein L4P 2238
23 3CPW 5 C 50S ribosomal protein L4P 2238
24 3CCU 3 C 50S ribosomal protein L4P 2238
25 1VQ6 7 C 50S ribosomal protein L4E 2238
26 1M90 6 E RIBOSOMAL PROTEIN L4 2238
27 3CCL 3 C 50S ribosomal protein L4P 2238
28 1YJW 9 C 50S RIBOSOMAL PROTEIN L4E 2238
29 1YJ9 5 C 50S ribosomal protein L4E 2238
30 3CD6 3 C 50S ribosomal protein L4P 2238
31 3CCV 3 C 50S ribosomal protein L4P 2238
32 3CC4 3 C 50S ribosomal protein L4P 2238
33 2OTL 5 C 50S ribosomal protein L4P 2238
34 3G71 4 C 50S ribosomal protein L4P 2238
35 1FFK 5 C RIBOSOMAL PROTEIN L4 2238
36 1VQ4 6 C 50S ribosomal protein L4E 2238
37 1YJN 5 C 50S ribosomal protein L4E 2238
38 3CMA 3 C 50S ribosomal protein L4P 2238
39 3CCS 3 C 50S ribosomal protein L4P 2238
40 3CCQ 3 C 50S ribosomal protein L4P 2238
41 3I56 3 C 50S ribosomal protein L4P 2238
42 3CCR 3 C 50S ribosomal protein L4P 2238
43 2OTJ 5 C 50S ribosomal protein L4P 2238
44 1KQS 7 C RIBOSOMAL PROTEIN L4 2238
45 3OW2 5 C 50S ribosomal protein L4P 2238
46 3CXC 6 C RIBOSOMAL PROTEIN L4 2238
47 1QVG 6 C 50S ribosomal protein L4E 2238
48 3CME 3 C 50S ribosomal protein L4P 2238
49 2QEX 5 C 50S ribosomal protein L4P 2238
50 1KC8 5 E RIBOSOMAL PROTEIN L4 2238
51 1N8R 5 E 50S ribosomal protein L4E 2238
52 1Q81 6 E 50S ribosomal protein L4E 2238
53 1Q82 6 E 50S ribosomal protein L4E 2238
54 1QVF 6 C 50S ribosomal protein L4E 2238
55 1NJI 5 E 50S ribosomal protein L4E 2238
56 1K73 5 E RIBOSOMAL PROTEIN L4 2238
57 1K9M 5 E RIBOSOMAL PROTEIN L4 2238
58 1KD1 5 E RIBOSOMAL PROTEIN L4 2238
59 3I55 4 C 50S ribosomal protein L4P 2238
60 1K8A 5 E RIBOSOMAL PROTEIN L4 2238
61 1Q86 6 E 50S ribosomal protein L4E 2238
62 1M1K 5 E RIBOSOMAL PROTEIN L4 2238
63 3G4S 4 C 50S ribosomal protein L4P 2238
64 3CCJ 3 C 50S ribosomal protein L4P 2238
65 1W2B 8 C 50S RIBOSOMAL PROTEIN L4P 2238
66 2QA4 5 C 50S ribosomal protein L4P 2238
67 1Q7Y 6 E 50S ribosomal protein L4E 2238
68 4V4P 6 AF 50S ribosomal protein L4 274
69 4V4R 30 BF 50S ribosomal protein L4 274
70 4V4S 30 BF 50S ribosomal protein L4 274
71 4V4T 29 BF 50S ribosomal protein L4 274
72 4ADX 13 C RPL4 145262
73 1ML5 30 f 50S RIBOSOMAL PROTEIN L4 562
74 4V42 30 BF 50S RIBOSOMAL PROTEIN L4 274